data_7LAL # _model_server_result.job_id Wqnhka7lndlC4_wzxwJJpg _model_server_result.datetime_utc '2024-12-01 13:51:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":608}' # _entry.id 7LAL # _exptl.entry_id 7LAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.477 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-[(1R)-3-{[(1R)-2,3-dihydro-1H-inden-1-yl]amino}-1-phenylpropyl]-3H-[1,2,3]triazolo[4,5-b]pyridin-5-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LAL _cell.length_a 107.724 _cell.length_b 107.724 _cell.length_c 239.735 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L 1 1 C,D,F,G,M,N,O,P,Q,R,S,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id T _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 4 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 C 1 NAG B 630 NAG 3 n E NAG 2 C 2 NAG B 631 NAG 4 n F NAG 1 F 1 NAG B 640 NAG 4 n F NAG 2 F 2 NAG B 641 NAG 4 n F BMA 3 F 3 BMA B 642 BMA 4 n F FUC 4 F 4 FUC B 645 FUC 4 n G NAG 1 G 1 NAG E 640 NAG 4 n G NAG 2 G 2 NAG E 641 NAG 4 n G BMA 3 G 3 BMA E 642 BMA 4 n G FUC 4 G 4 FUC E 645 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 1 1_555 A SG CYS 14 A CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? disulf ? disulf2 B SG CYS 3 B CYS 115 1_555 B SG CYS 13 B CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? disulf ? disulf3 B SG CYS 7 B CYS 119 1_555 B SG CYS 31 B CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? disulf ? disulf4 B SG CYS 41 B CYS 153 1_555 D SG CYS 41 E CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? disulf ? disulf5 B SG CYS 109 B CYS 221 1_555 B SG CYS 120 B CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? disulf ? disulf6 B SG CYS 328 B CYS 440 1_555 B SG CYS 385 B CYS 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? disulf ? disulf7 C SG CYS 1 D CYS 1 1_555 C SG CYS 14 D CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? disulf ? disulf8 D SG CYS 3 E CYS 115 1_555 D SG CYS 13 E CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? disulf ? disulf9 D SG CYS 7 E CYS 119 1_555 D SG CYS 31 E CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? disulf ? disulf10 D SG CYS 109 E CYS 221 1_555 D SG CYS 120 E CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? disulf ? disulf11 D SG CYS 328 E CYS 440 1_555 D SG CYS 385 E CYS 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? disulf ? disulf12 D SG CYS 426 E CYS 538 1_555 D SG CYS 452 E CYS 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? covale ? covale1 B ND2 ASN 113 B ASN 225 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.214 ? covale ? covale2 D ND2 ASN 77 E ASN 189 1_555 P C1 NAG . E NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale3 D SD MET 131 E MET 243 1_555 O CBB HEM . E HEM 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.7 ? covale ? covale4 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale5 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale6 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? covale ? covale7 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale8 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale9 G O6 NAG . G NAG 1 1_555 G C1 FUC . G FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale10 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? metalc ? metalc1 A O ASP 96 A ASP 96 1_555 L CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc2 A OD1 ASP 96 A ASP 96 1_555 L CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc3 B O THR 56 B THR 168 1_555 L CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc4 B OG1 THR 56 B THR 168 1_555 L CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc5 B O PHE 58 B PHE 170 1_555 L CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc6 B OD1 ASP 60 B ASP 172 1_555 L CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 B OG SER 62 B SER 174 1_555 L CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc8 B NE2 HIS 224 B HIS 336 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc9 C O ASP 96 D ASP 96 1_555 S CA CA . E CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc10 C OD1 ASP 96 D ASP 96 1_555 S CA CA . E CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc11 D O THR 56 E THR 168 1_555 S CA CA . E CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc12 D OG1 THR 56 E THR 168 1_555 S CA CA . E CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc13 D O PHE 58 E PHE 170 1_555 S CA CA . E CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc14 D OD1 ASP 60 E ASP 172 1_555 S CA CA . E CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc15 D OG SER 62 E SER 174 1_555 S CA CA . E CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc16 D NE2 HIS 224 E HIS 336 1_555 O FE HEM . E HEM 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? # _chem_comp.formula 'C23 H24 N6' _chem_comp.formula_weight 384.477 _chem_comp.id XSG _chem_comp.mon_nstd_flag . _chem_comp.name 7-[(1R)-3-{[(1R)-2,3-dihydro-1H-inden-1-yl]amino}-1-phenylpropyl]-3H-[1,2,3]triazolo[4,5-b]pyridin-5-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5 C1 XSG sing 559 n n N C1 XSG doub 560 n y N C2 XSG sing 561 n y N4 C2 XSG sing 562 n y N4 N3 XSG sing 563 n y C1 C XSG sing 564 n y C9 C10 XSG doub 565 n y C9 C8 XSG sing 566 n y C10 C11 XSG sing 567 n y C2 C3 XSG doub 568 n y N3 N2 XSG doub 569 n y C8 C7 XSG doub 570 n y C11 C6 XSG doub 571 n y C C4 XSG doub 572 n y C3 N2 XSG sing 573 n y C3 C4 XSG sing 574 n y C7 C6 XSG sing 575 n y C4 C5 XSG sing 576 n n C6 C5 XSG sing 577 n n C5 C12 XSG sing 578 n n C12 C13 XSG sing 579 n n C16 C15 XSG sing 580 n n C16 C17 XSG sing 581 n n C15 C14 XSG sing 582 n n C13 N1 XSG sing 583 n n N1 C14 XSG sing 584 n n C17 C22 XSG doub 585 n y C17 C18 XSG sing 586 n y C14 C18 XSG sing 587 n n C22 C21 XSG sing 588 n y C18 C19 XSG doub 589 n y C21 C20 XSG doub 590 n y C19 C20 XSG sing 591 n y C13 H1 XSG sing 592 n n C13 H2 XSG sing 593 n n C16 H3 XSG sing 594 n n C16 H4 XSG sing 595 n n C15 H5 XSG sing 596 n n C15 H6 XSG sing 597 n n C19 H7 XSG sing 598 n n C20 H8 XSG sing 599 n n C21 H9 XSG sing 600 n n C22 H10 XSG sing 601 n n C11 H11 XSG sing 602 n n C12 H12 XSG sing 603 n n C12 H13 XSG sing 604 n n N5 H14 XSG sing 605 n n N5 H15 XSG sing 606 n n N4 H16 XSG sing 607 n n C H17 XSG sing 608 n n C5 H18 XSG sing 609 n n C10 H19 XSG sing 610 n n C9 H20 XSG sing 611 n n C8 H21 XSG sing 612 n n C7 H22 XSG sing 613 n n N1 H23 XSG sing 614 n n C14 H25 XSG sing 615 n n # _atom_sites.entry_id 7LAL _atom_sites.fract_transf_matrix[1][1] 0.009283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 CL A 1 201 1 CL CL . I 6 HEM B 1 601 605 HEM HEM . J 7 MAN B 1 602 643 MAN MAN . K 7 MAN B 1 603 644 MAN MAN . L 8 CA B 1 604 1 CA CA . M 7 MAN E 1 601 643 MAN MAN . N 7 MAN E 1 602 644 MAN MAN . O 6 HEM E 1 603 605 HEM HEM . P 9 NAG E 1 604 620 NAG NAG . Q 9 NAG E 1 605 630 NAG NAG . R 9 NAG E 1 606 631 NAG NAG . S 8 CA E 1 607 2 CA CA . T 10 XSG E 1 608 1 XSG LG1 . U 11 HOH D 1 201 3 HOH HOH . U 11 HOH D 2 202 5 HOH HOH . V 11 HOH E 1 701 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 XSG . . . T 10 16.442 -49.512 48.539 1 72.51 ? C13 XSG 608 E 1 HETATM 2 C C18 XSG . . . T 10 18.98 -50.261 49.909 1 86.29 ? C18 XSG 608 E 1 HETATM 3 C C17 XSG . . . T 10 19.339 -51.33 49.093 1 87.71 ? C17 XSG 608 E 1 HETATM 4 C C16 XSG . . . T 10 19.731 -50.846 47.721 1 86.83 ? C16 XSG 608 E 1 HETATM 5 C C15 XSG . . . T 10 19.697 -49.319 47.863 1 84.98 ? C15 XSG 608 E 1 HETATM 6 C C19 XSG . . . T 10 18.721 -50.465 51.262 1 87.9 ? C19 XSG 608 E 1 HETATM 7 C C20 XSG . . . T 10 18.752 -51.755 51.778 1 87.28 ? C20 XSG 608 E 1 HETATM 8 C C21 XSG . . . T 10 19.056 -52.83 50.955 1 86.13 ? C21 XSG 608 E 1 HETATM 9 C C22 XSG . . . T 10 19.363 -52.619 49.616 1 86.61 ? C22 XSG 608 E 1 HETATM 10 C C11 XSG . . . T 10 16.492 -50.392 45.198 1 64.01 ? C11 XSG 608 E 1 HETATM 11 C C12 XSG . . . T 10 15.431 -48.935 47.549 1 70.5 ? C12 XSG 608 E 1 HETATM 12 N N5 XSG . . . T 10 13.035 -46.257 43.943 1 62.3 ? N5 XSG 608 E 1 HETATM 13 C C1 XSG . . . T 10 12.813 -47.478 44.471 1 61.07 ? C1 XSG 608 E 1 HETATM 14 N N XSG . . . T 10 11.683 -48.114 44.087 1 58.47 ? N XSG 608 E 1 HETATM 15 C C2 XSG . . . T 10 11.479 -49.341 44.611 1 59.72 ? C2 XSG 608 E 1 HETATM 16 N N4 XSG . . . T 10 10.362 -50.228 44.335 1 58.14 ? N4 XSG 608 E 1 HETATM 17 N N3 XSG . . . T 10 10.608 -51.38 45.061 1 57.65 ? N3 XSG 608 E 1 HETATM 18 N N2 XSG . . . T 10 11.728 -51.285 45.743 1 56.8 ? N2 XSG 608 E 1 HETATM 19 C C3 XSG . . . T 10 12.328 -50.008 45.494 1 59.98 ? C3 XSG 608 E 1 HETATM 20 C C4 XSG . . . T 10 13.506 -49.336 45.885 1 64.5 ? C4 XSG 608 E 1 HETATM 21 C C XSG . . . T 10 13.712 -48.064 45.355 1 64.34 ? C XSG 608 E 1 HETATM 22 C C5 XSG . . . T 10 14.553 -49.976 46.795 1 67.37 ? C5 XSG 608 E 1 HETATM 23 C C6 XSG . . . T 10 15.393 -50.883 45.899 1 66.79 ? C6 XSG 608 E 1 HETATM 24 C C10 XSG . . . T 10 17.34 -51.253 44.517 1 58 ? C10 XSG 608 E 1 HETATM 25 C C9 XSG . . . T 10 17.08 -52.605 44.495 1 57.44 ? C9 XSG 608 E 1 HETATM 26 C C8 XSG . . . T 10 15.971 -53.101 45.152 1 58.47 ? C8 XSG 608 E 1 HETATM 27 C C7 XSG . . . T 10 15.137 -52.248 45.854 1 63.83 ? C7 XSG 608 E 1 HETATM 28 N N1 XSG . . . T 10 17.435 -48.496 48.934 1 75.08 ? N1 XSG 608 E 1 HETATM 29 C C14 XSG . . . T 10 18.818 -48.985 49.123 1 81.22 ? C14 XSG 608 E 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #