data_7LBC # _model_server_result.job_id CtCOPqA6Y8GbNiuSFBeicg _model_server_result.datetime_utc '2025-04-10 03:44:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lbc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1103}' # _entry.id 7LBC # _exptl.entry_id 7LBC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 190.005 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-[(2-aminoethyl)amino]-4-boronobutanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LBC _cell.length_a 105.216 _cell.length_b 122.681 _cell.length_c 102.507 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LBC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 50 1_555 A SG CYS 47 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 165 A CYS 192 1_555 A SG CYS 169 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? covale ? covale1 A ND2 ASN 68 A ASN 95 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 A ND2 ASN 93 A ASN 120 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 A ND2 ASN 239 A ASN 266 1_555 F C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 A ND2 ASN 317 A ASN 344 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 B OG1 THR 1 B THR 381 1_555 J BAQ XSA . B XSA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 B ND2 ASN 131 B ASN 511 1_555 H C1 NAG . B NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C6 H15 B N2 O4' _chem_comp.formula_weight 190.005 _chem_comp.id XSA _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-[(2-aminoethyl)amino]-4-boronobutanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAR BAQ XSA sing 410 n n BAQ OAS XSA sing 411 n n BAQ CAP XSA sing 412 n n CAP CAG XSA sing 413 n n CAG CAD XSA sing 414 n n OAC CAB XSA doub 415 n n CAD CAB XSA sing 416 n n CAD NAF XSA sing 417 n n CAB OAA XSA sing 418 n n NAF CAH XSA sing 419 n n CAH CAI XSA sing 420 n n N3 CAI XSA sing 421 n n CAD H1 XSA sing 422 n n CAG H2 XSA sing 423 n n CAG H3 XSA sing 424 n n OAA H4 XSA sing 425 n n OAR H5 XSA sing 426 n n OAS H6 XSA sing 427 n n CAP H7 XSA sing 428 n n CAP H8 XSA sing 429 n n NAF H9 XSA sing 430 n n CAH H11 XSA sing 431 n n CAH H12 XSA sing 432 n n CAI H13 XSA sing 433 n n CAI H14 XSA sing 434 n n N3 H15 XSA sing 435 n n N3 H16 XSA sing 436 n n # _atom_sites.entry_id 7LBC _atom_sites.fract_transf_matrix[1][1] 0.009504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008151 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 601 601 NAG NAG . D 3 NAG A 1 602 602 NAG NAG . E 3 NAG A 1 603 603 NAG NAG . F 3 NAG A 1 604 604 NAG NAG . G 4 CL A 1 605 1 CL CL . H 3 NAG B 1 1101 1101 NAG NAG . I 4 CL B 1 1102 2 CL CL . J 5 XSA B 1 1103 1 XSA 265 . K 6 SO4 B 1 1104 1 SO4 SO4 . L 7 HOH A 1 701 111 HOH HOH . L 7 HOH A 2 702 7 HOH HOH . L 7 HOH A 3 703 45 HOH HOH . L 7 HOH A 4 704 26 HOH HOH . L 7 HOH A 5 705 62 HOH HOH . L 7 HOH A 6 706 27 HOH HOH . L 7 HOH A 7 707 19 HOH HOH . L 7 HOH A 8 708 77 HOH HOH . L 7 HOH A 9 709 120 HOH HOH . L 7 HOH A 10 710 25 HOH HOH . L 7 HOH A 11 711 90 HOH HOH . L 7 HOH A 12 712 94 HOH HOH . L 7 HOH A 13 713 118 HOH HOH . L 7 HOH A 14 714 127 HOH HOH . L 7 HOH A 15 715 22 HOH HOH . L 7 HOH A 16 716 23 HOH HOH . L 7 HOH A 17 717 4 HOH HOH . L 7 HOH A 18 718 43 HOH HOH . L 7 HOH A 19 719 124 HOH HOH . L 7 HOH A 20 720 53 HOH HOH . L 7 HOH A 21 721 60 HOH HOH . L 7 HOH A 22 722 57 HOH HOH . L 7 HOH A 23 723 65 HOH HOH . L 7 HOH A 24 724 48 HOH HOH . L 7 HOH A 25 725 12 HOH HOH . L 7 HOH A 26 726 63 HOH HOH . L 7 HOH A 27 727 95 HOH HOH . L 7 HOH A 28 728 34 HOH HOH . L 7 HOH A 29 729 16 HOH HOH . L 7 HOH A 30 730 130 HOH HOH . L 7 HOH A 31 731 11 HOH HOH . L 7 HOH A 32 732 24 HOH HOH . L 7 HOH A 33 733 56 HOH HOH . L 7 HOH A 34 734 125 HOH HOH . L 7 HOH A 35 735 49 HOH HOH . L 7 HOH A 36 736 8 HOH HOH . L 7 HOH A 37 737 114 HOH HOH . L 7 HOH A 38 738 6 HOH HOH . L 7 HOH A 39 739 76 HOH HOH . L 7 HOH A 40 740 84 HOH HOH . L 7 HOH A 41 741 102 HOH HOH . L 7 HOH A 42 742 131 HOH HOH . L 7 HOH A 43 743 50 HOH HOH . L 7 HOH A 44 744 93 HOH HOH . L 7 HOH A 45 745 92 HOH HOH . L 7 HOH A 46 746 21 HOH HOH . L 7 HOH A 47 747 83 HOH HOH . L 7 HOH A 48 748 35 HOH HOH . L 7 HOH A 49 749 113 HOH HOH . L 7 HOH A 50 750 88 HOH HOH . L 7 HOH A 51 751 10 HOH HOH . L 7 HOH A 52 752 112 HOH HOH . L 7 HOH A 53 753 38 HOH HOH . L 7 HOH A 54 754 73 HOH HOH . L 7 HOH A 55 755 1 HOH HOH . L 7 HOH A 56 756 122 HOH HOH . L 7 HOH A 57 757 115 HOH HOH . L 7 HOH A 58 758 64 HOH HOH . L 7 HOH A 59 759 69 HOH HOH . L 7 HOH A 60 760 80 HOH HOH . L 7 HOH A 61 761 54 HOH HOH . L 7 HOH A 62 762 70 HOH HOH . L 7 HOH A 63 763 20 HOH HOH . L 7 HOH A 64 764 105 HOH HOH . L 7 HOH A 65 765 59 HOH HOH . M 7 HOH B 1 1201 134 HOH HOH . M 7 HOH B 2 1202 18 HOH HOH . M 7 HOH B 3 1203 55 HOH HOH . M 7 HOH B 4 1204 2 HOH HOH . M 7 HOH B 5 1205 5 HOH HOH . M 7 HOH B 6 1206 9 HOH HOH . M 7 HOH B 7 1207 52 HOH HOH . M 7 HOH B 8 1208 72 HOH HOH . M 7 HOH B 9 1209 132 HOH HOH . M 7 HOH B 10 1210 61 HOH HOH . M 7 HOH B 11 1211 3 HOH HOH . M 7 HOH B 12 1212 15 HOH HOH . M 7 HOH B 13 1213 96 HOH HOH . M 7 HOH B 14 1214 28 HOH HOH . M 7 HOH B 15 1215 110 HOH HOH . M 7 HOH B 16 1216 41 HOH HOH . M 7 HOH B 17 1217 31 HOH HOH . M 7 HOH B 18 1218 108 HOH HOH . M 7 HOH B 19 1219 44 HOH HOH . M 7 HOH B 20 1220 109 HOH HOH . M 7 HOH B 21 1221 40 HOH HOH . M 7 HOH B 22 1222 36 HOH HOH . M 7 HOH B 23 1223 14 HOH HOH . M 7 HOH B 24 1224 42 HOH HOH . M 7 HOH B 25 1225 46 HOH HOH . M 7 HOH B 26 1226 39 HOH HOH . M 7 HOH B 27 1227 97 HOH HOH . M 7 HOH B 28 1228 66 HOH HOH . M 7 HOH B 29 1229 51 HOH HOH . M 7 HOH B 30 1230 37 HOH HOH . M 7 HOH B 31 1231 133 HOH HOH . M 7 HOH B 32 1232 13 HOH HOH . M 7 HOH B 33 1233 116 HOH HOH . M 7 HOH B 34 1234 74 HOH HOH . M 7 HOH B 35 1235 32 HOH HOH . M 7 HOH B 36 1236 81 HOH HOH . M 7 HOH B 37 1237 58 HOH HOH . M 7 HOH B 38 1238 86 HOH HOH . M 7 HOH B 39 1239 17 HOH HOH . M 7 HOH B 40 1240 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD XSA . . . J 5 -24.829 -26.212 -8.499 1 42.94 ? CAD XSA 1103 B 1 HETATM 2 C CAG XSA . . . J 5 -23.454 -26.264 -9.226 1 42.27 ? CAG XSA 1103 B 1 HETATM 3 O OAA XSA . . . J 5 -25.071 -24.403 -6.964 1 40.58 ? OAA XSA 1103 B 1 HETATM 4 O OAR XSA . . . J 5 -22.04 -29.166 -11.417 1 49.47 ? OAR XSA 1103 B 1 HETATM 5 B BAQ XSA . . . J 5 -22.194 -27.636 -10.924 1 45.6 ? BAQ XSA 1103 B 1 HETATM 6 O OAS XSA . . . J 5 -20.686 -27.361 -10.374 1 44.28 ? OAS XSA 1103 B 1 HETATM 7 C CAP XSA . . . J 5 -23.173 -27.674 -9.809 1 41.96 ? CAP XSA 1103 B 1 HETATM 8 C CAB XSA . . . J 5 -25.272 -24.771 -8.135 1 41.15 ? CAB XSA 1103 B 1 HETATM 9 O OAC XSA . . . J 5 -25.84 -24.083 -9.006 1 38.67 ? OAC XSA 1103 B 1 HETATM 10 N NAF XSA . . . J 5 -24.925 -27.038 -7.264 1 47 ? NAF XSA 1103 B 1 HETATM 11 C CAH XSA . . . J 5 -23.681 -27.427 -6.561 1 45.12 ? CAH XSA 1103 B 1 HETATM 12 C CAI XSA . . . J 5 -24.023 -28.202 -5.276 1 43.01 ? CAI XSA 1103 B 1 HETATM 13 N N3 XSA . . . J 5 -24.123 -29.668 -5.535 1 40.04 ? N3 XSA 1103 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #