data_7LC1 # _model_server_result.job_id JD6f1eQWGyQu9Zxvpx05xQ _model_server_result.datetime_utc '2024-10-18 05:24:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lc1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":202}' # _entry.id 7LC1 # _exptl.entry_id 7LC1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.32 _cell.angle_gamma 90 _cell.entry_id 7LC1 _cell.length_a 42.76 _cell.length_b 97.07 _cell.length_c 96.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 E MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.721 ? metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 E MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc3 E MG MG . A MG 201 1_555 F O3G GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc4 E MG MG . A MG 201 1_555 F O1B GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc5 E MG MG . A MG 201 1_555 I O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc6 E MG MG . A MG 201 1_555 I O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc7 C OG SER 18 C SER 17 1_555 G MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? metalc ? metalc8 C OG1 THR 36 C THR 35 1_555 G MG MG . C MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? metalc ? metalc9 G MG MG . C MG 201 1_555 H O1G GNP . C GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc10 G MG MG . C MG 201 1_555 H O1B GNP . C GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc11 G MG MG . C MG 201 1_555 K O HOH . C HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc12 G MG MG . C MG 201 1_555 K O HOH . C HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 7LC1 _atom_sites.fract_transf_matrix[1][1] 0.023386 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000949 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 201 1 MG MG . F 4 GNP A 1 202 5 GNP GNP . G 3 MG C 1 201 2 MG MG . H 4 GNP C 1 202 6 GNP GNP . I 5 HOH A 1 301 26 HOH HOH . I 5 HOH A 2 302 32 HOH HOH . I 5 HOH A 3 303 12 HOH HOH . I 5 HOH A 4 304 3 HOH HOH . I 5 HOH A 5 305 33 HOH HOH . I 5 HOH A 6 306 8 HOH HOH . I 5 HOH A 7 307 25 HOH HOH . I 5 HOH A 8 308 6 HOH HOH . I 5 HOH A 9 309 4 HOH HOH . I 5 HOH A 10 310 23 HOH HOH . I 5 HOH A 11 311 10 HOH HOH . I 5 HOH A 12 312 9 HOH HOH . I 5 HOH A 13 313 42 HOH HOH . I 5 HOH A 14 314 31 HOH HOH . I 5 HOH A 15 315 36 HOH HOH . I 5 HOH A 16 316 35 HOH HOH . I 5 HOH A 17 317 41 HOH HOH . J 5 HOH B 1 601 20 HOH HOH . J 5 HOH B 2 602 22 HOH HOH . J 5 HOH B 3 603 15 HOH HOH . J 5 HOH B 4 604 18 HOH HOH . J 5 HOH B 5 605 28 HOH HOH . J 5 HOH B 6 606 7 HOH HOH . J 5 HOH B 7 607 14 HOH HOH . J 5 HOH B 8 608 16 HOH HOH . J 5 HOH B 9 609 17 HOH HOH . J 5 HOH B 10 610 39 HOH HOH . J 5 HOH B 11 611 34 HOH HOH . K 5 HOH C 1 301 1 HOH HOH . K 5 HOH C 2 302 2 HOH HOH . K 5 HOH C 3 303 37 HOH HOH . K 5 HOH C 4 304 38 HOH HOH . K 5 HOH C 5 305 27 HOH HOH . K 5 HOH C 6 306 21 HOH HOH . K 5 HOH C 7 307 5 HOH HOH . K 5 HOH C 8 308 13 HOH HOH . K 5 HOH C 9 309 40 HOH HOH . L 5 HOH D 1 601 24 HOH HOH . L 5 HOH D 2 602 29 HOH HOH . L 5 HOH D 3 603 30 HOH HOH . L 5 HOH D 4 604 19 HOH HOH . L 5 HOH D 5 605 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . H 4 -22.792 -0.842 -93.072 1 44.21 ? PG GNP 202 C 1 HETATM 2 O O1G GNP . . . H 4 -22.045 0.187 -92.329 1 53.23 ? O1G GNP 202 C 1 HETATM 3 O O2G GNP . . . H 4 -22.21 -2.159 -92.705 1 48.36 ? O2G GNP 202 C 1 HETATM 4 O O3G GNP . . . H 4 -22.618 -0.621 -94.537 1 47.46 ? O3G GNP 202 C 1 HETATM 5 N N3B GNP . . . H 4 -24.348 -0.764 -92.621 1 50.22 ? N3B GNP 202 C 1 HETATM 6 P PB GNP . . . H 4 -24.86 -0.973 -91.095 1 43.49 ? PB GNP 202 C 1 HETATM 7 O O1B GNP . . . H 4 -24.214 0.005 -90.166 1 48.73 ? O1B GNP 202 C 1 HETATM 8 O O2B GNP . . . H 4 -24.906 -2.415 -90.689 1 51.38 ? O2B GNP 202 C 1 HETATM 9 O O3A GNP . . . H 4 -26.387 -0.546 -91.187 1 57.61 ? O3A GNP 202 C 1 HETATM 10 P PA GNP . . . H 4 -27.152 0.832 -90.949 1 44.13 ? PA GNP 202 C 1 HETATM 11 O O1A GNP . . . H 4 -26.635 1.821 -91.932 1 49.15 ? O1A GNP 202 C 1 HETATM 12 O O2A GNP . . . H 4 -27.117 1.161 -89.501 1 38.99 ? O2A GNP 202 C 1 HETATM 13 O O5' GNP . . . H 4 -28.627 0.397 -91.363 1 55.8 ? O5' GNP 202 C 1 HETATM 14 C C5' GNP . . . H 4 -28.901 0.195 -92.767 1 55.03 ? C5' GNP 202 C 1 HETATM 15 C C4' GNP . . . H 4 -30.355 0.478 -93.047 1 56.09 ? C4' GNP 202 C 1 HETATM 16 O O4' GNP . . . H 4 -31.168 -0.335 -92.166 1 54.96 ? O4' GNP 202 C 1 HETATM 17 C C3' GNP . . . H 4 -30.821 1.922 -92.82 1 59.37 ? C3' GNP 202 C 1 HETATM 18 O O3' GNP . . . H 4 -31.828 2.278 -93.756 1 60.59 ? O3' GNP 202 C 1 HETATM 19 C C2' GNP . . . H 4 -31.4 1.864 -91.407 1 57.48 ? C2' GNP 202 C 1 HETATM 20 O O2' GNP . . . H 4 -32.366 2.859 -91.166 1 58.75 ? O2' GNP 202 C 1 HETATM 21 C C1' GNP . . . H 4 -32.036 0.483 -91.421 1 54.93 ? C1' GNP 202 C 1 HETATM 22 N N9 GNP . . . H 4 -32.18 -0.097 -90.096 1 54.35 ? N9 GNP 202 C 1 HETATM 23 C C8 GNP . . . H 4 -31.197 -0.252 -89.156 1 54.96 ? C8 GNP 202 C 1 HETATM 24 N N7 GNP . . . H 4 -31.624 -0.805 -88.049 1 52.85 ? N7 GNP 202 C 1 HETATM 25 C C5 GNP . . . H 4 -32.974 -1.025 -88.28 1 56.03 ? C5 GNP 202 C 1 HETATM 26 C C6 GNP . . . H 4 -33.956 -1.598 -87.441 1 59.48 ? C6 GNP 202 C 1 HETATM 27 O O6 GNP . . . H 4 -33.82 -2.038 -86.294 1 62.74 ? O6 GNP 202 C 1 HETATM 28 N N1 GNP . . . H 4 -35.199 -1.634 -88.069 1 60.01 ? N1 GNP 202 C 1 HETATM 29 C C2 GNP . . . H 4 -35.464 -1.179 -89.335 1 57.28 ? C2 GNP 202 C 1 HETATM 30 N N2 GNP . . . H 4 -36.726 -1.297 -89.763 1 59.11 ? N2 GNP 202 C 1 HETATM 31 N N3 GNP . . . H 4 -34.544 -0.637 -90.129 1 55.5 ? N3 GNP 202 C 1 HETATM 32 C C4 GNP . . . H 4 -33.329 -0.594 -89.537 1 55.16 ? C4 GNP 202 C 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #