data_7LBS # _model_server_result.job_id CrZF2PAT3gZy9brC838Wvg _model_server_result.datetime_utc '2024-11-21 08:48:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lbs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7LBS # _exptl.entry_id 7LBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.661 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(azetidin-3-yl)amino]-2-methyl-N-[(1R)-1-(3-{5-[(pyrrolidin-1-yl)methyl]thiophen-2-yl}phenyl)ethyl]benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.78 _cell.angle_gamma 90 _cell.entry_id 7LBS _cell.length_a 46.6 _cell.length_b 145.94 _cell.length_c 60.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,Q 1 1 B,J,K,L,M,N,O,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 190 A CYS 189 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc2 A SG CYS 193 A CYS 192 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc3 A SG CYS 225 A CYS 224 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc4 A SG CYS 227 A CYS 226 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc5 B SG CYS 190 B CYS 189 1_555 K ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc6 B SG CYS 193 B CYS 192 1_555 K ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc7 B SG CYS 225 B CYS 224 1_555 K ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? # _chem_comp.formula 'C28 H34 N4 O S' _chem_comp.formula_weight 474.661 _chem_comp.id XR8 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(azetidin-3-yl)amino]-2-methyl-N-[(1R)-1-(3-{5-[(pyrrolidin-1-yl)methyl]thiophen-2-yl}phenyl)ethyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 XR8 sing 399 n n N14 C13 XR8 sing 400 n n N14 C15 XR8 sing 401 n n C34 C33 XR8 doub 402 n y C34 C18 XR8 sing 403 n y C02 N03 XR8 sing 404 n n C02 C18 XR8 sing 405 n n C13 C12 XR8 sing 406 n n N03 C04 XR8 sing 407 n n C33 C32 XR8 sing 408 n y C18 C19 XR8 doub 409 n y C15 C12 XR8 sing 410 n n C32 C20 XR8 doub 411 n y C04 C05 XR8 sing 412 n n C04 O17 XR8 doub 413 n n C12 N11 XR8 sing 414 n n C19 C20 XR8 sing 415 n y C05 C16 XR8 doub 416 n y C05 C06 XR8 sing 417 n y C07 C06 XR8 sing 418 n n C16 C10 XR8 sing 419 n y C06 C08 XR8 doub 420 n y C10 C09 XR8 doub 421 n y C10 N11 XR8 sing 422 n n C08 C09 XR8 sing 423 n y C20 C21 XR8 sing 424 n n C28 C27 XR8 sing 425 n n C28 C29 XR8 sing 426 n n C21 S31 XR8 sing 427 n y C21 C22 XR8 doub 428 n y C27 N26 XR8 sing 429 n n S31 C24 XR8 sing 430 n y C29 C30 XR8 sing 431 n n C22 C23 XR8 sing 432 n y N26 C30 XR8 sing 433 n n N26 C25 XR8 sing 434 n n C24 C23 XR8 doub 435 n y C24 C25 XR8 sing 436 n n C01 H1 XR8 sing 437 n n C01 H2 XR8 sing 438 n n C01 H3 XR8 sing 439 n n C02 H4 XR8 sing 440 n n N03 H5 XR8 sing 441 n n C07 H6 XR8 sing 442 n n C07 H7 XR8 sing 443 n n C07 H8 XR8 sing 444 n n C08 H9 XR8 sing 445 n n C09 H10 XR8 sing 446 n n N11 H11 XR8 sing 447 n n C12 H12 XR8 sing 448 n n C13 H13 XR8 sing 449 n n C13 H14 XR8 sing 450 n n N14 H15 XR8 sing 451 n n C15 H17 XR8 sing 452 n n C15 H18 XR8 sing 453 n n C16 H19 XR8 sing 454 n n C19 H20 XR8 sing 455 n n C22 H21 XR8 sing 456 n n C23 H22 XR8 sing 457 n n C25 H23 XR8 sing 458 n n C25 H24 XR8 sing 459 n n C27 H26 XR8 sing 460 n n C27 H27 XR8 sing 461 n n C28 H28 XR8 sing 462 n n C28 H29 XR8 sing 463 n n C29 H30 XR8 sing 464 n n C29 H31 XR8 sing 465 n n C30 H32 XR8 sing 466 n n C30 H33 XR8 sing 467 n n C32 H34 XR8 sing 468 n n C33 H35 XR8 sing 469 n n C34 H36 XR8 sing 470 n n # _atom_sites.entry_id 7LBS _atom_sites.fract_transf_matrix[1][1] 0.021459 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0037 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XR8 A 1 401 401 XR8 XR8 . D 3 ZN A 1 402 402 ZN ZN . E 4 SO4 A 1 403 501 SO4 SO4 . F 5 BO3 A 1 404 601 BO3 BO3 . G 5 BO3 A 1 405 701 BO3 BO3 . H 4 SO4 A 1 406 1001 SO4 SO4 . I 5 BO3 A 1 407 1201 BO3 BO3 . J 2 XR8 B 1 401 401 XR8 XR8 . K 3 ZN B 1 402 402 ZN ZN . L 4 SO4 B 1 403 404 SO4 SO4 . M 6 GOL B 1 404 501 GOL GOL . N 6 GOL B 1 405 701 GOL GOL . O 5 BO3 B 1 406 801 BO3 BO3 . P 4 SO4 B 1 407 901 SO4 SO4 . Q 7 HOH A 1 501 11 HOH HOH . Q 7 HOH A 2 502 8 HOH HOH . Q 7 HOH A 3 503 7 HOH HOH . Q 7 HOH A 4 504 1 HOH HOH . Q 7 HOH A 5 505 5 HOH HOH . Q 7 HOH A 6 506 12 HOH HOH . Q 7 HOH A 7 507 10 HOH HOH . Q 7 HOH A 8 508 9 HOH HOH . Q 7 HOH A 9 509 15 HOH HOH . Q 7 HOH A 10 510 13 HOH HOH . Q 7 HOH A 11 511 16 HOH HOH . Q 7 HOH A 12 512 14 HOH HOH . R 7 HOH B 1 501 3 HOH HOH . R 7 HOH B 2 502 4 HOH HOH . R 7 HOH B 3 503 6 HOH HOH . R 7 HOH B 4 504 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 XR8 . . . C 2 11.788 -12.142 29.673 1 22.64 ? C01 XR8 401 A 1 HETATM 2 C C02 XR8 . . . C 2 11.3 -11.895 31.097 1 22.9 ? C02 XR8 401 A 1 HETATM 3 N N03 XR8 . . . C 2 10.718 -10.561 31.235 1 21.35 ? N03 XR8 401 A 1 HETATM 4 C C04 XR8 . . . C 2 10.52 -9.896 32.566 1 19.22 ? C04 XR8 401 A 1 HETATM 5 C C05 XR8 . . . C 2 9.912 -8.42 32.751 1 19.02 ? C05 XR8 401 A 1 HETATM 6 C C06 XR8 . . . C 2 10.901 -7.428 32.879 1 18.11 ? C06 XR8 401 A 1 HETATM 7 C C07 XR8 . . . C 2 12.419 -7.789 32.79 1 18.26 ? C07 XR8 401 A 1 HETATM 8 C C08 XR8 . . . C 2 10.577 -6.136 33.072 1 18.57 ? C08 XR8 401 A 1 HETATM 9 C C09 XR8 . . . C 2 9.279 -5.754 33.148 1 19.46 ? C09 XR8 401 A 1 HETATM 10 C C10 XR8 . . . C 2 8.235 -6.675 33.02 1 20.07 ? C10 XR8 401 A 1 HETATM 11 N N11 XR8 . . . C 2 6.879 -6.006 33.18 1 21.35 ? N11 XR8 401 A 1 HETATM 12 C C12 XR8 . . . C 2 5.615 -6.347 32.588 1 22.57 ? C12 XR8 401 A 1 HETATM 13 C C13 XR8 . . . C 2 5.601 -6.68 31.155 1 23.26 ? C13 XR8 401 A 1 HETATM 14 N N14 XR8 . . . C 2 4.962 -5.362 30.939 1 23.64 ? N14 XR8 401 A 1 HETATM 15 C C15 XR8 . . . C 2 4.844 -5.092 32.369 1 22.38 ? C15 XR8 401 A 1 HETATM 16 C C16 XR8 . . . C 2 8.565 -8.03 32.832 1 19.69 ? C16 XR8 401 A 1 HETATM 17 O O17 XR8 . . . C 2 10.924 -10.45 33.553 1 17.25 ? O17 XR8 401 A 1 HETATM 18 C C18 XR8 . . . C 2 10.209 -12.895 31.572 1 24.83 ? C18 XR8 401 A 1 HETATM 19 C C19 XR8 . . . C 2 10.521 -13.798 32.594 1 26.64 ? C19 XR8 401 A 1 HETATM 20 C C20 XR8 . . . C 2 9.539 -14.622 33.098 1 29.79 ? C20 XR8 401 A 1 HETATM 21 C C21 XR8 . . . C 2 9.86 -15.647 34.218 1 34.66 ? C21 XR8 401 A 1 HETATM 22 C C22 XR8 . . . C 2 8.992 -16.255 35.177 1 37.12 ? C22 XR8 401 A 1 HETATM 23 C C23 XR8 . . . C 2 9.808 -17.264 36.049 1 42.1 ? C23 XR8 401 A 1 HETATM 24 C C24 XR8 . . . C 2 11.181 -17.28 35.626 1 46.93 ? C24 XR8 401 A 1 HETATM 25 C C25 XR8 . . . C 2 12.362 -18.168 36.16 1 54.6 ? C25 XR8 401 A 1 HETATM 26 N N26 XR8 . . . C 2 12.629 -18.992 35.3 1 60.08 ? N26 XR8 401 A 1 HETATM 27 C C27 XR8 . . . C 2 13.8 -18.625 34.254 1 59.41 ? C27 XR8 401 A 1 HETATM 28 C C28 XR8 . . . C 2 14.32 -19.756 33.781 1 58.98 ? C28 XR8 401 A 1 HETATM 29 C C29 XR8 . . . C 2 13.702 -20.875 34.541 1 60.62 ? C29 XR8 401 A 1 HETATM 30 C C30 XR8 . . . C 2 12.84 -20.211 35.672 1 62.12 ? C30 XR8 401 A 1 HETATM 31 S S31 XR8 . . . C 2 11.381 -16.195 34.404 1 41.47 ? S31 XR8 401 A 1 HETATM 32 C C32 XR8 . . . C 2 8.255 -14.614 32.522 1 28.18 ? C32 XR8 401 A 1 HETATM 33 C C33 XR8 . . . C 2 7.943 -13.704 31.516 1 27.27 ? C33 XR8 401 A 1 HETATM 34 C C34 XR8 . . . C 2 8.915 -12.84 31.037 1 25.85 ? C34 XR8 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #