data_7LBS
#
_model_server_result.job_id            -kKoIbLLEeQtWZ2_DqWlUw 
_model_server_result.datetime_utc      '2024-11-21 11:21:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lbs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":401}' 
#
_entry.id    7LBS 
#
_exptl.entry_id    7LBS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              474.661 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[(azetidin-3-yl)amino]-2-methyl-N-[(1R)-1-(3-{5-[(pyrrolidin-1-yl)methyl]thiophen-2-yl}phenyl)ethyl]benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.78 
_cell.angle_gamma         90 
_cell.entry_id            7LBS 
_cell.length_a            46.6 
_cell.length_b            145.94 
_cell.length_c            60.05 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LBS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,Q 1 1 
B,J,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 190 A CYS 189 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc2 A SG CYS 193 A CYS 192 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc3 A SG CYS 225 A CYS 224 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc4 A SG CYS 227 A CYS 226 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc5 B SG CYS 190 B CYS 189 1_555 K ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc6 B SG CYS 193 B CYS 192 1_555 K ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc7 B SG CYS 225 B CYS 224 1_555 K ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
#
_chem_comp.formula           'C28 H34 N4 O S' 
_chem_comp.formula_weight    474.661 
_chem_comp.id                XR8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[(azetidin-3-yl)amino]-2-methyl-N-[(1R)-1-(3-{5-[(pyrrolidin-1-yl)methyl]thiophen-2-yl}phenyl)ethyl]benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 XR8 sing 399 n n 
N14 C13 XR8 sing 400 n n 
N14 C15 XR8 sing 401 n n 
C34 C33 XR8 doub 402 n y 
C34 C18 XR8 sing 403 n y 
C02 N03 XR8 sing 404 n n 
C02 C18 XR8 sing 405 n n 
C13 C12 XR8 sing 406 n n 
N03 C04 XR8 sing 407 n n 
C33 C32 XR8 sing 408 n y 
C18 C19 XR8 doub 409 n y 
C15 C12 XR8 sing 410 n n 
C32 C20 XR8 doub 411 n y 
C04 C05 XR8 sing 412 n n 
C04 O17 XR8 doub 413 n n 
C12 N11 XR8 sing 414 n n 
C19 C20 XR8 sing 415 n y 
C05 C16 XR8 doub 416 n y 
C05 C06 XR8 sing 417 n y 
C07 C06 XR8 sing 418 n n 
C16 C10 XR8 sing 419 n y 
C06 C08 XR8 doub 420 n y 
C10 C09 XR8 doub 421 n y 
C10 N11 XR8 sing 422 n n 
C08 C09 XR8 sing 423 n y 
C20 C21 XR8 sing 424 n n 
C28 C27 XR8 sing 425 n n 
C28 C29 XR8 sing 426 n n 
C21 S31 XR8 sing 427 n y 
C21 C22 XR8 doub 428 n y 
C27 N26 XR8 sing 429 n n 
S31 C24 XR8 sing 430 n y 
C29 C30 XR8 sing 431 n n 
C22 C23 XR8 sing 432 n y 
N26 C30 XR8 sing 433 n n 
N26 C25 XR8 sing 434 n n 
C24 C23 XR8 doub 435 n y 
C24 C25 XR8 sing 436 n n 
C01 H1 XR8 sing 437 n n 
C01 H2 XR8 sing 438 n n 
C01 H3 XR8 sing 439 n n 
C02 H4 XR8 sing 440 n n 
N03 H5 XR8 sing 441 n n 
C07 H6 XR8 sing 442 n n 
C07 H7 XR8 sing 443 n n 
C07 H8 XR8 sing 444 n n 
C08 H9 XR8 sing 445 n n 
C09 H10 XR8 sing 446 n n 
N11 H11 XR8 sing 447 n n 
C12 H12 XR8 sing 448 n n 
C13 H13 XR8 sing 449 n n 
C13 H14 XR8 sing 450 n n 
N14 H15 XR8 sing 451 n n 
C15 H17 XR8 sing 452 n n 
C15 H18 XR8 sing 453 n n 
C16 H19 XR8 sing 454 n n 
C19 H20 XR8 sing 455 n n 
C22 H21 XR8 sing 456 n n 
C23 H22 XR8 sing 457 n n 
C25 H23 XR8 sing 458 n n 
C25 H24 XR8 sing 459 n n 
C27 H26 XR8 sing 460 n n 
C27 H27 XR8 sing 461 n n 
C28 H28 XR8 sing 462 n n 
C28 H29 XR8 sing 463 n n 
C29 H30 XR8 sing 464 n n 
C29 H31 XR8 sing 465 n n 
C30 H32 XR8 sing 466 n n 
C30 H33 XR8 sing 467 n n 
C32 H34 XR8 sing 468 n n 
C33 H35 XR8 sing 469 n n 
C34 H36 XR8 sing 470 n n 
#
_atom_sites.entry_id                     7LBS 
_atom_sites.fract_transf_matrix[1][1]    0.021459 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0037 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006852 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016899 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XR8 A 1 401 401 XR8 XR8 . 
D 3 ZN A 1 402 402 ZN ZN . 
E 4 SO4 A 1 403 501 SO4 SO4 . 
F 5 BO3 A 1 404 601 BO3 BO3 . 
G 5 BO3 A 1 405 701 BO3 BO3 . 
H 4 SO4 A 1 406 1001 SO4 SO4 . 
I 5 BO3 A 1 407 1201 BO3 BO3 . 
J 2 XR8 B 1 401 401 XR8 XR8 . 
K 3 ZN B 1 402 402 ZN ZN . 
L 4 SO4 B 1 403 404 SO4 SO4 . 
M 6 GOL B 1 404 501 GOL GOL . 
N 6 GOL B 1 405 701 GOL GOL . 
O 5 BO3 B 1 406 801 BO3 BO3 . 
P 4 SO4 B 1 407 901 SO4 SO4 . 
Q 7 HOH A 1 501 11 HOH HOH . 
Q 7 HOH A 2 502 8 HOH HOH . 
Q 7 HOH A 3 503 7 HOH HOH . 
Q 7 HOH A 4 504 1 HOH HOH . 
Q 7 HOH A 5 505 5 HOH HOH . 
Q 7 HOH A 6 506 12 HOH HOH . 
Q 7 HOH A 7 507 10 HOH HOH . 
Q 7 HOH A 8 508 9 HOH HOH . 
Q 7 HOH A 9 509 15 HOH HOH . 
Q 7 HOH A 10 510 13 HOH HOH . 
Q 7 HOH A 11 511 16 HOH HOH . 
Q 7 HOH A 12 512 14 HOH HOH . 
R 7 HOH B 1 501 3 HOH HOH . 
R 7 HOH B 2 502 4 HOH HOH . 
R 7 HOH B 3 503 6 HOH HOH . 
R 7 HOH B 4 504 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 XR8 . . . J 2 16.38 68.062 -2.448 1 19.37 ? C01 XR8 401 B 1 
HETATM 2 C C02 XR8 . . . J 2 16.521 67.783 -3.926 1 19.69 ? C02 XR8 401 B 1 
HETATM 3 N N03 XR8 . . . J 2 16.135 66.41 -4.202 1 19.1 ? N03 XR8 401 B 1 
HETATM 4 C C04 XR8 . . . J 2 16.397 65.805 -5.538 1 17.42 ? C04 XR8 401 B 1 
HETATM 5 C C05 XR8 . . . J 2 16.02 64.306 -5.876 1 17.36 ? C05 XR8 401 B 1 
HETATM 6 C C06 XR8 . . . J 2 17.079 63.409 -5.68 1 17.3 ? C06 XR8 401 B 1 
HETATM 7 C C07 XR8 . . . J 2 18.479 63.922 -5.173 1 17.81 ? C07 XR8 401 B 1 
HETATM 8 C C08 XR8 . . . J 2 16.938 62.086 -5.92 1 17.61 ? C08 XR8 401 B 1 
HETATM 9 C C09 XR8 . . . J 2 15.745 61.603 -6.337 1 18.52 ? C09 XR8 401 B 1 
HETATM 10 C C10 XR8 . . . J 2 14.651 62.457 -6.553 1 19 ? C10 XR8 401 B 1 
HETATM 11 N N11 XR8 . . . J 2 13.417 61.713 -7.035 1 20.25 ? N11 XR8 401 B 1 
HETATM 12 C C12 XR8 . . . J 2 12.133 62.303 -7.261 1 21.82 ? C12 XR8 401 B 1 
HETATM 13 C C13 XR8 . . . J 2 11.108 61.242 -7.269 1 22.52 ? C13 XR8 401 B 1 
HETATM 14 N N14 XR8 . . . J 2 10.892 61.631 -5.869 1 23.32 ? N14 XR8 401 B 1 
HETATM 15 C C15 XR8 . . . J 2 11.534 62.929 -6.058 1 22.62 ? C15 XR8 401 B 1 
HETATM 16 C C16 XR8 . . . J 2 14.802 63.833 -6.322 1 18.23 ? C16 XR8 401 B 1 
HETATM 17 O O17 XR8 . . . J 2 16.986 66.457 -6.324 1 16.12 ? O17 XR8 401 B 1 
HETATM 18 C C18 XR8 . . . J 2 15.637 68.766 -4.76 1 20.66 ? C18 XR8 401 B 1 
HETATM 19 C C19 XR8 . . . J 2 16.279 69.699 -5.564 1 21.58 ? C19 XR8 401 B 1 
HETATM 20 C C20 XR8 . . . J 2 15.54 70.552 -6.368 1 23.63 ? C20 XR8 401 B 1 
HETATM 21 C C21 XR8 . . . J 2 16.297 71.6 -7.258 1 26.55 ? C21 XR8 401 B 1 
HETATM 22 C C22 XR8 . . . J 2 15.816 72.28 -8.427 1 28.23 ? C22 XR8 401 B 1 
HETATM 23 C C23 XR8 . . . J 2 16.924 73.268 -8.945 1 31 ? C23 XR8 401 B 1 
HETATM 24 C C24 XR8 . . . J 2 18.084 73.179 -8.109 1 33.39 ? C24 XR8 401 B 1 
HETATM 25 C C25 XR8 . . . J 2 19.403 74.006 -8.19 1 39.24 ? C25 XR8 401 B 1 
HETATM 26 N N26 XR8 . . . J 2 19.505 74.597 -7.134 1 46.12 ? N26 XR8 401 B 1 
HETATM 27 C C27 XR8 . . . J 2 20.906 75.322 -6.831 1 47.37 ? C27 XR8 401 B 1 
HETATM 28 C C28 XR8 . . . J 2 20.736 76.119 -5.78 1 45.76 ? C28 XR8 401 B 1 
HETATM 29 C C29 XR8 . . . J 2 19.33 76.567 -5.935 1 46.49 ? C29 XR8 401 B 1 
HETATM 30 C C30 XR8 . . . J 2 18.603 75.469 -6.799 1 47.27 ? C30 XR8 401 B 1 
HETATM 31 S S31 XR8 . . . J 2 17.843 72.075 -6.914 1 28.76 ? S31 XR8 401 B 1 
HETATM 32 C C32 XR8 . . . J 2 14.123 70.524 -6.322 1 22.53 ? C32 XR8 401 B 1 
HETATM 33 C C33 XR8 . . . J 2 13.479 69.594 -5.516 1 21.69 ? C33 XR8 401 B 1 
HETATM 34 C C34 XR8 . . . J 2 14.231 68.718 -4.736 1 21.19 ? C34 XR8 401 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           34 
#