data_7LAL # _model_server_result.job_id WSDVUeQZZMdFSp7rtntT7w _model_server_result.datetime_utc '2024-12-01 13:42:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":602}' # _entry.id 7LAL # _exptl.entry_id 7LAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LAL _cell.length_a 107.724 _cell.length_b 107.724 _cell.length_c 239.735 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L 1 1 C,D,F,G,M,N,O,P,Q,R,S,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N ? 7 M N N ? 7 N N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 4 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 C 1 NAG B 630 NAG 3 n E NAG 2 C 2 NAG B 631 NAG 4 n F NAG 1 F 1 NAG B 640 NAG 4 n F NAG 2 F 2 NAG B 641 NAG 4 n F BMA 3 F 3 BMA B 642 BMA 4 n F FUC 4 F 4 FUC B 645 FUC 4 n G NAG 1 G 1 NAG E 640 NAG 4 n G NAG 2 G 2 NAG E 641 NAG 4 n G BMA 3 G 3 BMA E 642 BMA 4 n G FUC 4 G 4 FUC E 645 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 1 1_555 A SG CYS 14 A CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? disulf ? disulf2 B SG CYS 3 B CYS 115 1_555 B SG CYS 13 B CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? disulf ? disulf3 B SG CYS 7 B CYS 119 1_555 B SG CYS 31 B CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? disulf ? disulf4 B SG CYS 41 B CYS 153 1_555 D SG CYS 41 E CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? disulf ? disulf5 B SG CYS 109 B CYS 221 1_555 B SG CYS 120 B CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? disulf ? disulf6 B SG CYS 328 B CYS 440 1_555 B SG CYS 385 B CYS 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? disulf ? disulf7 C SG CYS 1 D CYS 1 1_555 C SG CYS 14 D CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? disulf ? disulf8 D SG CYS 3 E CYS 115 1_555 D SG CYS 13 E CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? disulf ? disulf9 D SG CYS 7 E CYS 119 1_555 D SG CYS 31 E CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? disulf ? disulf10 D SG CYS 109 E CYS 221 1_555 D SG CYS 120 E CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? disulf ? disulf11 D SG CYS 328 E CYS 440 1_555 D SG CYS 385 E CYS 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? disulf ? disulf12 D SG CYS 426 E CYS 538 1_555 D SG CYS 452 E CYS 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? covale ? covale1 B ND2 ASN 113 B ASN 225 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.214 ? covale ? covale2 D ND2 ASN 77 E ASN 189 1_555 P C1 NAG . E NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale3 D SD MET 131 E MET 243 1_555 O CBB HEM . E HEM 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.7 ? covale ? covale4 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale5 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale6 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? covale ? covale7 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale8 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale9 G O6 NAG . G NAG 1 1_555 G C1 FUC . G FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale10 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? metalc ? metalc1 A O ASP 96 A ASP 96 1_555 L CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc2 A OD1 ASP 96 A ASP 96 1_555 L CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc3 B O THR 56 B THR 168 1_555 L CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc4 B OG1 THR 56 B THR 168 1_555 L CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc5 B O PHE 58 B PHE 170 1_555 L CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc6 B OD1 ASP 60 B ASP 172 1_555 L CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 B OG SER 62 B SER 174 1_555 L CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc8 B NE2 HIS 224 B HIS 336 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc9 C O ASP 96 D ASP 96 1_555 S CA CA . E CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc10 C OD1 ASP 96 D ASP 96 1_555 S CA CA . E CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc11 D O THR 56 E THR 168 1_555 S CA CA . E CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc12 D OG1 THR 56 E THR 168 1_555 S CA CA . E CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc13 D O PHE 58 E PHE 170 1_555 S CA CA . E CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc14 D OD1 ASP 60 E ASP 172 1_555 S CA CA . E CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc15 D OG SER 62 E SER 174 1_555 S CA CA . E CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc16 D NE2 HIS 224 E HIS 336 1_555 O FE HEM . E HEM 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 347 n n C1 O1 MAN sing 348 n n C1 O5 MAN sing 349 n n C1 H1 MAN sing 350 n n C2 C3 MAN sing 351 n n C2 O2 MAN sing 352 n n C2 H2 MAN sing 353 n n C3 C4 MAN sing 354 n n C3 O3 MAN sing 355 n n C3 H3 MAN sing 356 n n C4 C5 MAN sing 357 n n C4 O4 MAN sing 358 n n C4 H4 MAN sing 359 n n C5 C6 MAN sing 360 n n C5 O5 MAN sing 361 n n C5 H5 MAN sing 362 n n C6 O6 MAN sing 363 n n C6 H61 MAN sing 364 n n C6 H62 MAN sing 365 n n O1 HO1 MAN sing 366 n n O2 HO2 MAN sing 367 n n O3 HO3 MAN sing 368 n n O4 HO4 MAN sing 369 n n O6 HO6 MAN sing 370 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7LAL _atom_sites.fract_transf_matrix[1][1] 0.009283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 CL A 1 201 1 CL CL . I 6 HEM B 1 601 605 HEM HEM . J 7 MAN B 1 602 643 MAN MAN . K 7 MAN B 1 603 644 MAN MAN . L 8 CA B 1 604 1 CA CA . M 7 MAN E 1 601 643 MAN MAN . N 7 MAN E 1 602 644 MAN MAN . O 6 HEM E 1 603 605 HEM HEM . P 9 NAG E 1 604 620 NAG NAG . Q 9 NAG E 1 605 630 NAG NAG . R 9 NAG E 1 606 631 NAG NAG . S 8 CA E 1 607 2 CA CA . T 10 XSG E 1 608 1 XSG LG1 . U 11 HOH D 1 201 3 HOH HOH . U 11 HOH D 2 202 5 HOH HOH . V 11 HOH E 1 701 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . J 7 -9.352 -21.941 23.423 1 112.48 ? C1 MAN 602 B 1 HETATM 2 C C2 MAN . . . J 7 -10.179 -21.361 24.579 1 115.8 ? C2 MAN 602 B 1 HETATM 3 C C3 MAN . . . J 7 -11.034 -22.476 25.168 1 112.76 ? C3 MAN 602 B 1 HETATM 4 C C4 MAN . . . J 7 -11.888 -23.17 24.102 1 111.4 ? C4 MAN 602 B 1 HETATM 5 C C5 MAN . . . J 7 -11.047 -23.584 22.888 1 109.98 ? C5 MAN 602 B 1 HETATM 6 C C6 MAN . . . J 7 -11.885 -24.047 21.715 1 107.65 ? C6 MAN 602 B 1 HETATM 7 O O2 MAN . . . J 7 -10.99 -20.259 24.16 1 122.61 ? O2 MAN 602 B 1 HETATM 8 O O3 MAN . . . J 7 -11.823 -21.978 26.242 1 113.8 ? O3 MAN 602 B 1 HETATM 9 O O4 MAN . . . J 7 -12.466 -24.343 24.662 1 109.92 ? O4 MAN 602 B 1 HETATM 10 O O5 MAN . . . J 7 -10.237 -22.484 22.433 1 114.21 ? O5 MAN 602 B 1 HETATM 11 O O6 MAN . . . J 7 -11.539 -23.429 20.474 1 106.87 ? O6 MAN 602 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #