data_7LAK # _model_server_result.job_id 8hoQRGPh8H_TZ0BFKswPUA _model_server_result.datetime_utc '2024-11-22 00:34:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7LAK # _exptl.entry_id 7LAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.813 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{trans-4-[4-(cyclopropylmethyl)piperazin-1-yl]cyclohexyl}-4-{[(7R)-7-ethyl-5-methyl-8-(1-methylethyl)-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxybenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 138.74 _cell.angle_gamma 90 _cell.entry_id 7LAK _cell.length_a 55.89 _cell.length_b 81.5 _cell.length_c 48.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H50 N8 O3' _chem_comp.formula_weight 618.813 _chem_comp.id IBI _chem_comp.mon_nstd_flag . _chem_comp.name N-{trans-4-[4-(cyclopropylmethyl)piperazin-1-yl]cyclohexyl}-4-{[(7R)-7-ethyl-5-methyl-8-(1-methylethyl)-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxybenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Volasertib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IBI sing 152 n n C1 N3 IBI sing 153 n n C2 N4 IBI sing 154 n n C5 C6 IBI sing 155 n n C5 N3 IBI sing 156 n n C6 N4 IBI sing 157 n n C7 C8 IBI sing 158 n n C7 C9 IBI sing 159 n n C8 C10 IBI sing 160 n n C11 C12 IBI sing 161 n n C11 C9 IBI sing 162 n n C12 C10 IBI sing 163 n n C15 C17 IBI doub 164 n y C15 C13 IBI sing 165 n y C16 C18 IBI doub 166 n y C16 O37 IBI sing 167 n n C16 C14 IBI sing 168 n y C17 C18 IBI sing 169 n y C17 C39 IBI sing 170 n n C21 C31 IBI sing 171 n n C21 N23 IBI sing 172 n n C21 C20 IBI sing 173 n n N22 C24 IBI sing 174 n n N22 C36 IBI sing 175 n n N22 C20 IBI sing 176 n n C24 C25 IBI doub 177 n y C24 C29 IBI sing 178 n y C31 C32 IBI sing 179 n n C33 C34 IBI sing 180 n n C33 C35 IBI sing 181 n n C33 N23 IBI sing 182 n n C38 O37 IBI sing 183 n n C39 O40 IBI doub 184 n n C39 N41 IBI sing 185 n n C14 N19 IBI sing 186 n n C14 C13 IBI doub 187 n y N19 C26 IBI sing 188 n n C26 N27 IBI doub 189 n y C26 N28 IBI sing 190 n y N27 C25 IBI sing 191 n y C25 N23 IBI sing 192 n n N28 C29 IBI doub 193 n y C20 O30 IBI doub 194 n n N41 C9 IBI sing 195 n n C10 N3 IBI sing 196 n n N4 C42 IBI sing 197 n n C42 C43 IBI sing 198 n n C43 C45 IBI sing 199 n n C43 C44 IBI sing 200 n n C45 C44 IBI sing 201 n n C1 H1 IBI sing 202 n n C1 H1A IBI sing 203 n n C2 H2 IBI sing 204 n n C2 H2A IBI sing 205 n n C5 H5 IBI sing 206 n n C5 H5A IBI sing 207 n n C6 H6 IBI sing 208 n n C6 H6A IBI sing 209 n n C7 H7 IBI sing 210 n n C7 H7A IBI sing 211 n n C8 H8 IBI sing 212 n n C8 H8A IBI sing 213 n n C11 H11 IBI sing 214 n n C11 H11A IBI sing 215 n n C12 H12 IBI sing 216 n n C12 H12A IBI sing 217 n n C15 H15 IBI sing 218 n n C18 H18 IBI sing 219 n n C21 H21 IBI sing 220 n n C31 H31 IBI sing 221 n n C31 H31A IBI sing 222 n n C32 H32 IBI sing 223 n n C32 H32A IBI sing 224 n n C32 H32B IBI sing 225 n n C33 H33 IBI sing 226 n n C34 H34 IBI sing 227 n n C34 H34A IBI sing 228 n n C34 H34B IBI sing 229 n n C35 H35 IBI sing 230 n n C35 H35A IBI sing 231 n n C35 H35B IBI sing 232 n n C36 H36 IBI sing 233 n n C36 H36A IBI sing 234 n n C36 H36B IBI sing 235 n n C38 H38 IBI sing 236 n n C38 H38A IBI sing 237 n n C38 H38B IBI sing 238 n n N19 HN19 IBI sing 239 n n C29 H29 IBI sing 240 n n C13 H13 IBI sing 241 n n N41 HN41 IBI sing 242 n n C9 H9 IBI sing 243 n n C10 H10 IBI sing 244 n n C42 H42 IBI sing 245 n n C42 H42A IBI sing 246 n n C43 H43 IBI sing 247 n n C45 H45 IBI sing 248 n n C45 H45A IBI sing 249 n n C44 H44 IBI sing 250 n n C44 H44A IBI sing 251 n n # _atom_sites.entry_id 7LAK _atom_sites.fract_transf_matrix[1][1] 0.017892 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.020392 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.03147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IBI A 1 201 1 IBI IBI . C 3 HOH A 1 301 58 HOH HOH . C 3 HOH A 2 302 45 HOH HOH . C 3 HOH A 3 303 6 HOH HOH . C 3 HOH A 4 304 37 HOH HOH . C 3 HOH A 5 305 52 HOH HOH . C 3 HOH A 6 306 79 HOH HOH . C 3 HOH A 7 307 27 HOH HOH . C 3 HOH A 8 308 84 HOH HOH . C 3 HOH A 9 309 53 HOH HOH . C 3 HOH A 10 310 39 HOH HOH . C 3 HOH A 11 311 46 HOH HOH . C 3 HOH A 12 312 73 HOH HOH . C 3 HOH A 13 313 5 HOH HOH . C 3 HOH A 14 314 22 HOH HOH . C 3 HOH A 15 315 81 HOH HOH . C 3 HOH A 16 316 48 HOH HOH . C 3 HOH A 17 317 61 HOH HOH . C 3 HOH A 18 318 78 HOH HOH . C 3 HOH A 19 319 7 HOH HOH . C 3 HOH A 20 320 10 HOH HOH . C 3 HOH A 21 321 4 HOH HOH . C 3 HOH A 22 322 80 HOH HOH . C 3 HOH A 23 323 17 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 19 HOH HOH . C 3 HOH A 26 326 1 HOH HOH . C 3 HOH A 27 327 34 HOH HOH . C 3 HOH A 28 328 35 HOH HOH . C 3 HOH A 29 329 16 HOH HOH . C 3 HOH A 30 330 56 HOH HOH . C 3 HOH A 31 331 8 HOH HOH . C 3 HOH A 32 332 21 HOH HOH . C 3 HOH A 33 333 14 HOH HOH . C 3 HOH A 34 334 32 HOH HOH . C 3 HOH A 35 335 76 HOH HOH . C 3 HOH A 36 336 42 HOH HOH . C 3 HOH A 37 337 3 HOH HOH . C 3 HOH A 38 338 63 HOH HOH . C 3 HOH A 39 339 60 HOH HOH . C 3 HOH A 40 340 85 HOH HOH . C 3 HOH A 41 341 25 HOH HOH . C 3 HOH A 42 342 69 HOH HOH . C 3 HOH A 43 343 15 HOH HOH . C 3 HOH A 44 344 29 HOH HOH . C 3 HOH A 45 345 43 HOH HOH . C 3 HOH A 46 346 13 HOH HOH . C 3 HOH A 47 347 33 HOH HOH . C 3 HOH A 48 348 26 HOH HOH . C 3 HOH A 49 349 23 HOH HOH . C 3 HOH A 50 350 64 HOH HOH . C 3 HOH A 51 351 82 HOH HOH . C 3 HOH A 52 352 40 HOH HOH . C 3 HOH A 53 353 68 HOH HOH . C 3 HOH A 54 354 77 HOH HOH . C 3 HOH A 55 355 2 HOH HOH . C 3 HOH A 56 356 44 HOH HOH . C 3 HOH A 57 357 50 HOH HOH . C 3 HOH A 58 358 62 HOH HOH . C 3 HOH A 59 359 9 HOH HOH . C 3 HOH A 60 360 57 HOH HOH . C 3 HOH A 61 361 54 HOH HOH . C 3 HOH A 62 362 59 HOH HOH . C 3 HOH A 63 363 11 HOH HOH . C 3 HOH A 64 364 47 HOH HOH . C 3 HOH A 65 365 31 HOH HOH . C 3 HOH A 66 366 49 HOH HOH . C 3 HOH A 67 367 36 HOH HOH . C 3 HOH A 68 368 18 HOH HOH . C 3 HOH A 69 369 12 HOH HOH . C 3 HOH A 70 370 66 HOH HOH . C 3 HOH A 71 371 30 HOH HOH . C 3 HOH A 72 372 72 HOH HOH . C 3 HOH A 73 373 38 HOH HOH . C 3 HOH A 74 374 70 HOH HOH . C 3 HOH A 75 375 74 HOH HOH . C 3 HOH A 76 376 75 HOH HOH . C 3 HOH A 77 377 67 HOH HOH . C 3 HOH A 78 378 55 HOH HOH . C 3 HOH A 79 379 83 HOH HOH . C 3 HOH A 80 380 65 HOH HOH . C 3 HOH A 81 381 51 HOH HOH . C 3 HOH A 82 382 28 HOH HOH . C 3 HOH A 83 383 41 HOH HOH . C 3 HOH A 84 384 71 HOH HOH . C 3 HOH A 85 385 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IBI . . . B 2 -28.997 -45.132 3.453 1 96.51 ? C1 IBI 201 A 1 HETATM 2 C C2 IBI . . . B 2 -30.507 -44.816 3.518 1 97.51 ? C2 IBI 201 A 1 HETATM 3 C C5 IBI . . . B 2 -29.075 -45.76 5.869 1 97.05 ? C5 IBI 201 A 1 HETATM 4 C C6 IBI . . . B 2 -30.599 -45.609 5.769 1 97.26 ? C6 IBI 201 A 1 HETATM 5 C C7 IBI . . . B 2 -24.84 -45.592 6.205 1 92.53 ? C7 IBI 201 A 1 HETATM 6 C C8 IBI . . . B 2 -26.253 -45.026 5.989 1 95.48 ? C8 IBI 201 A 1 HETATM 7 C C11 IBI . . . B 2 -24.675 -45.414 3.628 1 89.36 ? C11 IBI 201 A 1 HETATM 8 C C12 IBI . . . B 2 -26.209 -45.333 3.466 1 92.32 ? C12 IBI 201 A 1 HETATM 9 C C15 IBI . . . B 2 -19.337 -46.184 5.217 1 45.84 ? C15 IBI 201 A 1 HETATM 10 C C16 IBI . . . B 2 -18.95 -43.525 5.954 1 27.98 ? C16 IBI 201 A 1 HETATM 11 C C17 IBI . . . B 2 -20.358 -45.456 5.81 1 49.71 ? C17 IBI 201 A 1 HETATM 12 C C18 IBI . . . B 2 -20.182 -44.123 6.167 1 40.23 ? C18 IBI 201 A 1 HETATM 13 C C21 IBI . . . B 2 -11.1 -42.789 3.024 1 20.88 ? C21 IBI 201 A 1 HETATM 14 N N22 IBI . . . B 2 -12.013 -45.094 2.488 1 20.08 ? N22 IBI 201 A 1 HETATM 15 C C24 IBI . . . B 2 -13.304 -44.718 3.149 1 17.84 ? C24 IBI 201 A 1 HETATM 16 C C31 IBI . . . B 2 -11.313 -41.829 1.792 1 23.72 ? C31 IBI 201 A 1 HETATM 17 C C32 IBI . . . B 2 -12.56 -42.244 0.968 1 22.01 ? C32 IBI 201 A 1 HETATM 18 C C33 IBI . . . B 2 -12.295 -41.575 4.957 1 24.06 ? C33 IBI 201 A 1 HETATM 19 C C34 IBI . . . B 2 -13.105 -40.383 4.373 1 26.86 ? C34 IBI 201 A 1 HETATM 20 C C35 IBI . . . B 2 -10.904 -41.087 5.441 1 38.06 ? C35 IBI 201 A 1 HETATM 21 C C36 IBI . . . B 2 -11.887 -46.473 1.979 1 20.06 ? C36 IBI 201 A 1 HETATM 22 C C38 IBI . . . B 2 -18.477 -41.968 7.68 1 50.29 ? C38 IBI 201 A 1 HETATM 23 C C39 IBI . . . B 2 -21.746 -46.113 6.019 1 67.41 ? C39 IBI 201 A 1 HETATM 24 O O40 IBI . . . B 2 -21.971 -46.905 6.879 1 70.88 ? O40 IBI 201 A 1 HETATM 25 O O37 IBI . . . B 2 -18.685 -42.177 6.298 1 44.76 ? O37 IBI 201 A 1 HETATM 26 C C14 IBI . . . B 2 -17.935 -44.25 5.371 1 36.53 ? C14 IBI 201 A 1 HETATM 27 N N19 IBI . . . B 2 -16.695 -43.506 5.19 1 29.85 ? N19 IBI 201 A 1 HETATM 28 C C26 IBI . . . B 2 -15.539 -43.988 4.446 1 28.73 ? C26 IBI 201 A 1 HETATM 29 N N27 IBI . . . B 2 -14.451 -43.186 4.525 1 30.39 ? N27 IBI 201 A 1 HETATM 30 C C25 IBI . . . B 2 -13.358 -43.553 3.889 1 26.5 ? C25 IBI 201 A 1 HETATM 31 N N23 IBI . . . B 2 -12.17 -42.697 3.962 1 21.84 ? N23 IBI 201 A 1 HETATM 32 N N28 IBI . . . B 2 -15.502 -45.155 3.718 1 25.41 ? N28 IBI 201 A 1 HETATM 33 C C29 IBI . . . B 2 -14.39 -45.528 3.075 1 23.13 ? C29 IBI 201 A 1 HETATM 34 C C20 IBI . . . B 2 -10.89 -44.209 2.436 1 20.52 ? C20 IBI 201 A 1 HETATM 35 O O30 IBI . . . B 2 -9.875 -44.551 1.936 1 23.11 ? O30 IBI 201 A 1 HETATM 36 C C13 IBI . . . B 2 -18.102 -45.581 5 1 40.18 ? C13 IBI 201 A 1 HETATM 37 N N41 IBI . . . B 2 -22.745 -45.66 5.016 1 78.96 ? N41 IBI 201 A 1 HETATM 38 C C9 IBI . . . B 2 -24.152 -46.072 4.919 1 87.66 ? C9 IBI 201 A 1 HETATM 39 C C10 IBI . . . B 2 -26.957 -45.637 4.771 1 94.86 ? C10 IBI 201 A 1 HETATM 40 N N3 IBI . . . B 2 -28.345 -45.111 4.772 1 96.97 ? N3 IBI 201 A 1 HETATM 41 N N4 IBI . . . B 2 -30.917 -44.495 4.885 1 97.63 ? N4 IBI 201 A 1 HETATM 42 C C42 IBI . . . B 2 -32.358 -44.165 4.982 1 100.03 ? C42 IBI 201 A 1 HETATM 43 C C43 IBI . . . B 2 -32.548 -42.657 5.332 1 101.48 ? C43 IBI 201 A 1 HETATM 44 C C45 IBI . . . B 2 -33.025 -42.316 6.749 1 101.96 ? C45 IBI 201 A 1 HETATM 45 C C44 IBI . . . B 2 -31.569 -42.053 6.347 1 100.42 ? C44 IBI 201 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 45 #