data_7LC2 # _model_server_result.job_id ry1pI5R6XoMLxmOzlwpyZA _model_server_result.datetime_utc '2024-11-23 04:26:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 7LC2 # _exptl.entry_id 7LC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.52 _cell.angle_gamma 90 _cell.entry_id 7LC2 _cell.length_a 150 _cell.length_b 45.64 _cell.length_c 91.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,I,K 1 1 B,C,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 2 A MSE 1 1_555 A N THR 3 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C ALA 67 A ALA 66 1_555 A N MSE 68 A MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 68 A MSE 67 1_555 A N ARG 69 A ARG 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 A C TYR 72 A TYR 71 1_555 A N MSE 73 A MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 73 A MSE 72 1_555 A N ARG 74 A ARG 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C PRO 111 A PRO 110 1_555 A N MSE 112 A MSE 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 112 A MSE 111 1_555 A N VAL 113 A VAL 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C MSE 2 B MSE 1 1_555 B N THR 3 B THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C ALA 67 B ALA 66 1_555 B N MSE 68 B MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C MSE 68 B MSE 67 1_555 B N ARG 69 B ARG 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale12 B C TYR 72 B TYR 71 1_555 B N MSE 73 B MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 B C MSE 73 B MSE 72 1_555 B N ARG 74 B ARG 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale14 B C PRO 111 B PRO 110 1_555 B N MSE 112 B MSE 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 B C MSE 112 B MSE 111 1_555 B N VAL 113 B VAL 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc3 E O2G GNP . A GNP 201 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc4 E O2B GNP . A GNP 201 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc5 F MG MG . A MG 202 1_555 I O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc6 F MG MG . A MG 202 1_555 I O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc7 B OG SER 18 B SER 17 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc8 B OG1 THR 36 B THR 35 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc9 G O2G GNP . B GNP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc10 G O2B GNP . B GNP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc11 H MG MG . B MG 202 1_555 J O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc12 H MG MG . B MG 202 1_555 J O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 7LC2 _atom_sites.fract_transf_matrix[1][1] 0.006667 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003774 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GNP A 1 201 4 GNP GNP . F 4 MG A 1 202 1 MG MG . G 3 GNP B 1 201 5 GNP GNP . H 4 MG B 1 202 2 MG MG . I 5 HOH A 1 301 3 HOH HOH . I 5 HOH A 2 302 14 HOH HOH . I 5 HOH A 3 303 4 HOH HOH . I 5 HOH A 4 304 18 HOH HOH . I 5 HOH A 5 305 5 HOH HOH . I 5 HOH A 6 306 12 HOH HOH . I 5 HOH A 7 307 23 HOH HOH . J 5 HOH B 1 301 2 HOH HOH . J 5 HOH B 2 302 8 HOH HOH . J 5 HOH B 3 303 15 HOH HOH . J 5 HOH B 4 304 1 HOH HOH . J 5 HOH B 5 305 17 HOH HOH . J 5 HOH B 6 306 13 HOH HOH . J 5 HOH B 7 307 20 HOH HOH . J 5 HOH B 8 308 16 HOH HOH . J 5 HOH B 9 309 19 HOH HOH . J 5 HOH B 10 310 9 HOH HOH . J 5 HOH B 11 311 22 HOH HOH . J 5 HOH B 12 312 6 HOH HOH . K 5 HOH E 1 401 21 HOH HOH . K 5 HOH E 2 402 11 HOH HOH . K 5 HOH E 3 403 7 HOH HOH . K 5 HOH E 4 404 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . G 3 89.714 40.348 26.222 1 62 ? PG GNP 201 B 1 HETATM 2 O O1G GNP . . . G 3 90.574 40.512 27.434 1 76.01 ? O1G GNP 201 B 1 HETATM 3 O O2G GNP . . . G 3 88.392 40.959 26.501 1 68.91 ? O2G GNP 201 B 1 HETATM 4 O O3G GNP . . . G 3 89.512 38.895 25.974 1 62.15 ? O3G GNP 201 B 1 HETATM 5 N N3B GNP . . . G 3 90.332 41.076 24.913 1 64.35 ? N3B GNP 201 B 1 HETATM 6 P PB GNP . . . G 3 89.656 41.083 23.439 1 63.26 ? PB GNP 201 B 1 HETATM 7 O O1B GNP . . . G 3 90.139 39.944 22.596 1 63.19 ? O1B GNP 201 B 1 HETATM 8 O O2B GNP . . . G 3 88.186 41.344 23.513 1 65.79 ? O2B GNP 201 B 1 HETATM 9 O O3A GNP . . . G 3 90.292 42.387 22.784 1 67.89 ? O3A GNP 201 B 1 HETATM 10 P PA GNP . . . G 3 89.769 43.857 22.448 1 66.96 ? PA GNP 201 B 1 HETATM 11 O O1A GNP . . . G 3 88.657 43.753 21.468 1 63.16 ? O1A GNP 201 B 1 HETATM 12 O O2A GNP . . . G 3 89.536 44.615 23.706 1 72.34 ? O2A GNP 201 B 1 HETATM 13 O O5' GNP . . . G 3 91.061 44.448 21.726 1 74.3 ? O5' GNP 201 B 1 HETATM 14 C C5' GNP . . . G 3 92.169 44.818 22.576 1 78.93 ? C5' GNP 201 B 1 HETATM 15 C C4' GNP . . . G 3 92.945 45.935 21.925 1 84.05 ? C4' GNP 201 B 1 HETATM 16 O O4' GNP . . . G 3 93.23 45.567 20.552 1 80.18 ? O4' GNP 201 B 1 HETATM 17 C C3' GNP . . . G 3 92.238 47.295 21.86 1 91.41 ? C3' GNP 201 B 1 HETATM 18 O O3' GNP . . . G 3 93.135 48.363 22.132 1 103.46 ? O3' GNP 201 B 1 HETATM 19 C C2' GNP . . . G 3 91.75 47.369 20.413 1 84.95 ? C2' GNP 201 B 1 HETATM 20 O O2' GNP . . . G 3 91.687 48.698 19.953 1 95.28 ? O2' GNP 201 B 1 HETATM 21 C C1' GNP . . . G 3 92.851 46.609 19.689 1 78.8 ? C1' GNP 201 B 1 HETATM 22 N N9 GNP . . . G 3 92.422 46.023 18.429 1 77.83 ? N9 GNP 201 B 1 HETATM 23 C C8 GNP . . . G 3 91.441 45.084 18.249 1 72.92 ? C8 GNP 201 B 1 HETATM 24 N N7 GNP . . . G 3 91.276 44.743 16.995 1 71.56 ? N7 GNP 201 B 1 HETATM 25 C C5 GNP . . . G 3 92.209 45.508 16.309 1 79.43 ? C5 GNP 201 B 1 HETATM 26 C C6 GNP . . . G 3 92.498 45.569 14.926 1 78.4 ? C6 GNP 201 B 1 HETATM 27 O O6 GNP . . . G 3 91.97 44.933 14.007 1 78.86 ? O6 GNP 201 B 1 HETATM 28 N N1 GNP . . . G 3 93.524 46.472 14.656 1 82.2 ? N1 GNP 201 B 1 HETATM 29 C C2 GNP . . . G 3 94.182 47.225 15.596 1 80.3 ? C2 GNP 201 B 1 HETATM 30 N N2 GNP . . . G 3 95.138 48.047 15.147 1 86.67 ? N2 GNP 201 B 1 HETATM 31 N N3 GNP . . . G 3 93.913 47.175 16.898 1 85.21 ? N3 GNP 201 B 1 HETATM 32 C C4 GNP . . . G 3 92.921 46.299 17.181 1 83.06 ? C4 GNP 201 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #