data_7LAZ
#
_model_server_result.job_id            yoCBvOvLz9PT0-_E8D-rzA 
_model_server_result.datetime_utc      '2024-11-26 22:08:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7laz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    7LAZ 
#
_exptl.entry_id    7LAZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              638.802 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            11-cyclopentyl-2-({2-ethoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LAZ 
_cell.length_a            81.903 
_cell.length_b            81.903 
_cell.length_c            120.242 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LAZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C36 H46 N8 O3' 
_chem_comp.formula_weight    638.802 
_chem_comp.id                VYJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              11-cyclopentyl-2-({2-ethoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C22 VYJ sing 376 n n 
C21 C13 VYJ sing 377 n n 
C22 N10 VYJ sing 378 n n 
C18 C19 VYJ sing 379 n n 
C18 N17 VYJ sing 380 n n 
C20 N17 VYJ sing 381 n n 
N14 C19 VYJ sing 382 n n 
N14 C13 VYJ sing 383 n n 
N14 C15 VYJ sing 384 n n 
C16 N17 VYJ sing 385 n n 
C16 C15 VYJ sing 386 n n 
C13 C12 VYJ sing 387 n n 
O23 C09 VYJ doub 388 n n 
N10 C09 VYJ sing 389 n n 
N10 C11 VYJ sing 390 n n 
C09 C08 VYJ sing 391 n n 
C12 C11 VYJ sing 392 n n 
C08 C07 VYJ doub 393 n y 
C08 C24 VYJ sing 394 n y 
C39 C40 VYJ sing 395 n n 
C39 C38 VYJ sing 396 n n 
C40 C41 VYJ sing 397 n n 
C07 C06 VYJ sing 398 n y 
C24 C04 VYJ doub 399 n y 
C41 C37 VYJ sing 400 n n 
C38 C37 VYJ sing 401 n n 
C06 C05 VYJ doub 402 n y 
C04 C05 VYJ sing 403 n y 
C04 O03 VYJ sing 404 n n 
C02 O03 VYJ sing 405 n n 
C02 C01 VYJ sing 406 n n 
C37 N34 VYJ sing 407 n n 
C05 N25 VYJ sing 408 n n 
N25 C26 VYJ sing 409 n n 
N34 C35 VYJ sing 410 n n 
N34 C33 VYJ sing 411 n n 
N36 C26 VYJ doub 412 n y 
N36 C35 VYJ sing 413 n y 
C42 C33 VYJ doub 414 n y 
C42 C43 VYJ sing 415 n y 
C26 N27 VYJ sing 416 n y 
C35 C29 VYJ doub 417 n y 
C33 C32 VYJ sing 418 n y 
C43 C44 VYJ doub 419 n y 
N27 C28 VYJ doub 420 n y 
C29 C28 VYJ sing 421 n y 
C29 N30 VYJ sing 422 n n 
C32 C31 VYJ sing 423 n n 
C32 C45 VYJ doub 424 n y 
C44 C45 VYJ sing 425 n y 
N30 C31 VYJ sing 426 n n 
N30 C47 VYJ sing 427 n n 
C31 O46 VYJ doub 428 n n 
C13 H1 VYJ sing 429 n n 
C15 H2 VYJ sing 430 n n 
C15 H3 VYJ sing 431 n n 
C20 H4 VYJ sing 432 n n 
C20 H5 VYJ sing 433 n n 
C20 H6 VYJ sing 434 n n 
C21 H7 VYJ sing 435 n n 
C21 H8 VYJ sing 436 n n 
C22 H9 VYJ sing 437 n n 
C22 H10 VYJ sing 438 n n 
C24 H11 VYJ sing 439 n n 
C28 H12 VYJ sing 440 n n 
C01 H13 VYJ sing 441 n n 
C01 H14 VYJ sing 442 n n 
C01 H15 VYJ sing 443 n n 
C02 H16 VYJ sing 444 n n 
C02 H17 VYJ sing 445 n n 
C06 H18 VYJ sing 446 n n 
C07 H19 VYJ sing 447 n n 
C11 H20 VYJ sing 448 n n 
C11 H21 VYJ sing 449 n n 
C12 H22 VYJ sing 450 n n 
C12 H23 VYJ sing 451 n n 
C16 H24 VYJ sing 452 n n 
C16 H25 VYJ sing 453 n n 
C18 H26 VYJ sing 454 n n 
C18 H27 VYJ sing 455 n n 
C19 H28 VYJ sing 456 n n 
C19 H29 VYJ sing 457 n n 
C37 H30 VYJ sing 458 n n 
C38 H31 VYJ sing 459 n n 
C38 H32 VYJ sing 460 n n 
C39 H33 VYJ sing 461 n n 
C39 H34 VYJ sing 462 n n 
C40 H35 VYJ sing 463 n n 
C40 H36 VYJ sing 464 n n 
C41 H37 VYJ sing 465 n n 
C41 H38 VYJ sing 466 n n 
C42 H39 VYJ sing 467 n n 
C43 H40 VYJ sing 468 n n 
C44 H41 VYJ sing 469 n n 
C45 H42 VYJ sing 470 n n 
C47 H43 VYJ sing 471 n n 
C47 H44 VYJ sing 472 n n 
C47 H45 VYJ sing 473 n n 
N25 H48 VYJ sing 474 n n 
#
_atom_sites.entry_id                     7LAZ 
_atom_sites.fract_transf_matrix[1][1]    0.01221 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01221 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008317 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 VYJ A 1 201 1 VYJ ERK . 
D 2 VYJ B 1 201 2 VYJ ERK . 
E 3 HOH A 1 301 5 HOH HOH . 
E 3 HOH A 2 302 29 HOH HOH . 
E 3 HOH A 3 303 14 HOH HOH . 
E 3 HOH A 4 304 11 HOH HOH . 
E 3 HOH A 5 305 13 HOH HOH . 
E 3 HOH A 6 306 28 HOH HOH . 
E 3 HOH A 7 307 37 HOH HOH . 
E 3 HOH A 8 308 10 HOH HOH . 
E 3 HOH A 9 309 40 HOH HOH . 
E 3 HOH A 10 310 34 HOH HOH . 
E 3 HOH A 11 311 19 HOH HOH . 
E 3 HOH A 12 312 8 HOH HOH . 
E 3 HOH A 13 313 25 HOH HOH . 
E 3 HOH A 14 314 7 HOH HOH . 
E 3 HOH A 15 315 30 HOH HOH . 
E 3 HOH A 16 316 3 HOH HOH . 
E 3 HOH A 17 317 17 HOH HOH . 
E 3 HOH A 18 318 42 HOH HOH . 
E 3 HOH A 19 319 18 HOH HOH . 
E 3 HOH A 20 320 12 HOH HOH . 
E 3 HOH A 21 321 2 HOH HOH . 
E 3 HOH A 22 322 32 HOH HOH . 
E 3 HOH A 23 323 45 HOH HOH . 
F 3 HOH B 1 301 15 HOH HOH . 
F 3 HOH B 2 302 16 HOH HOH . 
F 3 HOH B 3 303 38 HOH HOH . 
F 3 HOH B 4 304 22 HOH HOH . 
F 3 HOH B 5 305 36 HOH HOH . 
F 3 HOH B 6 306 43 HOH HOH . 
F 3 HOH B 7 307 41 HOH HOH . 
F 3 HOH B 8 308 1 HOH HOH . 
F 3 HOH B 9 309 39 HOH HOH . 
F 3 HOH B 10 310 33 HOH HOH . 
F 3 HOH B 11 311 26 HOH HOH . 
F 3 HOH B 12 312 27 HOH HOH . 
F 3 HOH B 13 313 35 HOH HOH . 
F 3 HOH B 14 314 21 HOH HOH . 
F 3 HOH B 15 315 44 HOH HOH . 
F 3 HOH B 16 316 31 HOH HOH . 
F 3 HOH B 17 317 4 HOH HOH . 
F 3 HOH B 18 318 6 HOH HOH . 
F 3 HOH B 19 319 9 HOH HOH . 
F 3 HOH B 20 320 23 HOH HOH . 
F 3 HOH B 21 321 24 HOH HOH . 
F 3 HOH B 22 322 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 VYJ . . . C 2 18.71 3.615 36.969 1 93.62 ? C13 VYJ 201 A 1 
HETATM 2 C C15 VYJ . . . C 2 17.157 2.963 38.953 1 89.9 ? C15 VYJ 201 A 1 
HETATM 3 C C20 VYJ . . . C 2 18.829 1.426 42.095 1 85.33 ? C20 VYJ 201 A 1 
HETATM 4 C C21 VYJ . . . C 2 20.271 3.679 36.976 1 87.57 ? C21 VYJ 201 A 1 
HETATM 5 C C22 VYJ . . . C 2 20.828 4.858 36.113 1 84.81 ? C22 VYJ 201 A 1 
HETATM 6 C C24 VYJ . . . C 2 18.417 6.58 32.503 1 39.37 ? C24 VYJ 201 A 1 
HETATM 7 C C26 VYJ . . . C 2 18.553 7.78 27.742 1 36.85 ? C26 VYJ 201 A 1 
HETATM 8 C C28 VYJ . . . C 2 18.054 8.209 25.483 1 37.39 ? C28 VYJ 201 A 1 
HETATM 9 C C01 VYJ . . . C 2 14.423 6.243 31.97 1 48.01 ? C01 VYJ 201 A 1 
HETATM 10 C C02 VYJ . . . C 2 15.895 5.825 31.816 1 47.26 ? C02 VYJ 201 A 1 
HETATM 11 C C04 VYJ . . . C 2 17.923 6.862 31.217 1 44.89 ? C04 VYJ 201 A 1 
HETATM 12 C C05 VYJ . . . C 2 18.812 7.212 30.175 1 36.56 ? C05 VYJ 201 A 1 
HETATM 13 C C06 VYJ . . . C 2 20.199 7.265 30.458 1 31.28 ? C06 VYJ 201 A 1 
HETATM 14 C C07 VYJ . . . C 2 20.678 6.967 31.743 1 36.58 ? C07 VYJ 201 A 1 
HETATM 15 C C08 VYJ . . . C 2 19.803 6.626 32.811 1 46.61 ? C08 VYJ 201 A 1 
HETATM 16 C C09 VYJ . . . C 2 20.342 6.31 34.115 1 64.19 ? C09 VYJ 201 A 1 
HETATM 17 C C11 VYJ . . . C 2 19.145 4.109 34.45 1 83.82 ? C11 VYJ 201 A 1 
HETATM 18 C C12 VYJ . . . C 2 18.161 3.527 35.508 1 88.78 ? C12 VYJ 201 A 1 
HETATM 19 C C16 VYJ . . . C 2 17.741 2.919 40.392 1 92.1 ? C16 VYJ 201 A 1 
HETATM 20 C C18 VYJ . . . C 2 19.47 1.248 39.678 1 92.3 ? C18 VYJ 201 A 1 
HETATM 21 C C19 VYJ . . . C 2 18.926 1.298 38.222 1 94.14 ? C19 VYJ 201 A 1 
HETATM 22 C C29 VYJ . . . C 2 19.419 8.4 25.183 1 40.5 ? C29 VYJ 201 A 1 
HETATM 23 C C31 VYJ . . . C 2 20.783 9.575 23.567 1 29.74 ? C31 VYJ 201 A 1 
HETATM 24 C C32 VYJ . . . C 2 21.639 10.273 24.478 1 30.17 ? C32 VYJ 201 A 1 
HETATM 25 C C33 VYJ . . . C 2 22.097 9.696 25.693 1 31.86 ? C33 VYJ 201 A 1 
HETATM 26 C C35 VYJ . . . C 2 20.35 8.267 26.251 1 39.15 ? C35 VYJ 201 A 1 
HETATM 27 C C37 VYJ . . . C 2 22.62 7.558 26.868 1 34.01 ? C37 VYJ 201 A 1 
HETATM 28 C C38 VYJ . . . C 2 22.195 6.073 26.941 1 34.95 ? C38 VYJ 201 A 1 
HETATM 29 C C39 VYJ . . . C 2 23.413 5.314 27.491 1 35.41 ? C39 VYJ 201 A 1 
HETATM 30 C C40 VYJ . . . C 2 24.637 6.054 26.922 1 31.55 ? C40 VYJ 201 A 1 
HETATM 31 C C41 VYJ . . . C 2 24.105 7.423 26.421 1 32.99 ? C41 VYJ 201 A 1 
HETATM 32 C C42 VYJ . . . C 2 22.967 10.463 26.522 1 33.83 ? C42 VYJ 201 A 1 
HETATM 33 C C43 VYJ . . . C 2 23.387 11.745 26.158 1 34.85 ? C43 VYJ 201 A 1 
HETATM 34 C C44 VYJ . . . C 2 22.935 12.304 24.958 1 33.36 ? C44 VYJ 201 A 1 
HETATM 35 C C45 VYJ . . . C 2 22.074 11.579 24.128 1 28.9 ? C45 VYJ 201 A 1 
HETATM 36 C C47 VYJ . . . C 2 19.162 7.953 22.799 1 30.21 ? C47 VYJ 201 A 1 
HETATM 37 N N10 VYJ . . . C 2 20.104 5.13 34.871 1 79.53 ? N10 VYJ 201 A 1 
HETATM 38 N N14 VYJ . . . C 2 18.177 2.569 37.923 1 95.33 ? N14 VYJ 201 A 1 
HETATM 39 N N17 VYJ . . . C 2 18.401 1.599 40.676 1 93.4 ? N17 VYJ 201 A 1 
HETATM 40 N N25 VYJ . . . C 2 18.177 7.467 28.999 1 33.2 ? N25 VYJ 201 A 1 
HETATM 41 N N27 VYJ . . . C 2 17.665 7.902 26.735 1 35.57 ? N27 VYJ 201 A 1 
HETATM 42 N N30 VYJ . . . C 2 19.782 8.692 23.891 1 32.04 ? N30 VYJ 201 A 1 
HETATM 43 N N34 VYJ . . . C 2 21.707 8.427 26.108 1 39.39 ? N34 VYJ 201 A 1 
HETATM 44 N N36 VYJ . . . C 2 19.874 7.976 27.49 1 35.13 ? N36 VYJ 201 A 1 
HETATM 45 O O03 VYJ . . . C 2 16.566 6.801 30.989 1 47.06 ? O03 VYJ 201 A 1 
HETATM 46 O O23 VYJ . . . C 2 21.096 7.207 34.587 1 60.85 ? O23 VYJ 201 A 1 
HETATM 47 O O46 VYJ . . . C 2 20.994 9.77 22.338 1 31.78 ? O46 VYJ 201 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           47 
#