data_7LAZ
#
_model_server_result.job_id            oxn6Ws62qBMSV35ZqkhVsg 
_model_server_result.datetime_utc      '2024-11-26 22:51:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7laz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    7LAZ 
#
_exptl.entry_id    7LAZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              638.802 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            11-cyclopentyl-2-({2-ethoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LAZ 
_cell.length_a            81.903 
_cell.length_b            81.903 
_cell.length_c            120.242 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LAZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C36 H46 N8 O3' 
_chem_comp.formula_weight    638.802 
_chem_comp.id                VYJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              11-cyclopentyl-2-({2-ethoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C22 VYJ sing 376 n n 
C21 C13 VYJ sing 377 n n 
C22 N10 VYJ sing 378 n n 
C18 C19 VYJ sing 379 n n 
C18 N17 VYJ sing 380 n n 
C20 N17 VYJ sing 381 n n 
N14 C19 VYJ sing 382 n n 
N14 C13 VYJ sing 383 n n 
N14 C15 VYJ sing 384 n n 
C16 N17 VYJ sing 385 n n 
C16 C15 VYJ sing 386 n n 
C13 C12 VYJ sing 387 n n 
O23 C09 VYJ doub 388 n n 
N10 C09 VYJ sing 389 n n 
N10 C11 VYJ sing 390 n n 
C09 C08 VYJ sing 391 n n 
C12 C11 VYJ sing 392 n n 
C08 C07 VYJ doub 393 n y 
C08 C24 VYJ sing 394 n y 
C39 C40 VYJ sing 395 n n 
C39 C38 VYJ sing 396 n n 
C40 C41 VYJ sing 397 n n 
C07 C06 VYJ sing 398 n y 
C24 C04 VYJ doub 399 n y 
C41 C37 VYJ sing 400 n n 
C38 C37 VYJ sing 401 n n 
C06 C05 VYJ doub 402 n y 
C04 C05 VYJ sing 403 n y 
C04 O03 VYJ sing 404 n n 
C02 O03 VYJ sing 405 n n 
C02 C01 VYJ sing 406 n n 
C37 N34 VYJ sing 407 n n 
C05 N25 VYJ sing 408 n n 
N25 C26 VYJ sing 409 n n 
N34 C35 VYJ sing 410 n n 
N34 C33 VYJ sing 411 n n 
N36 C26 VYJ doub 412 n y 
N36 C35 VYJ sing 413 n y 
C42 C33 VYJ doub 414 n y 
C42 C43 VYJ sing 415 n y 
C26 N27 VYJ sing 416 n y 
C35 C29 VYJ doub 417 n y 
C33 C32 VYJ sing 418 n y 
C43 C44 VYJ doub 419 n y 
N27 C28 VYJ doub 420 n y 
C29 C28 VYJ sing 421 n y 
C29 N30 VYJ sing 422 n n 
C32 C31 VYJ sing 423 n n 
C32 C45 VYJ doub 424 n y 
C44 C45 VYJ sing 425 n y 
N30 C31 VYJ sing 426 n n 
N30 C47 VYJ sing 427 n n 
C31 O46 VYJ doub 428 n n 
C13 H1 VYJ sing 429 n n 
C15 H2 VYJ sing 430 n n 
C15 H3 VYJ sing 431 n n 
C20 H4 VYJ sing 432 n n 
C20 H5 VYJ sing 433 n n 
C20 H6 VYJ sing 434 n n 
C21 H7 VYJ sing 435 n n 
C21 H8 VYJ sing 436 n n 
C22 H9 VYJ sing 437 n n 
C22 H10 VYJ sing 438 n n 
C24 H11 VYJ sing 439 n n 
C28 H12 VYJ sing 440 n n 
C01 H13 VYJ sing 441 n n 
C01 H14 VYJ sing 442 n n 
C01 H15 VYJ sing 443 n n 
C02 H16 VYJ sing 444 n n 
C02 H17 VYJ sing 445 n n 
C06 H18 VYJ sing 446 n n 
C07 H19 VYJ sing 447 n n 
C11 H20 VYJ sing 448 n n 
C11 H21 VYJ sing 449 n n 
C12 H22 VYJ sing 450 n n 
C12 H23 VYJ sing 451 n n 
C16 H24 VYJ sing 452 n n 
C16 H25 VYJ sing 453 n n 
C18 H26 VYJ sing 454 n n 
C18 H27 VYJ sing 455 n n 
C19 H28 VYJ sing 456 n n 
C19 H29 VYJ sing 457 n n 
C37 H30 VYJ sing 458 n n 
C38 H31 VYJ sing 459 n n 
C38 H32 VYJ sing 460 n n 
C39 H33 VYJ sing 461 n n 
C39 H34 VYJ sing 462 n n 
C40 H35 VYJ sing 463 n n 
C40 H36 VYJ sing 464 n n 
C41 H37 VYJ sing 465 n n 
C41 H38 VYJ sing 466 n n 
C42 H39 VYJ sing 467 n n 
C43 H40 VYJ sing 468 n n 
C44 H41 VYJ sing 469 n n 
C45 H42 VYJ sing 470 n n 
C47 H43 VYJ sing 471 n n 
C47 H44 VYJ sing 472 n n 
C47 H45 VYJ sing 473 n n 
N25 H48 VYJ sing 474 n n 
#
_atom_sites.entry_id                     7LAZ 
_atom_sites.fract_transf_matrix[1][1]    0.01221 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01221 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008317 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 VYJ A 1 201 1 VYJ ERK . 
D 2 VYJ B 1 201 2 VYJ ERK . 
E 3 HOH A 1 301 5 HOH HOH . 
E 3 HOH A 2 302 29 HOH HOH . 
E 3 HOH A 3 303 14 HOH HOH . 
E 3 HOH A 4 304 11 HOH HOH . 
E 3 HOH A 5 305 13 HOH HOH . 
E 3 HOH A 6 306 28 HOH HOH . 
E 3 HOH A 7 307 37 HOH HOH . 
E 3 HOH A 8 308 10 HOH HOH . 
E 3 HOH A 9 309 40 HOH HOH . 
E 3 HOH A 10 310 34 HOH HOH . 
E 3 HOH A 11 311 19 HOH HOH . 
E 3 HOH A 12 312 8 HOH HOH . 
E 3 HOH A 13 313 25 HOH HOH . 
E 3 HOH A 14 314 7 HOH HOH . 
E 3 HOH A 15 315 30 HOH HOH . 
E 3 HOH A 16 316 3 HOH HOH . 
E 3 HOH A 17 317 17 HOH HOH . 
E 3 HOH A 18 318 42 HOH HOH . 
E 3 HOH A 19 319 18 HOH HOH . 
E 3 HOH A 20 320 12 HOH HOH . 
E 3 HOH A 21 321 2 HOH HOH . 
E 3 HOH A 22 322 32 HOH HOH . 
E 3 HOH A 23 323 45 HOH HOH . 
F 3 HOH B 1 301 15 HOH HOH . 
F 3 HOH B 2 302 16 HOH HOH . 
F 3 HOH B 3 303 38 HOH HOH . 
F 3 HOH B 4 304 22 HOH HOH . 
F 3 HOH B 5 305 36 HOH HOH . 
F 3 HOH B 6 306 43 HOH HOH . 
F 3 HOH B 7 307 41 HOH HOH . 
F 3 HOH B 8 308 1 HOH HOH . 
F 3 HOH B 9 309 39 HOH HOH . 
F 3 HOH B 10 310 33 HOH HOH . 
F 3 HOH B 11 311 26 HOH HOH . 
F 3 HOH B 12 312 27 HOH HOH . 
F 3 HOH B 13 313 35 HOH HOH . 
F 3 HOH B 14 314 21 HOH HOH . 
F 3 HOH B 15 315 44 HOH HOH . 
F 3 HOH B 16 316 31 HOH HOH . 
F 3 HOH B 17 317 4 HOH HOH . 
F 3 HOH B 18 318 6 HOH HOH . 
F 3 HOH B 19 319 9 HOH HOH . 
F 3 HOH B 20 320 23 HOH HOH . 
F 3 HOH B 21 321 24 HOH HOH . 
F 3 HOH B 22 322 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 VYJ . . . D 2 28.974 18.674 -9.828 1 51.87 ? C13 VYJ 201 B 1 
HETATM 2 C C15 VYJ . . . D 2 26.985 19.654 -11.128 1 58.87 ? C15 VYJ 201 B 1 
HETATM 3 C C20 VYJ . . . D 2 25.489 17.492 -12.545 1 57.43 ? C20 VYJ 201 B 1 
HETATM 4 C C21 VYJ . . . D 2 29.673 20.027 -9.476 1 43.72 ? C21 VYJ 201 B 1 
HETATM 5 C C22 VYJ . . . D 2 31.123 19.942 -8.907 1 36.77 ? C22 VYJ 201 B 1 
HETATM 6 C C24 VYJ . . . D 2 33.069 16.253 -6.811 1 32.59 ? C24 VYJ 201 B 1 
HETATM 7 C C26 VYJ . . . D 2 32.608 13.578 -2.799 1 37.39 ? C26 VYJ 201 B 1 
HETATM 8 C C28 VYJ . . . D 2 31.924 11.851 -1.352 1 30.41 ? C28 VYJ 201 B 1 
HETATM 9 C C01 VYJ . . . D 2 34.383 12.431 -8.202 1 33.68 ? C01 VYJ 201 B 1 
HETATM 10 C C02 VYJ . . . D 2 33.8 13.809 -7.865 1 31.88 ? C02 VYJ 201 B 1 
HETATM 11 C C04 VYJ . . . D 2 33.264 15.145 -5.969 1 33.34 ? C04 VYJ 201 B 1 
HETATM 12 C C05 VYJ . . . D 2 32.93 15.236 -4.61 1 33.81 ? C05 VYJ 201 B 1 
HETATM 13 C C06 VYJ . . . D 2 32.407 16.458 -4.117 1 31.01 ? C06 VYJ 201 B 1 
HETATM 14 C C07 VYJ . . . D 2 32.177 17.543 -4.964 1 32.26 ? C07 VYJ 201 B 1 
HETATM 15 C C08 VYJ . . . D 2 32.511 17.47 -6.335 1 38.56 ? C08 VYJ 201 B 1 
HETATM 16 C C09 VYJ . . . D 2 32.245 18.624 -7.15 1 39.41 ? C09 VYJ 201 B 1 
HETATM 17 C C11 VYJ . . . D 2 30.941 17.456 -8.864 1 34.53 ? C11 VYJ 201 B 1 
HETATM 18 C C12 VYJ . . . D 2 29.407 17.541 -8.863 1 37.34 ? C12 VYJ 201 B 1 
HETATM 19 C C16 VYJ . . . D 2 25.446 19.676 -11.322 1 65.48 ? C16 VYJ 201 B 1 
HETATM 20 C C18 VYJ . . . D 2 25.165 17.623 -10.062 1 56.08 ? C18 VYJ 201 B 1 
HETATM 21 C C19 VYJ . . . D 2 26.692 17.499 -9.808 1 45.31 ? C19 VYJ 201 B 1 
HETATM 22 C C29 VYJ . . . D 2 31.377 12.787 -0.42 1 33.05 ? C29 VYJ 201 B 1 
HETATM 23 C C31 VYJ . . . D 2 30.999 12.967 1.956 1 30.89 ? C31 VYJ 201 B 1 
HETATM 24 C C32 VYJ . . . D 2 31.737 14.179 2.163 1 29.03 ? C32 VYJ 201 B 1 
HETATM 25 C C33 VYJ . . . D 2 31.717 15.254 1.229 1 31.84 ? C33 VYJ 201 B 1 
HETATM 26 C C35 VYJ . . . D 2 31.476 14.153 -0.752 1 28.59 ? C35 VYJ 201 B 1 
HETATM 27 C C37 VYJ . . . D 2 30.391 16.369 -0.544 1 32.21 ? C37 VYJ 201 B 1 
HETATM 28 C C38 VYJ . . . D 2 29.367 16.042 -1.657 1 39.59 ? C38 VYJ 201 B 1 
HETATM 29 C C39 VYJ . . . D 2 28.414 17.24 -1.774 1 37.41 ? C39 VYJ 201 B 1 
HETATM 30 C C40 VYJ . . . D 2 28.294 17.758 -0.332 1 39.18 ? C40 VYJ 201 B 1 
HETATM 31 C C41 VYJ . . . D 2 29.578 17.303 0.4 1 32.64 ? C41 VYJ 201 B 1 
HETATM 32 C C42 VYJ . . . D 2 32.49 16.432 1.499 1 30.94 ? C42 VYJ 201 B 1 
HETATM 33 C C43 VYJ . . . D 2 33.241 16.568 2.68 1 28.82 ? C43 VYJ 201 B 1 
HETATM 34 C C44 VYJ . . . D 2 33.264 15.515 3.603 1 30.46 ? C44 VYJ 201 B 1 
HETATM 35 C C45 VYJ . . . D 2 32.518 14.343 3.343 1 27.72 ? C45 VYJ 201 B 1 
HETATM 36 C C47 VYJ . . . D 2 29.728 11.358 0.625 1 37.14 ? C47 VYJ 201 B 1 
HETATM 37 N N10 VYJ . . . D 2 31.623 18.653 -8.414 1 48.21 ? N10 VYJ 201 B 1 
HETATM 38 N N14 VYJ . . . D 2 27.473 18.77 -10.006 1 58.84 ? N14 VYJ 201 B 1 
HETATM 39 N N17 VYJ . . . D 2 24.939 18.272 -11.388 1 64.97 ? N17 VYJ 201 B 1 
HETATM 40 N N25 VYJ . . . D 2 33.189 14.089 -3.914 1 29.53 ? N25 VYJ 201 B 1 
HETATM 41 N N27 VYJ . . . D 2 32.504 12.26 -2.509 1 31.46 ? N27 VYJ 201 B 1 
HETATM 42 N N30 VYJ . . . D 2 30.764 12.367 0.739 1 34.25 ? N30 VYJ 201 B 1 
HETATM 43 N N34 VYJ . . . D 2 31.006 15.164 0.048 1 36.04 ? N34 VYJ 201 B 1 
HETATM 44 N N36 VYJ . . . D 2 32.087 14.479 -1.921 1 28.54 ? N36 VYJ 201 B 1 
HETATM 45 O O03 VYJ . . . D 2 33.806 13.968 -6.433 1 32.95 ? O03 VYJ 201 B 1 
HETATM 46 O O23 VYJ . . . D 2 32.598 19.705 -6.616 1 43.08 ? O23 VYJ 201 B 1 
HETATM 47 O O46 VYJ . . . D 2 30.523 12.418 2.979 1 33.71 ? O46 VYJ 201 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           47 
#