data_7LAE # _model_server_result.job_id O0Jm3OJrj3iGGAqRCW2HMA _model_server_result.datetime_utc '2024-12-03 04:21:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lae # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":608}' # _entry.id 7LAE # _exptl.entry_id 7LAE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.156 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-L-fucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LAE _cell.length_a 106.917 _cell.length_b 106.917 _cell.length_c 238.964 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LAE _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M,N,O,P,Q,R,CA 1 1 C,D,E,S,T,U,V,W,X,Y,Z,AA,BA,DA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 L N N ? 7 Z N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 C 1 NAG B 640 NAG 3 n E NAG 2 C 2 NAG B 641 NAG 3 n F NAG 1 F 1 NAG E 640 NAG 3 n F NAG 2 F 2 NAG E 641 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 3 B CYS 115 1_555 B SG CYS 13 B CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? disulf ? disulf2 B SG CYS 7 B CYS 119 1_555 B SG CYS 31 B CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? disulf ? disulf3 B SG CYS 41 B CYS 153 1_555 D SG CYS 41 E CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? disulf ? disulf4 B SG CYS 109 B CYS 221 1_555 B SG CYS 120 B CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? disulf ? disulf5 B SG CYS 328 B CYS 440 1_555 B SG CYS 385 B CYS 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? disulf ? disulf6 D SG CYS 3 E CYS 115 1_555 D SG CYS 13 E CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? disulf ? disulf7 D SG CYS 7 E CYS 119 1_555 D SG CYS 31 E CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? disulf ? disulf8 D SG CYS 109 E CYS 221 1_555 D SG CYS 120 E CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? disulf ? disulf9 D SG CYS 328 E CYS 440 1_555 D SG CYS 385 E CYS 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? disulf ? disulf10 D SG CYS 426 E CYS 538 1_555 D SG CYS 452 E CYS 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? covale ? covale1 B ND2 ASN 77 B ASN 189 1_555 I C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 D ND2 ASN 77 E ASN 189 1_555 W C1 NAG . E NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.566 ? covale ? covale3 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale4 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? metalc ? metalc1 A O ASP 96 A ASP 96 1_555 P CA CA . B CA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc2 A OD1 ASP 96 A ASP 96 1_555 P CA CA . B CA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc3 B O THR 56 B THR 168 1_555 P CA CA . B CA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc4 B OG1 THR 56 B THR 168 1_555 P CA CA . B CA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc5 B O PHE 58 B PHE 170 1_555 P CA CA . B CA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc6 B OD1 ASP 60 B ASP 172 1_555 P CA CA . B CA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc7 B OG SER 62 B SER 174 1_555 P CA CA . B CA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc8 B NE2 HIS 224 B HIS 336 1_555 H FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc9 C O ASP 96 D ASP 96 1_555 AA CA CA . E CA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc10 C OD1 ASP 96 D ASP 96 1_555 AA CA CA . E CA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc11 D O THR 56 E THR 168 1_555 AA CA CA . E CA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc12 D OG1 THR 56 E THR 168 1_555 AA CA CA . E CA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc13 D O PHE 58 E PHE 170 1_555 AA CA CA . E CA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc14 D OD1 ASP 60 E ASP 172 1_555 AA CA CA . E CA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc15 D OG SER 62 E SER 174 1_555 AA CA CA . E CA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc16 D NE2 HIS 224 E HIS 336 1_555 V FE HEM . E HEM 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? # _chem_comp.formula 'C6 H12 O5' _chem_comp.formula_weight 164.156 _chem_comp.id FUC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-L-fucopyranose _chem_comp.type 'l-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-L-fucose;6-deoxy-alpha-L-galactopyranose;L-fucose;fucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FUC sing 107 n n C1 O1 FUC sing 108 n n C1 O5 FUC sing 109 n n C1 H1 FUC sing 110 n n C2 C3 FUC sing 111 n n C2 O2 FUC sing 112 n n C2 H2 FUC sing 113 n n C3 C4 FUC sing 114 n n C3 O3 FUC sing 115 n n C3 H3 FUC sing 116 n n C4 C5 FUC sing 117 n n C4 O4 FUC sing 118 n n C4 H4 FUC sing 119 n n C5 C6 FUC sing 120 n n C5 O5 FUC sing 121 n n C5 H5 FUC sing 122 n n C6 H61 FUC sing 123 n n C6 H62 FUC sing 124 n n C6 H63 FUC sing 125 n n O1 HO1 FUC sing 126 n n O2 HO2 FUC sing 127 n n O3 HO3 FUC sing 128 n n O4 HO4 FUC sing 129 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version FUC LFucpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 FUC a-L-fucopyranose 'COMMON NAME' GMML 1 FUC a-L-Fucp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 FUC Fuc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7LAE _atom_sites.fract_transf_matrix[1][1] 0.009353 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009353 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CL A 1 201 1 CL CL . H 5 HEM B 1 601 605 HEM HEM . I 6 NAG B 1 602 620 NAG NAG . J 6 NAG B 1 603 630 NAG NAG . K 6 NAG B 1 604 631 NAG NAG . L 7 FUC B 1 605 645 FUC FUC . M 8 BMA B 1 606 642 BMA BMA . N 9 MAN B 1 607 643 MAN MAN . O 9 MAN B 1 608 644 MAN MAN . P 10 CA B 1 609 1 CA CA . Q 4 CL B 1 610 2 CL CL . R 11 XRV B 1 611 1 XRV LG1 . S 8 BMA E 1 601 642 BMA BMA . T 9 MAN E 1 602 643 MAN MAN . U 9 MAN E 1 603 644 MAN MAN . V 5 HEM E 1 604 605 HEM HEM . W 6 NAG E 1 605 620 NAG NAG . X 6 NAG E 1 606 630 NAG NAG . Y 6 NAG E 1 607 631 NAG NAG . Z 7 FUC E 1 608 645 FUC FUC . AA 10 CA E 1 609 2 CA CA . BA 11 XRV E 1 610 2 XRV LG1 . CA 12 HOH B 1 701 4 HOH HOH . DA 12 HOH D 1 201 2 HOH HOH . EA 12 HOH E 1 701 1 HOH HOH . EA 12 HOH E 2 702 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FUC . . . Z 7 -33.637 -3.079 -25.065 1 68.95 ? C1 FUC 608 E 1 HETATM 2 C C2 FUC . . . Z 7 -33.32 -4.582 -25.118 1 67.3 ? C2 FUC 608 E 1 HETATM 3 C C3 FUC . . . Z 7 -34.405 -5.455 -24.478 1 69.21 ? C3 FUC 608 E 1 HETATM 4 C C4 FUC . . . Z 7 -35.809 -5.057 -24.919 1 65.64 ? C4 FUC 608 E 1 HETATM 5 C C5 FUC . . . Z 7 -36.017 -3.582 -24.585 1 64.28 ? C5 FUC 608 E 1 HETATM 6 C C6 FUC . . . Z 7 -37.377 -3.052 -24.982 1 56.28 ? C6 FUC 608 E 1 HETATM 7 O O2 FUC . . . Z 7 -32.077 -4.787 -24.456 1 65.31 ? O2 FUC 608 E 1 HETATM 8 O O3 FUC . . . Z 7 -34.183 -6.817 -24.83 1 73.48 ? O3 FUC 608 E 1 HETATM 9 O O4 FUC . . . Z 7 -35.946 -5.292 -26.317 1 65 ? O4 FUC 608 E 1 HETATM 10 O O5 FUC . . . Z 7 -35.029 -2.801 -25.287 1 69.74 ? O5 FUC 608 E 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #