data_7LBR # _model_server_result.job_id mh5R7KYk0wJ49iiHHknSZg _model_server_result.datetime_utc '2024-11-08 13:26:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":404}' # _entry.id 7LBR # _exptl.entry_id 7LBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 504.687 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(azetidin-3-yl)amino]-N-[(1R)-1-{3-[5-({[(1S,3R)-3-hydroxycyclopentyl]amino}methyl)thiophen-2-yl]phenyl}ethyl]-2-methylbenzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.64 _cell.angle_gamma 90 _cell.entry_id 7LBR _cell.length_a 46.756 _cell.length_b 145.871 _cell.length_c 60.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 190 A CYS 189 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc2 A SG CYS 193 A CYS 192 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc3 A SG CYS 225 A CYS 224 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc4 A SG CYS 227 A CYS 226 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc5 B SG CYS 190 B CYS 189 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc6 B SG CYS 193 B CYS 192 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc7 B SG CYS 225 B CYS 224 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc8 B SG CYS 227 B CYS 226 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula 'C29 H36 N4 O2 S' _chem_comp.formula_weight 504.687 _chem_comp.id XT7 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(azetidin-3-yl)amino]-N-[(1R)-1-{3-[5-({[(1S,3R)-3-hydroxycyclopentyl]amino}methyl)thiophen-2-yl]phenyl}ethyl]-2-methylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 XT7 sing 393 n n C02 N03 XT7 sing 394 n n C02 C18 XT7 sing 395 n n N03 C04 XT7 sing 396 n n C19 C18 XT7 doub 397 n y C19 C20 XT7 sing 398 n y C18 C36 XT7 sing 399 n y C31 C30 XT7 sing 400 n n C31 C32 XT7 sing 401 n n C07 C06 XT7 sing 402 n n C20 C21 XT7 doub 403 n y C04 C05 XT7 sing 404 n n C04 O17 XT7 doub 405 n n O33 C32 XT7 sing 406 n n C30 C29 XT7 sing 407 n n N14 C13 XT7 sing 408 n n N14 C15 XT7 sing 409 n n C36 C22 XT7 doub 410 n y C06 C05 XT7 doub 411 n y C06 C08 XT7 sing 412 n y C32 C34 XT7 sing 413 n n C05 C16 XT7 sing 414 n y C13 C12 XT7 sing 415 n n C08 C09 XT7 doub 416 n y C21 C22 XT7 sing 417 n y C16 C10 XT7 doub 418 n y C22 C23 XT7 sing 419 n n C09 C10 XT7 sing 420 n y C10 N11 XT7 sing 421 n n C15 C12 XT7 sing 422 n n C29 C34 XT7 sing 423 n n C29 N28 XT7 sing 424 n n N11 C12 XT7 sing 425 n n S35 C23 XT7 sing 426 n y S35 C26 XT7 sing 427 n y C23 C24 XT7 doub 428 n y N28 C27 XT7 sing 429 n n C24 C25 XT7 sing 430 n y C26 C27 XT7 sing 431 n n C26 C25 XT7 doub 432 n y C01 H1 XT7 sing 433 n n C01 H2 XT7 sing 434 n n C01 H3 XT7 sing 435 n n C02 H4 XT7 sing 436 n n N03 H5 XT7 sing 437 n n C07 H6 XT7 sing 438 n n C07 H7 XT7 sing 439 n n C07 H8 XT7 sing 440 n n C08 H9 XT7 sing 441 n n C09 H10 XT7 sing 442 n n N11 H11 XT7 sing 443 n n C12 H12 XT7 sing 444 n n C13 H13 XT7 sing 445 n n C13 H14 XT7 sing 446 n n N14 H15 XT7 sing 447 n n C15 H17 XT7 sing 448 n n C15 H18 XT7 sing 449 n n C16 H19 XT7 sing 450 n n C19 H20 XT7 sing 451 n n C20 H21 XT7 sing 452 n n C21 H22 XT7 sing 453 n n C24 H23 XT7 sing 454 n n C25 H24 XT7 sing 455 n n C27 H25 XT7 sing 456 n n C27 H26 XT7 sing 457 n n N28 H27 XT7 sing 458 n n C29 H29 XT7 sing 459 n n C30 H30 XT7 sing 460 n n C30 H31 XT7 sing 461 n n C31 H32 XT7 sing 462 n n C31 H33 XT7 sing 463 n n C32 H34 XT7 sing 464 n n O33 H35 XT7 sing 465 n n C34 H36 XT7 sing 466 n n C34 H37 XT7 sing 467 n n C36 H38 XT7 sing 468 n n # _atom_sites.entry_id 7LBR _atom_sites.fract_transf_matrix[1][1] 0.021388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003632 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 402 ZN ZN . D 3 SO4 A 1 402 501 SO4 SO4 . E 3 SO4 A 1 403 1501 SO4 SO4 . F 4 XT7 A 1 404 1701 XT7 X89 . G 5 GOL A 1 405 1801 GOL GOL . H 2 ZN B 1 401 402 ZN ZN . I 3 SO4 B 1 402 404 SO4 SO4 . J 3 SO4 B 1 403 901 SO4 SO4 . K 4 XT7 B 1 404 1201 XT7 X89 . L 5 GOL B 1 405 1301 GOL GOL . M 6 HOH A 1 501 28 HOH HOH . M 6 HOH A 2 502 15 HOH HOH . M 6 HOH A 3 503 51 HOH HOH . M 6 HOH A 4 504 103 HOH HOH . M 6 HOH A 5 505 11 HOH HOH . M 6 HOH A 6 506 27 HOH HOH . M 6 HOH A 7 507 95 HOH HOH . M 6 HOH A 8 508 65 HOH HOH . M 6 HOH A 9 509 42 HOH HOH . M 6 HOH A 10 510 70 HOH HOH . M 6 HOH A 11 511 54 HOH HOH . M 6 HOH A 12 512 36 HOH HOH . M 6 HOH A 13 513 9 HOH HOH . M 6 HOH A 14 514 88 HOH HOH . M 6 HOH A 15 515 62 HOH HOH . M 6 HOH A 16 516 6 HOH HOH . M 6 HOH A 17 517 80 HOH HOH . M 6 HOH A 18 518 72 HOH HOH . M 6 HOH A 19 519 55 HOH HOH . M 6 HOH A 20 520 86 HOH HOH . M 6 HOH A 21 521 18 HOH HOH . M 6 HOH A 22 522 71 HOH HOH . M 6 HOH A 23 523 61 HOH HOH . M 6 HOH A 24 524 99 HOH HOH . M 6 HOH A 25 525 8 HOH HOH . M 6 HOH A 26 526 13 HOH HOH . M 6 HOH A 27 527 34 HOH HOH . M 6 HOH A 28 528 53 HOH HOH . M 6 HOH A 29 529 2 HOH HOH . M 6 HOH A 30 530 97 HOH HOH . M 6 HOH A 31 531 12 HOH HOH . M 6 HOH A 32 532 98 HOH HOH . M 6 HOH A 33 533 89 HOH HOH . M 6 HOH A 34 534 1 HOH HOH . M 6 HOH A 35 535 45 HOH HOH . M 6 HOH A 36 536 46 HOH HOH . M 6 HOH A 37 537 20 HOH HOH . M 6 HOH A 38 538 44 HOH HOH . M 6 HOH A 39 539 41 HOH HOH . M 6 HOH A 40 540 40 HOH HOH . M 6 HOH A 41 541 108 HOH HOH . M 6 HOH A 42 542 39 HOH HOH . M 6 HOH A 43 543 22 HOH HOH . M 6 HOH A 44 544 25 HOH HOH . M 6 HOH A 45 545 75 HOH HOH . M 6 HOH A 46 546 107 HOH HOH . M 6 HOH A 47 547 64 HOH HOH . M 6 HOH A 48 548 24 HOH HOH . M 6 HOH A 49 549 58 HOH HOH . M 6 HOH A 50 550 94 HOH HOH . M 6 HOH A 51 551 43 HOH HOH . N 6 HOH B 1 501 48 HOH HOH . N 6 HOH B 2 502 105 HOH HOH . N 6 HOH B 3 503 87 HOH HOH . N 6 HOH B 4 504 60 HOH HOH . N 6 HOH B 5 505 102 HOH HOH . N 6 HOH B 6 506 33 HOH HOH . N 6 HOH B 7 507 50 HOH HOH . N 6 HOH B 8 508 14 HOH HOH . N 6 HOH B 9 509 78 HOH HOH . N 6 HOH B 10 510 77 HOH HOH . N 6 HOH B 11 511 26 HOH HOH . N 6 HOH B 12 512 73 HOH HOH . N 6 HOH B 13 513 93 HOH HOH . N 6 HOH B 14 514 35 HOH HOH . N 6 HOH B 15 515 10 HOH HOH . N 6 HOH B 16 516 59 HOH HOH . N 6 HOH B 17 517 101 HOH HOH . N 6 HOH B 18 518 96 HOH HOH . N 6 HOH B 19 519 17 HOH HOH . N 6 HOH B 20 520 47 HOH HOH . N 6 HOH B 21 521 100 HOH HOH . N 6 HOH B 22 522 21 HOH HOH . N 6 HOH B 23 523 23 HOH HOH . N 6 HOH B 24 524 7 HOH HOH . N 6 HOH B 25 525 49 HOH HOH . N 6 HOH B 26 526 31 HOH HOH . N 6 HOH B 27 527 92 HOH HOH . N 6 HOH B 28 528 29 HOH HOH . N 6 HOH B 29 529 106 HOH HOH . N 6 HOH B 30 530 19 HOH HOH . N 6 HOH B 31 531 66 HOH HOH . N 6 HOH B 32 532 57 HOH HOH . N 6 HOH B 33 533 85 HOH HOH . N 6 HOH B 34 534 4 HOH HOH . N 6 HOH B 35 535 74 HOH HOH . N 6 HOH B 36 536 69 HOH HOH . N 6 HOH B 37 537 32 HOH HOH . N 6 HOH B 38 538 56 HOH HOH . N 6 HOH B 39 539 81 HOH HOH . N 6 HOH B 40 540 52 HOH HOH . N 6 HOH B 41 541 76 HOH HOH . N 6 HOH B 42 542 104 HOH HOH . N 6 HOH B 43 543 5 HOH HOH . N 6 HOH B 44 544 3 HOH HOH . N 6 HOH B 45 545 37 HOH HOH . N 6 HOH B 46 546 82 HOH HOH . N 6 HOH B 47 547 79 HOH HOH . N 6 HOH B 48 548 16 HOH HOH . N 6 HOH B 49 549 83 HOH HOH . N 6 HOH B 50 550 91 HOH HOH . N 6 HOH B 51 551 90 HOH HOH . N 6 HOH B 52 552 67 HOH HOH . N 6 HOH B 53 553 109 HOH HOH . N 6 HOH B 54 554 38 HOH HOH . N 6 HOH B 55 555 30 HOH HOH . N 6 HOH B 56 556 84 HOH HOH . N 6 HOH B 57 557 68 HOH HOH . N 6 HOH B 58 558 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 XT7 . . . K 4 6.707 -68.271 -0.028 1 36.06 ? C01 XT7 404 B 1 HETATM 2 C C02 XT7 . . . K 4 7.05 -68.104 -1.533 1 36.31 ? C02 XT7 404 B 1 HETATM 3 N N03 XT7 . . . K 4 7.521 -66.749 -1.78 1 35.05 ? N03 XT7 404 B 1 HETATM 4 C C04 XT7 . . . K 4 7.64 -66.117 -2.983 1 35.07 ? C04 XT7 404 B 1 