data_7L9Y
#
_model_server_result.job_id            O1gip2QMvSSL-uM602jitQ 
_model_server_result.datetime_utc      '2025-01-10 12:55:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l9y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1904}' 
#
_entry.id    7L9Y 
#
_exptl.entry_id    7L9Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7L9Y 
_cell.length_a            72.65 
_cell.length_b            92.23 
_cell.length_c            144.54 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L9Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,R 1 1 
B,I,J,K,L,S 2 1 
C,M,N,T 3 1 
D,O,P,Q,U 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 K N N 
? 4 L N N 
? 4 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 1618 1_555 D SG CYS 11 D CYS 1618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
disulf ? disulf2 B SG CYS 11 B CYS 1618 1_555 C SG CYS 11 C CYS 1618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7L9Y 
_atom_sites.fract_transf_matrix[1][1]    0.013765 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010842 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 XRM A 1 1901 1 XRM LIG . 
F 3 CL A 1 1902 4 CL CL . 
G 3 CL A 1 1903 5 CL CL . 
H 4 EDO A 1 1904 2 EDO EDO . 
I 2 XRM B 1 1901 2 XRM LIG . 
J 3 CL B 1 1902 3 CL CL . 
K 4 EDO B 1 1903 1 EDO EDO . 
L 4 EDO B 1 1904 3 EDO EDO . 
M 2 XRM C 1 1901 3 XRM LIG . 
N 3 CL C 1 1902 1 CL CL . 
O 2 XRM D 1 1901 4 XRM LIG . 
P 3 CL D 1 1902 2 CL CL . 
Q 4 EDO D 1 1903 4 EDO EDO . 
R 5 HOH A 1 2001 45 HOH HOH . 
R 5 HOH A 2 2002 35 HOH HOH . 
R 5 HOH A 3 2003 38 HOH HOH . 
R 5 HOH A 4 2004 19 HOH HOH . 
R 5 HOH A 5 2005 70 HOH HOH . 
R 5 HOH A 6 2006 14 HOH HOH . 
R 5 HOH A 7 2007 7 HOH HOH . 
R 5 HOH A 8 2008 67 HOH HOH . 
R 5 HOH A 9 2009 29 HOH HOH . 
R 5 HOH A 10 2010 66 HOH HOH . 
R 5 HOH A 11 2011 4 HOH HOH . 
R 5 HOH A 12 2012 28 HOH HOH . 
R 5 HOH A 13 2013 11 HOH HOH . 
R 5 HOH A 14 2014 44 HOH HOH . 
R 5 HOH A 15 2015 64 HOH HOH . 
R 5 HOH A 16 2016 43 HOH HOH . 
R 5 HOH A 17 2017 33 HOH HOH . 
R 5 HOH A 18 2018 34 HOH HOH . 
R 5 HOH A 19 2019 40 HOH HOH . 
R 5 HOH A 20 2020 72 HOH HOH . 
R 5 HOH A 21 2021 77 HOH HOH . 
R 5 HOH A 22 2022 73 HOH HOH . 
R 5 HOH A 23 2023 65 HOH HOH . 
S 5 HOH B 1 2001 24 HOH HOH . 
S 5 HOH B 2 2002 68 HOH HOH . 
S 5 HOH B 3 2003 17 HOH HOH . 
S 5 HOH B 4 2004 32 HOH HOH . 
S 5 HOH B 5 2005 10 HOH HOH . 
S 5 HOH B 6 2006 13 HOH HOH . 
S 5 HOH B 7 2007 61 HOH HOH . 
S 5 HOH B 8 2008 3 HOH HOH . 
S 5 HOH B 9 2009 54 HOH HOH . 
S 5 HOH B 10 2010 22 HOH HOH . 
S 5 HOH B 11 2011 53 HOH HOH . 
S 5 HOH B 12 2012 5 HOH HOH . 
S 5 HOH B 13 2013 9 HOH HOH . 
S 5 HOH B 14 2014 25 HOH HOH . 
S 5 HOH B 15 2015 31 HOH HOH . 
S 5 HOH B 16 2016 26 HOH HOH . 
S 5 HOH B 17 2017 16 HOH HOH . 
S 5 HOH B 18 2018 58 HOH HOH . 
S 5 HOH B 19 2019 60 HOH HOH . 
S 5 HOH B 20 2020 59 HOH HOH . 
T 5 HOH C 1 2001 20 HOH HOH . 
T 5 HOH C 2 2002 76 HOH HOH . 
T 5 HOH C 3 2003 51 HOH HOH . 
T 5 HOH C 4 2004 8 HOH HOH . 
T 5 HOH C 5 2005 49 HOH HOH . 
T 5 HOH C 6 2006 52 HOH HOH . 
T 5 HOH C 7 2007 55 HOH HOH . 
T 5 HOH C 8 2008 37 HOH HOH . 
T 5 HOH C 9 2009 2 HOH HOH . 
T 5 HOH C 10 2010 48 HOH HOH . 
T 5 HOH C 11 2011 50 HOH HOH . 
T 5 HOH C 12 2012 63 HOH HOH . 
T 5 HOH C 13 2013 47 HOH HOH . 
T 5 HOH C 14 2014 15 HOH HOH . 
T 5 HOH C 15 2015 30 HOH HOH . 
T 5 HOH C 16 2016 69 HOH HOH . 
U 5 HOH D 1 2001 56 HOH HOH . 
U 5 HOH D 2 2002 12 HOH HOH . 
U 5 HOH D 3 2003 74 HOH HOH . 
U 5 HOH D 4 2004 75 HOH HOH . 
U 5 HOH D 5 2005 18 HOH HOH . 
U 5 HOH D 6 2006 23 HOH HOH . 
U 5 HOH D 7 2007 41 HOH HOH . 
U 5 HOH D 8 2008 1 HOH HOH . 
U 5 HOH D 9 2009 36 HOH HOH . 
U 5 HOH D 10 2010 6 HOH HOH . 
U 5 HOH D 11 2011 21 HOH HOH . 
U 5 HOH D 12 2012 71 HOH HOH . 
U 5 HOH D 13 2013 62 HOH HOH . 
U 5 HOH D 14 2014 42 HOH HOH . 
U 5 HOH D 15 2015 27 HOH HOH . 
U 5 HOH D 16 2016 46 HOH HOH . 
U 5 HOH D 17 2017 57 HOH HOH . 
U 5 HOH D 18 2018 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 4 -16.344 8.317 17.708 1 52.54 ? C1 EDO 1904 A 1 
HETATM 2 O O1 EDO . . . H 4 -17.316 8.638 16.734 1 51.11 ? O1 EDO 1904 A 1 
HETATM 3 C C2 EDO . . . H 4 -15.788 9.509 18.403 1 54.71 ? C2 EDO 1904 A 1 
HETATM 4 O O2 EDO . . . H 4 -14.51 9.241 18.958 1 56.59 ? O2 EDO 1904 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#