data_7LA5
#
_model_server_result.job_id            kkHoQfEJQ9rq53wAUY_RvQ 
_model_server_result.datetime_utc      '2024-10-20 08:45:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7la5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    7LA5 
#
_exptl.entry_id    7LA5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LA5 
_cell.length_a            103.223 
_cell.length_b            118.855 
_cell.length_c            101.457 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LA5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 50 1_555 A SG CYS 47 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf2 A SG CYS 165 A CYS 192 1_555 A SG CYS 169 A CYS 196 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf3 A SG CYS 165 A CYS 192 1_555 A SG CYS 169 A CYS 196 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.055 ? 
covale ? covale1 A ND2 ASN 68 A ASN 95 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 A ND2 ASN 93 A ASN 120 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
covale ? covale3 A ND2 ASN 239 A ASN 266 1_555 F C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale4 A ND2 ASN 317 A ASN 344 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale5 B ND2 ASN 131 B ASN 511 1_555 I C1 NAG . B NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 270 n n 
C1 O1 NAG sing 271 n n 
C1 O5 NAG sing 272 n n 
C1 H1 NAG sing 273 n n 
C2 C3 NAG sing 274 n n 
C2 N2 NAG sing 275 n n 
C2 H2 NAG sing 276 n n 
C3 C4 NAG sing 277 n n 
C3 O3 NAG sing 278 n n 
C3 H3 NAG sing 279 n n 
C4 C5 NAG sing 280 n n 
C4 O4 NAG sing 281 n n 
C4 H4 NAG sing 282 n n 
C5 C6 NAG sing 283 n n 
C5 O5 NAG sing 284 n n 
C5 H5 NAG sing 285 n n 
C6 O6 NAG sing 286 n n 
C6 H61 NAG sing 287 n n 
C6 H62 NAG sing 288 n n 
C7 C8 NAG sing 289 n n 
C7 N2 NAG sing 290 n n 
C7 O7 NAG doub 291 n n 
C8 H81 NAG sing 292 n n 
C8 H82 NAG sing 293 n n 
C8 H83 NAG sing 294 n n 
N2 HN2 NAG sing 295 n n 
O1 HO1 NAG sing 296 n n 
O3 HO3 NAG sing 297 n n 
O4 HO4 NAG sing 298 n n 
O6 HO6 NAG sing 299 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7LA5 
_atom_sites.fract_transf_matrix[1][1]    0.009688 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008414 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009856 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 601 601 NAG NAG . 
D 3 NAG A 1 602 602 NAG NAG . 
E 3 NAG A 1 603 603 NAG NAG . 
F 3 NAG A 1 604 604 NAG NAG . 
G 4 EPE A 1 605 1 EPE HEP . 
H 5 CL A 1 606 1 CL CL . 
I 3 NAG B 1 1101 1101 NAG NAG . 
J 6 XSM B 1 1102 1 XSM LNT . 
K 7 HOH A 1 701 140 HOH HOH . 
K 7 HOH A 2 702 163 HOH HOH . 
K 7 HOH A 3 703 213 HOH HOH . 
K 7 HOH A 4 704 56 HOH HOH . 
K 7 HOH A 5 705 199 HOH HOH . 
K 7 HOH A 6 706 94 HOH HOH . 
K 7 HOH A 7 707 201 HOH HOH . 
K 7 HOH A 8 708 164 HOH HOH . 
K 7 HOH A 9 709 61 HOH HOH . 
K 7 HOH A 10 710 47 HOH HOH . 
K 7 HOH A 11 711 33 HOH HOH . 
K 7 HOH A 12 712 165 HOH HOH . 
K 7 HOH A 13 713 191 HOH HOH . 
K 7 HOH A 14 714 4 HOH HOH . 
K 7 HOH A 15 715 11 HOH HOH . 
K 7 HOH A 16 716 168 HOH HOH . 
K 7 HOH A 17 717 155 HOH HOH . 
K 7 HOH A 18 718 211 HOH HOH . 
K 7 HOH A 19 719 122 HOH HOH . 
K 7 HOH A 20 720 64 HOH HOH . 
K 7 HOH A 21 721 196 HOH HOH . 
K 7 HOH A 22 722 203 HOH HOH . 
K 7 HOH A 23 723 22 HOH HOH . 
K 7 HOH A 24 724 128 HOH HOH . 
K 7 HOH A 25 725 101 HOH HOH . 
K 7 HOH A 26 726 185 HOH HOH . 
K 7 HOH A 27 727 116 HOH HOH . 
K 7 HOH A 28 728 133 HOH HOH . 
K 7 HOH A 29 729 71 HOH HOH . 
K 7 HOH A 30 730 73 HOH HOH . 
K 7 HOH A 31 731 105 HOH HOH . 
K 7 HOH A 32 732 8 HOH HOH . 
K 7 HOH A 33 733 160 HOH HOH . 
K 7 HOH A 34 734 58 HOH HOH . 
K 7 HOH A 35 735 48 HOH HOH . 
K 7 HOH A 36 736 214 HOH HOH . 
K 7 HOH A 37 737 9 HOH HOH . 
K 7 HOH A 38 738 103 HOH HOH . 
K 7 HOH A 39 739 107 HOH HOH . 
K 7 HOH A 40 740 43 HOH HOH . 
K 7 HOH A 41 741 132 HOH HOH . 
K 7 HOH A 42 742 162 HOH HOH . 
K 7 HOH A 43 743 129 HOH HOH . 
K 7 HOH A 44 744 59 HOH HOH . 
K 7 HOH A 45 745 167 HOH HOH . 
K 7 HOH A 46 746 171 HOH HOH . 
K 7 HOH A 47 747 25 HOH HOH . 
K 7 HOH A 48 748 137 HOH HOH . 
K 7 HOH A 49 749 148 HOH HOH . 
K 7 HOH A 50 750 16 HOH HOH . 
K 7 HOH A 51 751 44 HOH HOH . 
K 7 HOH A 52 752 39 HOH HOH . 
K 7 HOH A 53 753 20 HOH HOH . 
K 7 HOH A 54 754 151 HOH HOH . 
K 7 HOH A 55 755 81 HOH HOH . 
K 7 HOH A 56 756 181 HOH HOH . 
K 7 HOH A 57 757 34 HOH HOH . 
K 7 HOH A 58 758 51 HOH HOH . 
K 7 HOH A 59 759 26 HOH HOH . 
K 7 HOH A 60 760 53 HOH HOH . 
K 7 HOH A 61 761 120 HOH HOH . 
K 7 HOH A 62 762 10 HOH HOH . 
K 7 HOH A 63 763 13 HOH HOH . 
K 7 HOH A 64 764 208 HOH HOH . 
K 7 HOH A 65 765 96 HOH HOH . 
K 7 HOH A 66 766 87 HOH HOH . 
K 7 HOH A 67 767 18 HOH HOH . 
K 7 HOH A 68 768 45 HOH HOH . 
K 7 HOH A 69 769 27 HOH HOH . 
K 7 HOH A 70 770 215 HOH HOH . 
K 7 HOH A 71 771 126 HOH HOH . 
K 7 HOH A 72 772 152 HOH HOH . 
K 7 HOH A 73 773 28 HOH HOH . 
K 7 HOH A 74 774 192 HOH HOH . 
K 7 HOH A 75 775 54 HOH HOH . 
K 7 HOH A 76 776 100 HOH HOH . 
K 7 HOH A 77 777 117 HOH HOH . 
K 7 HOH A 78 778 194 HOH HOH . 
K 7 HOH A 79 779 36 HOH HOH . 
K 7 HOH A 80 780 57 HOH HOH . 
K 7 HOH A 81 781 145 HOH HOH . 
K 7 HOH A 82 782 157 HOH HOH . 
K 7 HOH A 83 783 178 HOH HOH . 
K 7 HOH A 84 784 161 HOH HOH . 
K 7 HOH A 85 785 212 HOH HOH . 
K 7 HOH A 86 786 88 HOH HOH . 
K 7 HOH A 87 787 186 HOH HOH . 
K 7 HOH A 88 788 149 HOH HOH . 
K 7 HOH A 89 789 209 HOH HOH . 
K 7 HOH A 90 790 89 HOH HOH . 
K 7 HOH A 91 791 109 HOH HOH . 
K 7 HOH A 92 792 156 HOH HOH . 
K 7 HOH A 93 793 108 HOH HOH . 
K 7 HOH A 94 794 206 HOH HOH . 
K 7 HOH A 95 795 32 HOH HOH . 
K 7 HOH A 96 796 67 HOH HOH . 
L 7 HOH B 1 1201 166 HOH HOH . 
L 7 HOH B 2 1202 55 HOH HOH . 
L 7 HOH B 3 1203 112 HOH HOH . 
L 7 HOH B 4 1204 170 HOH HOH . 
L 7 HOH B 5 1205 202 HOH HOH . 
L 7 HOH B 6 1206 95 HOH HOH . 
L 7 HOH B 7 1207 139 HOH HOH . 
L 7 HOH B 8 1208 85 HOH HOH . 
L 7 HOH B 9 1209 141 HOH HOH . 
L 7 HOH B 10 1210 3 HOH HOH . 
L 7 HOH B 11 1211 24 HOH HOH . 
L 7 HOH B 12 1212 1 HOH HOH . 
L 7 HOH B 13 1213 131 HOH HOH . 
L 7 HOH B 14 1214 99 HOH HOH . 
L 7 HOH B 15 1215 62 HOH HOH . 
L 7 HOH B 16 1216 12 HOH HOH . 
L 7 HOH B 17 1217 40 HOH HOH . 
L 7 HOH B 18 1218 66 HOH HOH . 
L 7 HOH B 19 1219 153 HOH HOH . 
L 7 HOH B 20 1220 68 HOH HOH . 
L 7 HOH B 21 1221 46 HOH HOH . 
L 7 HOH B 22 1222 169 HOH HOH . 
L 7 HOH B 23 1223 207 HOH HOH . 
L 7 HOH B 24 1224 78 HOH HOH . 
L 7 HOH B 25 1225 158 HOH HOH . 
L 7 HOH B 26 1226 31 HOH HOH . 
L 7 HOH B 27 1227 6 HOH HOH . 
L 7 HOH B 28 1228 5 HOH HOH . 
L 7 HOH B 29 1229 114 HOH HOH . 
L 7 HOH B 30 1230 118 HOH HOH . 
L 7 HOH B 31 1231 7 HOH HOH . 
L 7 HOH B 32 1232 147 HOH HOH . 
L 7 HOH B 33 1233 93 HOH HOH . 
L 7 HOH B 34 1234 115 HOH HOH . 
L 7 HOH B 35 1235 30 HOH HOH . 
L 7 HOH B 36 1236 138 HOH HOH . 
L 7 HOH B 37 1237 187 HOH HOH . 
L 7 HOH B 38 1238 15 HOH HOH . 
L 7 HOH B 39 1239 104 HOH HOH . 
L 7 HOH B 40 1240 65 HOH HOH . 
L 7 HOH B 41 1241 14 HOH HOH . 
L 7 HOH B 42 1242 121 HOH HOH . 
L 7 HOH B 43 1243 17 HOH HOH . 
L 7 HOH B 44 1244 205 HOH HOH . 
L 7 HOH B 45 1245 90 HOH HOH . 
L 7 HOH B 46 1246 23 HOH HOH . 
L 7 HOH B 47 1247 210 HOH HOH . 
L 7 HOH B 48 1248 41 HOH HOH . 
L 7 HOH B 49 1249 79 HOH HOH . 
L 7 HOH B 50 1250 80 HOH HOH . 
L 7 HOH B 51 1251 84 HOH HOH . 
L 7 HOH B 52 1252 130 HOH HOH . 
L 7 HOH B 53 1253 72 HOH HOH . 
L 7 HOH B 54 1254 37 HOH HOH . 
L 7 HOH B 55 1255 135 HOH HOH . 
L 7 HOH B 56 1256 102 HOH HOH . 
L 7 HOH B 57 1257 60 HOH HOH . 
L 7 HOH B 58 1258 110 HOH HOH . 
L 7 HOH B 59 1259 113 HOH HOH . 
L 7 HOH B 60 1260 86 HOH HOH . 
L 7 HOH B 61 1261 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 -26.216 -1.78 -25.825 1 59.75 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . C 3 -26.294 -3.117 -26.566 1 65.39 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . C 3 -27.513 -3.327 -27.489 1 66.81 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . C 3 -28.592 -2.237 -27.475 1 64.76 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . C 3 -28.008 -0.907 -27.021 1 61.7 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . C 3 -29.043 0.189 -26.877 1 62.71 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . C 3 -24.443 -4.355 -27.523 1 66.33 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . C 3 -23.176 -4.28 -28.319 1 64.8 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . C 3 -25.057 -3.206 -27.321 1 63.6 ? N2 NAG 601 A 1 
HETATM 10 O O3 NAG . . . C 3 -28.117 -4.548 -27.14 1 70.97 ? O3 NAG 601 A 1 
HETATM 11 O O4 NAG . . . C 3 -29.167 -2.114 -28.759 1 68.6 ? O4 NAG 601 A 1 
HETATM 12 O O5 NAG . . . C 3 -27.451 -1.11 -25.746 1 61.18 ? O5 NAG 601 A 1 
HETATM 13 O O6 NAG . . . C 3 -28.313 1.335 -26.52 1 59.92 ? O6 NAG 601 A 1 
HETATM 14 O O7 NAG . . . C 3 -24.879 -5.425 -27.1 1 68.6 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#