data_7LAJ # _model_server_result.job_id MGEA69irgWRULi5faD-OMw _model_server_result.datetime_utc '2024-11-05 06:57:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7laj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7LAJ # _exptl.entry_id 7LAJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 543.609 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 134.33 _cell.angle_gamma 90 _cell.entry_id 7LAJ _cell.length_a 53.92 _cell.length_b 82.67 _cell.length_c 45.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LAJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H35 F2 N7 O3' _chem_comp.formula_weight 543.609 _chem_comp.id 79C _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F19 C18 79C sing 1 n n C18 F20 79C sing 2 n n C18 C21 79C sing 3 n n C18 C16 79C sing 4 n n O17 C16 79C doub 5 n n C21 N22 79C sing 6 n n C26 C25 79C sing 7 n n C26 C27 79C sing 8 n n C25 C24 79C sing 9 n n C16 N14 79C sing 10 n n C24 C23 79C sing 11 n n C27 C23 79C sing 12 n n N22 C23 79C sing 13 n n N22 C28 79C sing 14 n n N14 C15 79C sing 15 n n N14 C13 79C sing 16 n n C28 C13 79C doub 17 n y C28 N29 79C sing 18 n y C13 C12 79C sing 19 n y C37 N36 79C sing 20 n n N36 C35 79C sing 21 n n N36 C38 79C sing 22 n n N29 C10 79C doub 23 n y C35 C34 79C sing 24 n n C12 N11 79C doub 25 n y C34 C33 79C sing 26 n n C38 C39 79C sing 27 n n C39 C33 79C sing 28 n n C10 N11 79C sing 29 n y C10 N9 79C sing 30 n n C7 C6 79C doub 31 n y C7 C8 79C sing 32 n y N32 C33 79C sing 33 n n N32 C30 79C sing 34 n n C6 C5 79C sing 35 n y N9 C8 79C sing 36 n n C8 C3 79C doub 37 n y C5 C30 79C sing 38 n n C5 C4 79C doub 39 n y C30 O31 79C doub 40 n n C3 C4 79C sing 41 n y C3 O2 79C sing 42 n n O2 C1 79C sing 43 n n C4 H1 79C sing 44 n n C6 H2 79C sing 45 n n C7 H3 79C sing 46 n n C15 H4 79C sing 47 n n C15 H5 79C sing 48 n n C15 H6 79C sing 49 n n C21 H7 79C sing 50 n n C21 H8 79C sing 51 n n C24 H9 79C sing 52 n n C24 H10 79C sing 53 n n C26 H11 79C sing 54 n n C26 H12 79C sing 55 n n C1 H13 79C sing 56 n n C1 H14 79C sing 57 n n C1 H15 79C sing 58 n n N9 H16 79C sing 59 n n C12 H17 79C sing 60 n n C23 H18 79C sing 61 n n C25 H19 79C sing 62 n n C25 H20 79C sing 63 n n C27 H21 79C sing 64 n n C27 H22 79C sing 65 n n N32 H23 79C sing 66 n n C33 H24 79C sing 67 n n C34 H25 79C sing 68 n n C34 H26 79C sing 69 n n C35 H27 79C sing 70 n n C35 H28 79C sing 71 n n C37 H30 79C sing 72 n n C37 H31 79C sing 73 n n C37 H32 79C sing 74 n n C38 H33 79C sing 75 n n C38 H34 79C sing 76 n n C39 H35 79C sing 77 n n C39 H36 79C sing 78 n n # _atom_sites.entry_id 7LAJ _atom_sites.fract_transf_matrix[1][1] 0.018546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.018117 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 79C A 1 201 1 79C 79C . C 3 HOH A 1 301 95 HOH HOH . C 3 HOH A 2 302 26 HOH HOH . C 3 HOH A 3 303 69 HOH HOH . C 3 HOH A 4 304 77 HOH HOH . C 3 HOH A 5 305 84 HOH HOH . C 3 HOH A 6 306 25 HOH HOH . C 3 HOH A 7 307 12 HOH HOH . C 3 HOH A 8 308 5 HOH HOH . C 3 HOH A 9 309 48 HOH HOH . C 3 HOH A 10 310 7 HOH HOH . C 3 HOH A 11 311 67 HOH HOH . C 3 HOH A 12 312 54 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 4 HOH HOH . C 3 HOH A 15 315 40 HOH HOH . C 3 HOH A 16 316 32 HOH HOH . C 3 HOH A 17 317 93 HOH HOH . C 3 HOH A 18 318 17 HOH HOH . C 3 HOH A 19 319 49 HOH HOH . C 3 HOH A 20 320 72 HOH HOH . C 3 HOH A 21 321 46 HOH HOH . C 3 HOH A 22 322 35 HOH HOH . C 3 HOH A 23 323 83 HOH HOH . C 3 HOH A 24 324 9 HOH HOH . C 3 HOH A 25 325 98 HOH HOH . C 3 HOH A 26 326 38 HOH HOH . C 3 HOH A 27 327 41 HOH HOH . C 3 HOH A 28 328 99 HOH HOH . C 3 HOH A 29 329 20 HOH HOH . C 3 HOH A 30 330 1 HOH HOH . C 3 HOH A 31 331 71 HOH HOH . C 3 HOH A 32 332 42 HOH HOH . C 3 HOH A 33 333 10 HOH HOH . C 3 HOH A 34 334 18 HOH HOH . C 3 HOH A 35 335 59 HOH HOH . C 3 HOH A 36 336 29 HOH HOH . C 3 HOH A 37 337 15 HOH HOH . C 3 HOH A 38 338 55 HOH HOH . C 3 HOH A 39 339 14 HOH HOH . C 3 HOH A 40 340 3 HOH HOH . C 3 HOH A 41 341 81 HOH HOH . C 3 HOH A 42 342 100 HOH HOH . C 3 HOH A 43 343 91 HOH HOH . C 3 HOH A 44 344 47 HOH HOH . C 3 HOH A 45 345 36 HOH HOH . C 3 HOH A 46 346 85 HOH HOH . C 3 HOH A 47 347 51 HOH HOH . C 3 HOH A 48 348 28 HOH HOH . C 3 HOH A 49 349 19 HOH HOH . C 3 HOH A 50 350 75 HOH HOH . C 3 HOH A 51 351 45 HOH HOH . C 3 HOH A 52 352 86 HOH HOH . C 3 HOH A 53 353 37 HOH HOH . C 3 HOH A 54 354 11 HOH HOH . C 3 HOH A 55 355 70 HOH HOH . C 3 HOH A 56 356 24 HOH HOH . C 3 HOH A 57 357 21 HOH HOH . C 3 HOH A 58 358 105 HOH HOH . C 3 HOH A 59 359 22 HOH HOH . C 3 HOH A 60 360 60 HOH HOH . C 3 HOH A 61 361 68 HOH HOH . C 3 HOH A 62 362 8 HOH HOH . C 3 HOH A 63 363 79 HOH HOH . C 3 HOH A 64 364 53 HOH HOH . C 3 HOH A 65 365 6 HOH HOH . C 3 HOH A 66 366 39 HOH HOH . C 3 HOH A 67 367 16 HOH HOH . C 3 HOH A 68 368 65 HOH HOH . C 3 HOH A 69 369 88 HOH HOH . C 3 HOH A 70 370 31 HOH HOH . C 3 HOH A 71 371 63 HOH HOH . C 3 HOH A 72 372 27 HOH HOH . C 3 HOH A 73 373 101 HOH HOH . C 3 HOH A 74 374 82 HOH HOH . C 3 HOH A 75 375 56 HOH HOH . C 3 HOH A 76 376 104 HOH HOH . C 3 HOH A 77 377 62 HOH HOH . C 3 HOH A 78 378 73 HOH HOH . C 3 HOH A 79 379 2 HOH HOH . C 3 HOH A 80 380 96 HOH HOH . C 3 HOH A 81 381 61 HOH HOH . C 3 HOH A 82 382 50 HOH HOH . C 3 HOH A 83 383 30 HOH HOH . C 3 HOH A 84 384 89 HOH HOH . C 3 HOH A 85 385 78 HOH HOH . C 3 HOH A 86 386 74 HOH HOH . C 3 HOH A 87 387 80 HOH HOH . C 3 HOH A 88 388 64 HOH HOH . C 3 HOH A 89 389 33 HOH HOH . C 3 HOH A 90 390 92 HOH HOH . C 3 HOH A 91 391 58 HOH HOH . C 3 HOH A 92 392 94 HOH HOH . C 3 HOH A 93 393 57 HOH HOH . C 3 HOH A 94 394 102 HOH HOH . C 3 HOH A 95 395 43 HOH HOH . C 3 HOH A 96 396 66 HOH HOH . C 3 HOH A 97 397 34 HOH HOH . C 3 HOH A 98 398 52 HOH HOH . C 3 HOH A 99 399 44 HOH HOH . C 3 HOH A 100 400 97 HOH HOH . C 3 HOH A 101 401 23 HOH HOH . C 3 HOH A 102 402 87 HOH HOH . C 3 HOH A 103 403 76 HOH HOH . C 3 HOH A 104 404 90 HOH HOH . C 3 HOH A 105 405 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 79C . . . B 2 -7.99 -1.773 -7.602 1 36.75 ? C4 79C 201 A 1 HETATM 2 C C5 79C . . . B 2 -8.834 -1.028 -8.412 1 33.97 ? C5 79C 201 A 1 HETATM 3 C C6 79C . . . B 2 -10.206 -1.153 -8.306 1 30.5 ? C6 79C 201 A 1 HETATM 4 C C7 79C . . . B 2 -10.748 -2.045 -7.397 1 29.95 ? C7 79C 201 A 1 HETATM 5 C C8 79C . . . B 2 -9.904 -2.788 -6.593 1 33.42 ? C8 79C 201 A 1 HETATM 6 C C10 79C . . . B 2 -11.433 -3.933 -4.938 1 27.76 ? C10 79C 201 A 1 HETATM 7 C C13 79C . . . B 2 -13.822 -4.329 -3.746 1 22.11 ? C13 79C 201 A 1 HETATM 8 C C15 79C . . . B 2 -15.628 -6.018 -3.156 1 31.17 ? C15 79C 201 A 1 HETATM 9 C C21 79C . . . B 2 -15.374 -1.566 -3.735 1 29.76 ? C21 79C 201 A 1 HETATM 10 C C24 79C . . . B 2 -13.608 -0.231 -5.607 1 31.42 ? C24 79C 201 A 1 HETATM 11 C C26 79C . . . B 2 -15.177 0.483 -7.273 1 30.37 ? C26 79C 201 A 1 HETATM 12 C C28 79C . . . B 2 -13.667 -3.25 -4.603 1 22.4 ? C28 79C 201 A 1 HETATM 13 C C1 79C . . . B 2 -6.831 -2.704 -5.07 1 68.13 ? C1 79C 201 A 1 HETATM 14 O O2 79C . . . B 2 -7.721 -3.449 -5.854 1 59.7 ? O2 79C 201 A 1 HETATM 15 C C3 79C . . . B 2 -8.534 -2.666 -6.691 1 43.8 ? C3 79C 201 A 1 HETATM 16 N N9 79C . . . B 2 -10.122 -3.781 -5.551 1 28.27 ? N9 79C 201 A 1 HETATM 17 N N11 79C . . . B 2 -11.603 -4.994 -4.114 1 28.75 ? N11 79C 201 A 1 HETATM 18 C C12 79C . . . B 2 -12.774 -5.182 -3.539 1 29.15 ? C12 79C 201 A 1 HETATM 19 N N14 79C . . . B 2 -15.119 -4.658 -3.111 1 26.07 ? N14 79C 201 A 1 HETATM 20 C C16 79C . . . B 2 -15.868 -3.649 -2.459 1 25.12 ? C16 79C 201 A 1 HETATM 21 O O17 79C . . . B 2 -16.911 -3.969 -1.988 1 22.88 ? O17 79C 201 A 1 HETATM 22 C C18 79C . . . B 2 -15.39 -2.24 -2.386 1 23.69 ? C18 79C 201 A 1 HETATM 23 F F19 79C . . . B 2 -16.244 -1.598 -1.538 1 26.04 ? F19 79C 201 A 1 HETATM 24 F F20 79C . . . B 2 -14.133 -2.176 -1.862 1 28.23 ? F20 79C 201 A 1 HETATM 25 N N22 79C . . . B 2 -14.841 -2.367 -4.844 1 24.33 ? N22 79C 201 A 1 HETATM 26 C C23 79C . . . B 2 -14.565 -1.465 -5.994 1 27.99 ? C23 79C 201 A 1 HETATM 27 C C25 79C . . . B 2 -14.077 0.947 -6.585 1 33.69 ? C25 79C 201 A 1 HETATM 28 C C27 79C . . . B 2 -15.722 -0.838 -6.417 1 24.84 ? C27 79C 201 A 1 HETATM 29 N N29 79C . . . B 2 -12.461 -3.07 -5.191 1 25.19 ? N29 79C 201 A 1 HETATM 30 C C30 79C . . . B 2 -8.278 -0.015 -9.434 1 37.91 ? C30 79C 201 A 1 HETATM 31 O O31 79C . . . B 2 -7.295 0.605 -9.207 1 37.49 ? O31 79C 201 A 1 HETATM 32 N N32 79C . . . B 2 -9.021 0.203 -10.673 1 40.35 ? N32 79C 201 A 1 HETATM 33 C C33 79C . . . B 2 -8.531 1.193 -11.686 1 40.23 ? C33 79C 201 A 1 HETATM 34 C C34 79C . . . B 2 -7.529 0.526 -12.565 1 38.05 ? C34 79C 201 A 1 HETATM 35 C C35 79C . . . B 2 -7.15 1.416 -13.75 1 42.9 ? C35 79C 201 A 1 HETATM 36 N N36 79C . . . B 2 -8.337 1.986 -14.476 1 42.94 ? N36 79C 201 A 1 HETATM 37 C C37 79C . . . B 2 -7.886 3.022 -15.384 1 43 ? C37 79C 201 A 1 HETATM 38 C C38 79C . . . B 2 -9.378 2.577 -13.586 1 41.96 ? C38 79C 201 A 1 HETATM 39 C C39 79C . . . B 2 -9.744 1.647 -12.439 1 40.59 ? C39 79C 201 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 103 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #