data_7LBC
#
_model_server_result.job_id            l3g-yhJyBDoyHkvWiY8xqA 
_model_server_result.datetime_utc      '2025-04-03 15:23:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lbc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    7LBC 
#
_exptl.entry_id    7LBC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LBC 
_cell.length_a            105.216 
_cell.length_b            122.681 
_cell.length_c            102.507 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LBC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 50 1_555 A SG CYS 47 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 165 A CYS 192 1_555 A SG CYS 169 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
covale ? covale1 A ND2 ASN 68 A ASN 95 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale2 A ND2 ASN 93 A ASN 120 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale3 A ND2 ASN 239 A ASN 266 1_555 F C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale4 A ND2 ASN 317 A ASN 344 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale5 B OG1 THR 1 B THR 381 1_555 J BAQ XSA . B XSA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 B ND2 ASN 131 B ASN 511 1_555 H C1 NAG . B NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7LBC 
_atom_sites.fract_transf_matrix[1][1]    0.009504 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008151 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009755 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 601 601 NAG NAG . 
D 3 NAG A 1 602 602 NAG NAG . 
E 3 NAG A 1 603 603 NAG NAG . 
F 3 NAG A 1 604 604 NAG NAG . 
G 4 CL A 1 605 1 CL CL . 
H 3 NAG B 1 1101 1101 NAG NAG . 
I 4 CL B 1 1102 2 CL CL . 
J 5 XSA B 1 1103 1 XSA 265 . 
K 6 SO4 B 1 1104 1 SO4 SO4 . 
L 7 HOH A 1 701 111 HOH HOH . 
L 7 HOH A 2 702 7 HOH HOH . 
L 7 HOH A 3 703 45 HOH HOH . 
L 7 HOH A 4 704 26 HOH HOH . 
L 7 HOH A 5 705 62 HOH HOH . 
L 7 HOH A 6 706 27 HOH HOH . 
L 7 HOH A 7 707 19 HOH HOH . 
L 7 HOH A 8 708 77 HOH HOH . 
L 7 HOH A 9 709 120 HOH HOH . 
L 7 HOH A 10 710 25 HOH HOH . 
L 7 HOH A 11 711 90 HOH HOH . 
L 7 HOH A 12 712 94 HOH HOH . 
L 7 HOH A 13 713 118 HOH HOH . 
L 7 HOH A 14 714 127 HOH HOH . 
L 7 HOH A 15 715 22 HOH HOH . 
L 7 HOH A 16 716 23 HOH HOH . 
L 7 HOH A 17 717 4 HOH HOH . 
L 7 HOH A 18 718 43 HOH HOH . 
L 7 HOH A 19 719 124 HOH HOH . 
L 7 HOH A 20 720 53 HOH HOH . 
L 7 HOH A 21 721 60 HOH HOH . 
L 7 HOH A 22 722 57 HOH HOH . 
L 7 HOH A 23 723 65 HOH HOH . 
L 7 HOH A 24 724 48 HOH HOH . 
L 7 HOH A 25 725 12 HOH HOH . 
L 7 HOH A 26 726 63 HOH HOH . 
L 7 HOH A 27 727 95 HOH HOH . 
L 7 HOH A 28 728 34 HOH HOH . 
L 7 HOH A 29 729 16 HOH HOH . 
L 7 HOH A 30 730 130 HOH HOH . 
L 7 HOH A 31 731 11 HOH HOH . 
L 7 HOH A 32 732 24 HOH HOH . 
L 7 HOH A 33 733 56 HOH HOH . 
L 7 HOH A 34 734 125 HOH HOH . 
L 7 HOH A 35 735 49 HOH HOH . 
L 7 HOH A 36 736 8 HOH HOH . 
L 7 HOH A 37 737 114 HOH HOH . 
L 7 HOH A 38 738 6 HOH HOH . 
L 7 HOH A 39 739 76 HOH HOH . 
L 7 HOH A 40 740 84 HOH HOH . 
L 7 HOH A 41 741 102 HOH HOH . 
L 7 HOH A 42 742 131 HOH HOH . 
L 7 HOH A 43 743 50 HOH HOH . 
L 7 HOH A 44 744 93 HOH HOH . 
L 7 HOH A 45 745 92 HOH HOH . 
L 7 HOH A 46 746 21 HOH HOH . 
L 7 HOH A 47 747 83 HOH HOH . 
L 7 HOH A 48 748 35 HOH HOH . 
L 7 HOH A 49 749 113 HOH HOH . 
L 7 HOH A 50 750 88 HOH HOH . 
L 7 HOH A 51 751 10 HOH HOH . 
L 7 HOH A 52 752 112 HOH HOH . 
L 7 HOH A 53 753 38 HOH HOH . 
L 7 HOH A 54 754 73 HOH HOH . 
L 7 HOH A 55 755 1 HOH HOH . 
L 7 HOH A 56 756 122 HOH HOH . 
L 7 HOH A 57 757 115 HOH HOH . 
L 7 HOH A 58 758 64 HOH HOH . 
L 7 HOH A 59 759 69 HOH HOH . 
L 7 HOH A 60 760 80 HOH HOH . 
L 7 HOH A 61 761 54 HOH HOH . 
L 7 HOH A 62 762 70 HOH HOH . 
L 7 HOH A 63 763 20 HOH HOH . 
L 7 HOH A 64 764 105 HOH HOH . 
L 7 HOH A 65 765 59 HOH HOH . 
M 7 HOH B 1 1201 134 HOH HOH . 
M 7 HOH B 2 1202 18 HOH HOH . 
M 7 HOH B 3 1203 55 HOH HOH . 
M 7 HOH B 4 1204 2 HOH HOH . 
M 7 HOH B 5 1205 5 HOH HOH . 
M 7 HOH B 6 1206 9 HOH HOH . 
M 7 HOH B 7 1207 52 HOH HOH . 
M 7 HOH B 8 1208 72 HOH HOH . 
M 7 HOH B 9 1209 132 HOH HOH . 
M 7 HOH B 10 1210 61 HOH HOH . 
M 7 HOH B 11 1211 3 HOH HOH . 
M 7 HOH B 12 1212 15 HOH HOH . 
M 7 HOH B 13 1213 96 HOH HOH . 
M 7 HOH B 14 1214 28 HOH HOH . 
M 7 HOH B 15 1215 110 HOH HOH . 
M 7 HOH B 16 1216 41 HOH HOH . 
M 7 HOH B 17 1217 31 HOH HOH . 
M 7 HOH B 18 1218 108 HOH HOH . 
M 7 HOH B 19 1219 44 HOH HOH . 
M 7 HOH B 20 1220 109 HOH HOH . 
M 7 HOH B 21 1221 40 HOH HOH . 
M 7 HOH B 22 1222 36 HOH HOH . 
M 7 HOH B 23 1223 14 HOH HOH . 
M 7 HOH B 24 1224 42 HOH HOH . 
M 7 HOH B 25 1225 46 HOH HOH . 
M 7 HOH B 26 1226 39 HOH HOH . 
M 7 HOH B 27 1227 97 HOH HOH . 
M 7 HOH B 28 1228 66 HOH HOH . 
M 7 HOH B 29 1229 51 HOH HOH . 
M 7 HOH B 30 1230 37 HOH HOH . 
M 7 HOH B 31 1231 133 HOH HOH . 
M 7 HOH B 32 1232 13 HOH HOH . 
M 7 HOH B 33 1233 116 HOH HOH . 
M 7 HOH B 34 1234 74 HOH HOH . 
M 7 HOH B 35 1235 32 HOH HOH . 
M 7 HOH B 36 1236 81 HOH HOH . 
M 7 HOH B 37 1237 58 HOH HOH . 
M 7 HOH B 38 1238 86 HOH HOH . 
M 7 HOH B 39 1239 17 HOH HOH . 
M 7 HOH B 40 1240 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 -26.721 -2.556 -25.913 1 81.92 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . C 3 -26.786 -3.757 -26.869 1 86.33 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . C 3 -27.776 -3.604 -28.04 1 88.24 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . C 3 -29.06 -2.854 -27.68 1 86.85 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . C 3 -28.732 -1.618 -26.84 1 86.98 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . C 3 -30.003 -0.878 -26.438 1 88.67 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . C 3 -25.022 -5.175 -27.799 1 88.78 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . C 3 -23.622 -5.234 -28.338 1 90.28 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . C 3 -25.456 -3.98 -27.409 1 87.74 ? N2 NAG 601 A 1 
HETATM 10 O O3 NAG . . . C 3 -28.114 -4.881 -28.547 1 91.06 ? O3 NAG 601 A 1 
HETATM 11 O O4 NAG . . . C 3 -29.765 -2.501 -28.856 1 79.04 ? O4 NAG 601 A 1 
HETATM 12 O O5 NAG . . . C 3 -28.008 -2.002 -25.677 1 84.99 ? O5 NAG 601 A 1 
HETATM 13 O O6 NAG . . . C 3 -29.666 0.297 -25.738 1 91.99 ? O6 NAG 601 A 1 
HETATM 14 O O7 NAG . . . C 3 -25.713 -6.191 -27.738 1 88.98 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           14 
#