data_7L9Y
#
_model_server_result.job_id            ZkpsKgA6NXKwxfviz9_Raw 
_model_server_result.datetime_utc      '2025-01-10 12:21:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l9y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":1901}' 
#
_entry.id    7L9Y 
#
_exptl.entry_id    7L9Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              376.491 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-(cyclopentylamino)-5-fluoro-2-{[(piperidin-4-yl)sulfanyl]methyl}quinazolin-4(3H)-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7L9Y 
_cell.length_a            72.65 
_cell.length_b            92.23 
_cell.length_c            144.54 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L9Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,R 1 1 
B,I,J,K,L,S 2 1 
C,M,N,T 3 1 
D,O,P,Q,U 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 I N N 
? 2 M N N 
? 2 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 1618 1_555 D SG CYS 11 D CYS 1618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
disulf ? disulf2 B SG CYS 11 B CYS 1618 1_555 C SG CYS 11 C CYS 1618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
#
_chem_comp.formula           'C19 H25 F N4 O S' 
_chem_comp.formula_weight    376.491 
_chem_comp.id                XRM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-(cyclopentylamino)-5-fluoro-2-{[(piperidin-4-yl)sulfanyl]methyl}quinazolin-4(3H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 C16 XRM sing 385 n n 
C15 C14 XRM sing 386 n n 
C16 C12 XRM sing 387 n n 
C14 C13 XRM sing 388 n n 
C12 N11 XRM sing 389 n n 
C12 C13 XRM sing 390 n n 
N11 C1 XRM sing 391 n n 
C2 C1 XRM doub 392 n y 
C2 C3 XRM sing 393 n y 
C1 C6 XRM sing 394 n y 
F25 C3 XRM sing 395 n n 
C3 C4 XRM doub 396 n y 
C6 C5 XRM doub 397 n y 
C4 C5 XRM sing 398 n y 
C4 C7 XRM sing 399 n n 
C5 N10 XRM sing 400 n n 
O26 C7 XRM doub 401 n n 
C7 N8 XRM sing 402 n n 
N10 C9 XRM doub 403 n n 
N8 C9 XRM sing 404 n n 
C9 C17 XRM sing 405 n n 
C17 S18 XRM sing 406 n n 
S18 C19 XRM sing 407 n n 
C19 C20 XRM sing 408 n n 
C19 C24 XRM sing 409 n n 
C20 C21 XRM sing 410 n n 
C24 C23 XRM sing 411 n n 
C21 N22 XRM sing 412 n n 
C23 N22 XRM sing 413 n n 
C6 H1 XRM sing 414 n n 
C13 H2 XRM sing 415 n n 
C13 H3 XRM sing 416 n n 
C15 H4 XRM sing 417 n n 
C15 H5 XRM sing 418 n n 
C17 H6 XRM sing 419 n n 
C17 H7 XRM sing 420 n n 
C20 H8 XRM sing 421 n n 
C20 H9 XRM sing 422 n n 
C21 H10 XRM sing 423 n n 
C21 H11 XRM sing 424 n n 
C24 H12 XRM sing 425 n n 
C24 H13 XRM sing 426 n n 
C2 H14 XRM sing 427 n n 
N8 H15 XRM sing 428 n n 
N11 H16 XRM sing 429 n n 
C12 H17 XRM sing 430 n n 
C14 H18 XRM sing 431 n n 
C14 H19 XRM sing 432 n n 
C16 H20 XRM sing 433 n n 
C16 H21 XRM sing 434 n n 
C19 H22 XRM sing 435 n n 
N22 H23 XRM sing 436 n n 
C23 H25 XRM sing 437 n n 
C23 H26 XRM sing 438 n n 
#
_atom_sites.entry_id                     7L9Y 
_atom_sites.fract_transf_matrix[1][1]    0.013765 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010842 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 XRM A 1 1901 1 XRM LIG . 
F 3 CL A 1 1902 4 CL CL . 
G 3 CL A 1 1903 5 CL CL . 
H 4 EDO A 1 1904 2 EDO EDO . 
I 2 XRM B 1 1901 2 XRM LIG . 
J 3 CL B 1 1902 3 CL CL . 
K 4 EDO B 1 1903 1 EDO EDO . 
L 4 EDO B 1 1904 3 EDO EDO . 
M 2 XRM C 1 1901 3 XRM LIG . 
N 3 CL C 1 1902 1 CL CL . 
O 2 XRM D 1 1901 4 XRM LIG . 
P 3 CL D 1 1902 2 CL CL . 
Q 4 EDO D 1 1903 4 EDO EDO . 
R 5 HOH A 1 2001 45 HOH HOH . 
R 5 HOH A 2 2002 35 HOH HOH . 
R 5 HOH A 3 2003 38 HOH HOH . 
R 5 HOH A 4 2004 19 HOH HOH . 
R 5 HOH A 5 2005 70 HOH HOH . 
R 5 HOH A 6 2006 14 HOH HOH . 
R 5 HOH A 7 2007 7 HOH HOH . 
R 5 HOH A 8 2008 67 HOH HOH . 
R 5 HOH A 9 2009 29 HOH HOH . 
R 5 HOH A 10 2010 66 HOH HOH . 
R 5 HOH A 11 2011 4 HOH HOH . 
R 5 HOH A 12 2012 28 HOH HOH . 
R 5 HOH A 13 2013 11 HOH HOH . 
R 5 HOH A 14 2014 44 HOH HOH . 
R 5 HOH A 15 2015 64 HOH HOH . 
R 5 HOH A 16 2016 43 HOH HOH . 
R 5 HOH A 17 2017 33 HOH HOH . 
R 5 HOH A 18 2018 34 HOH HOH . 
R 5 HOH A 19 2019 40 HOH HOH . 
R 5 HOH A 20 2020 72 HOH HOH . 
R 5 HOH A 21 2021 77 HOH HOH . 
R 5 HOH A 22 2022 73 HOH HOH . 
R 5 HOH A 23 2023 65 HOH HOH . 
S 5 HOH B 1 2001 24 HOH HOH . 
S 5 HOH B 2 2002 68 HOH HOH . 
S 5 HOH B 3 2003 17 HOH HOH . 
S 5 HOH B 4 2004 32 HOH HOH . 
S 5 HOH B 5 2005 10 HOH HOH . 
S 5 HOH B 6 2006 13 HOH HOH . 
S 5 HOH B 7 2007 61 HOH HOH . 
S 5 HOH B 8 2008 3 HOH HOH . 
S 5 HOH B 9 2009 54 HOH HOH . 
S 5 HOH B 10 2010 22 HOH HOH . 
S 5 HOH B 11 2011 53 HOH HOH . 
S 5 HOH B 12 2012 5 HOH HOH . 
S 5 HOH B 13 2013 9 HOH HOH . 
S 5 HOH B 14 2014 25 HOH HOH . 
S 5 HOH B 15 2015 31 HOH HOH . 
S 5 HOH B 16 2016 26 HOH HOH . 
S 5 HOH B 17 2017 16 HOH HOH . 
S 5 HOH B 18 2018 58 HOH HOH . 
S 5 HOH B 19 2019 60 HOH HOH . 
S 5 HOH B 20 2020 59 HOH HOH . 
T 5 HOH C 1 2001 20 HOH HOH . 
T 5 HOH C 2 2002 76 HOH HOH . 
T 5 HOH C 3 2003 51 HOH HOH . 
T 5 HOH C 4 2004 8 HOH HOH . 
T 5 HOH C 5 2005 49 HOH HOH . 
T 5 HOH C 6 2006 52 HOH HOH . 
T 5 HOH C 7 2007 55 HOH HOH . 
T 5 HOH C 8 2008 37 HOH HOH . 
T 5 HOH C 9 2009 2 HOH HOH . 
T 5 HOH C 10 2010 48 HOH HOH . 
T 5 HOH C 11 2011 50 HOH HOH . 
T 5 HOH C 12 2012 63 HOH HOH . 
T 5 HOH C 13 2013 47 HOH HOH . 
T 5 HOH C 14 2014 15 HOH HOH . 
T 5 HOH C 15 2015 30 HOH HOH . 
T 5 HOH C 16 2016 69 HOH HOH . 
U 5 HOH D 1 2001 56 HOH HOH . 
U 5 HOH D 2 2002 12 HOH HOH . 
U 5 HOH D 3 2003 74 HOH HOH . 
U 5 HOH D 4 2004 75 HOH HOH . 
U 5 HOH D 5 2005 18 HOH HOH . 
U 5 HOH D 6 2006 23 HOH HOH . 
U 5 HOH D 7 2007 41 HOH HOH . 
U 5 HOH D 8 2008 1 HOH HOH . 
U 5 HOH D 9 2009 36 HOH HOH . 
U 5 HOH D 10 2010 6 HOH HOH . 
U 5 HOH D 11 2011 21 HOH HOH . 
U 5 HOH D 12 2012 71 HOH HOH . 
U 5 HOH D 13 2013 62 HOH HOH . 
U 5 HOH D 14 2014 42 HOH HOH . 
U 5 HOH D 15 2015 27 HOH HOH . 
U 5 HOH D 16 2016 46 HOH HOH . 
U 5 HOH D 17 2017 57 HOH HOH . 
U 5 HOH D 18 2018 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 XRM . . . O 2 -20.45 -14.299 44.07 1 51.82 ? C4 XRM 1901 D 1 
HETATM 2 C C5 XRM . . . O 2 -21.827 -14.634 43.973 1 55.32 ? C5 XRM 1901 D 1 
HETATM 3 C C6 XRM . . . O 2 -22.449 -15.371 44.996 1 53.02 ? C6 XRM 1901 D 1 
HETATM 4 C C7 XRM . . . O 2 -19.841 -13.549 42.956 1 47.63 ? C7 XRM 1901 D 1 
HETATM 5 C C13 XRM . . . O 2 -23.359 -18.535 46.386 1 56.56 ? C13 XRM 1901 D 1 
HETATM 6 C C15 XRM . . . O 2 -24.916 -18.843 48.259 1 56.35 ? C15 XRM 1901 D 1 
HETATM 7 C C17 XRM . . . O 2 -22.807 -13.267 40.658 1 66.32 ? C17 XRM 1901 D 1 
HETATM 8 C C20 XRM . . . O 2 -23.844 -13.238 37.582 1 80.06 ? C20 XRM 1901 D 1 
HETATM 9 C C21 XRM . . . O 2 -24.662 -13.146 36.293 1 81.09 ? C21 XRM 1901 D 1 
HETATM 10 C C24 XRM . . . O 2 -23.789 -15.727 37.263 1 81.49 ? C24 XRM 1901 D 1 
HETATM 11 C C1 XRM . . . O 2 -21.732 -15.756 46.118 1 51.59 ? C1 XRM 1901 D 1 
HETATM 12 C C2 XRM . . . O 2 -20.379 -15.413 46.211 1 52.21 ? C2 XRM 1901 D 1 
HETATM 13 C C3 XRM . . . O 2 -19.753 -14.7 45.209 1 52.15 ? C3 XRM 1901 D 1 
HETATM 14 N N8 XRM . . . O 2 -20.654 -13.227 41.927 1 50.3 ? N8 XRM 1901 D 1 
HETATM 15 C C9 XRM . . . O 2 -21.964 -13.591 41.887 1 56.69 ? C9 XRM 1901 D 1 
HETATM 16 N N10 XRM . . . O 2 -22.514 -14.264 42.853 1 55.79 ? N10 XRM 1901 D 1 
HETATM 17 N N11 XRM . . . O 2 -22.295 -16.462 47.181 1 51.43 ? N11 XRM 1901 D 1 
HETATM 18 C C12 XRM . . . O 2 -23.559 -17.195 47.106 1 54.2 ? C12 XRM 1901 D 1 
HETATM 19 C C14 XRM . . . O 2 -24.003 -19.628 47.274 1 57.86 ? C14 XRM 1901 D 1 
HETATM 20 C C16 XRM . . . O 2 -24.03 -17.603 48.517 1 56.05 ? C16 XRM 1901 D 1 
HETATM 21 S S18 XRM . . . O 2 -23.225 -14.848 39.807 1 94.3 ? S18 XRM 1901 D 1 
HETATM 22 C C19 XRM . . . O 2 -24.146 -14.593 38.241 1 83.54 ? C19 XRM 1901 D 1 
HETATM 23 N N22 XRM . . . O 2 -24.363 -14.284 35.4 1 84.22 ? N22 XRM 1901 D 1 
HETATM 24 C C23 XRM . . . O 2 -24.655 -15.587 36.013 1 82.7 ? C23 XRM 1901 D 1 
HETATM 25 F F25 XRM . . . O 2 -18.458 -14.393 45.327 1 54.13 ? F25 XRM 1901 D 1 
HETATM 26 O O26 XRM . . . O 2 -18.667 -13.224 42.919 1 41.99 ? O26 XRM 1901 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#