HETATM 5 C C05 XT7 . . . K 4 8.163 -64.729 -3.193 1 33.44 ? C05 XT7 404 B 1 HETATM 6 C C06 XT7 . . . K 4 7.304 -63.678 -3.39 1 32.16 ? C06 XT7 404 B 1 HETATM 7 C C07 XT7 . . . K 4 5.843 -63.878 -3.367 1 33.17 ? C07 XT7 404 B 1 HETATM 8 C C08 XT7 . . . K 4 7.857 -62.429 -3.595 1 35.04 ? C08 XT7 404 B 1 HETATM 9 C C09 XT7 . . . K 4 9.219 -62.185 -3.628 1 34.95 ? C09 XT7 404 B 1 HETATM 10 C C10 XT7 . . . K 4 10.117 -63.189 -3.444 1 37.15 ? C10 XT7 404 B 1 HETATM 11 N N11 XT7 . . . K 4 11.513 -62.965 -3.474 1 48.47 ? N11 XT7 404 B 1 HETATM 12 C C12 XT7 . . . K 4 12.253 -61.765 -3.759 1 53.72 ? C12 XT7 404 B 1 HETATM 13 C C13 XT7 . . . K 4 13.762 -61.788 -3.222 1 57.52 ? C13 XT7 404 B 1 HETATM 14 N N14 XT7 . . . K 4 13.338 -60.839 -2.283 1 59.83 ? N14 XT7 404 B 1 HETATM 15 C C15 XT7 . . . K 4 12.06 -60.456 -2.861 1 56.25 ? C15 XT7 404 B 1 HETATM 16 C C16 XT7 . . . K 4 9.532 -64.447 -3.23 1 34.91 ? C16 XT7 404 B 1 HETATM 17 O O17 XT7 . . . K 4 7.267 -66.741 -3.97 1 37.37 ? O17 XT7 404 B 1 HETATM 18 C C18 XT7 . . . K 4 8.048 -69.134 -2.057 1 36.59 ? C18 XT7 404 B 1 HETATM 19 C C19 XT7 . . . K 4 9.338 -69.176 -1.535 1 38.83 ? C19 XT7 404 B 1 HETATM 20 C C20 XT7 . . . K 4 10.256 -70.101 -2.024 1 39.97 ? C20 XT7 404 B 1 HETATM 21 C C21 XT7 . . . K 4 9.93 -70.984 -3.02 1 38.65 ? C21 XT7 404 B 1 HETATM 22 C C22 XT7 . . . K 4 8.659 -70.998 -3.606 1 41.63 ? C22 XT7 404 B 1 HETATM 23 C C23 XT7 . . . K 4 8.315 -71.916 -4.682 1 46.75 ? C23 XT7 404 B 1 HETATM 24 C C24 XT7 . . . K 4 8.993 -72.646 -5.568 1 50.49 ? C24 XT7 404 B 1 HETATM 25 C C25 XT7 . . . K 4 8.216 -73.436 -6.504 1 59.42 ? C25 XT7 404 B 1 HETATM 26 C C26 XT7 . . . K 4 6.881 -73.351 -6.38 1 65.12 ? C26 XT7 404 B 1 HETATM 27 C C27 XT7 . . . K 4 5.664 -73.997 -7.092 1 77.8 ? C27 XT7 404 B 1 HETATM 28 N N28 XT7 . . . K 4 5.226 -75.332 -6.47 1 95.02 ? N28 XT7 404 B 1 HETATM 29 C C29 XT7 . . . K 4 4.399 -75.528 -5.204 1 112.51 ? C29 XT7 404 B 1 HETATM 30 C C30 XT7 . . . K 4 2.894 -75.734 -5.584 1 119.69 ? C30 XT7 404 B 1 HETATM 31 C C31 XT7 . . . K 4 2.312 -76.708 -4.571 1 121.76 ? C31 XT7 404 B 1 HETATM 32 C C32 XT7 . . . K 4 3.43 -77.607 -3.978 1 120.73 ? C32 XT7 404 B 1 HETATM 33 O O33 XT7 . . . K 4 3.486 -78.866 -4.542 1 120.78 ? O33 XT7 404 B 1 HETATM 34 C C34 XT7 . . . K 4 4.755 -76.834 -4.368 1 116.08 ? C34 XT7 404 B 1 HETATM 35 S S35 XT7 . . . K 4 6.605 -72.207 -5.026 1 53.39 ? S35 XT7 404 B 1 HETATM 36 C C36 XT7 . . . K 4 7.767 -70.045 -3.077 1 37.75 ? C36 XT7 404 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #