data_7LCB
#
_model_server_result.job_id            E_jSE3uR_txB5DuHUpEgaA 
_model_server_result.datetime_utc      '2024-11-24 05:55:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lcb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    7LCB 
#
_exptl.entry_id    7LCB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              390.47 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            prostratin 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.29 
_cell.angle_gamma         90 
_cell.entry_id            7LCB 
_cell.length_a            34.402 
_cell.length_b            25.869 
_cell.length_c            57.964 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LCB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 3 A HIS 231 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc2 A SG CYS 16 A CYS 244 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc3 A SG CYS 19 A CYS 247 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc4 A SG CYS 33 A CYS 261 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc5 A SG CYS 36 A CYS 264 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc6 A ND1 HIS 41 A HIS 269 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc7 A SG CYS 44 A CYS 272 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc8 A SG CYS 52 A CYS 280 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
#
_chem_comp.formula           'C22 H30 O6' 
_chem_comp.formula_weight    390.47 
_chem_comp.id                XYV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              prostratin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '12-deoxyphorbol-13-acetate;(1aR,1bS,4aR,7aS,7bR,8R,9aS)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 XYV sing 431 n n 
C28 C26 XYV sing 432 n n 
C03 C02 XYV sing 433 n n 
C03 C04 XYV sing 434 n n 
C26 O25 XYV sing 435 n n 
C26 O27 XYV doub 436 n n 
C02 C10 XYV sing 437 n n 
O25 C04 XYV sing 438 n n 
C23 C13 XYV sing 439 n n 
C04 C06 XYV sing 440 n n 
C04 C05 XYV sing 441 n n 
C12 C13 XYV doub 442 n n 
C12 C11 XYV sing 443 n n 
O24 C10 XYV sing 444 n n 
C10 C11 XYV sing 445 n n 
C10 C09 XYV sing 446 n n 
C13 C14 XYV sing 447 n n 
C06 C08 XYV sing 448 n n 
C06 C07 XYV sing 449 n n 
C06 C05 XYV sing 450 n n 
C11 C16 XYV sing 451 n n 
C05 C09 XYV sing 452 n n 
C14 C16 XYV sing 453 n n 
C14 O15 XYV doub 454 n n 
C09 C19 XYV sing 455 n n 
O22 C16 XYV sing 456 n n 
C16 C17 XYV sing 457 n n 
C19 C18 XYV doub 458 n n 
C17 C18 XYV sing 459 n n 
C18 C20 XYV sing 460 n n 
C20 O21 XYV sing 461 n n 
C17 H2 XYV sing 462 n n 
C20 H3 XYV sing 463 n n 
C20 H4 XYV sing 464 n n 
C28 H5 XYV sing 465 n n 
C28 H6 XYV sing 466 n n 
C28 H7 XYV sing 467 n n 
C01 H8 XYV sing 468 n n 
C01 H9 XYV sing 469 n n 
C01 H10 XYV sing 470 n n 
C02 H11 XYV sing 471 n n 
C03 H12 XYV sing 472 n n 
C03 H13 XYV sing 473 n n 
C05 H14 XYV sing 474 n n 
C07 H15 XYV sing 475 n n 
C07 H16 XYV sing 476 n n 
C07 H17 XYV sing 477 n n 
C08 H18 XYV sing 478 n n 
C08 H19 XYV sing 479 n n 
C08 H20 XYV sing 480 n n 
C09 H21 XYV sing 481 n n 
C11 H22 XYV sing 482 n n 
C12 H23 XYV sing 483 n n 
C19 H25 XYV sing 484 n n 
C23 H27 XYV sing 485 n n 
C23 H28 XYV sing 486 n n 
C23 H29 XYV sing 487 n n 
O21 H30 XYV sing 488 n n 
O22 H31 XYV sing 489 n n 
O24 H32 XYV sing 490 n n 
C17 H1 XYV sing 491 n n 
#
_atom_sites.entry_id                     7LCB 
_atom_sites.fract_transf_matrix[1][1]    0.029068 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003717 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.038656 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017393 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 1 ZN ZN . 
C 2 ZN A 1 302 2 ZN ZN . 
D 3 XYV A 1 303 1 XYV LIG . 
E 4 XP5 A 1 304 1 XP5 PCL . 
F 5 HOH A 1 401 25 HOH HOH . 
F 5 HOH A 2 402 32 HOH HOH . 
F 5 HOH A 3 403 26 HOH HOH . 
F 5 HOH A 4 404 3 HOH HOH . 
F 5 HOH A 5 405 9 HOH HOH . 
F 5 HOH A 6 406 2 HOH HOH . 
F 5 HOH A 7 407 35 HOH HOH . 
F 5 HOH A 8 408 36 HOH HOH . 
F 5 HOH A 9 409 15 HOH HOH . 
F 5 HOH A 10 410 16 HOH HOH . 
F 5 HOH A 11 411 18 HOH HOH . 
F 5 HOH A 12 412 4 HOH HOH . 
F 5 HOH A 13 413 27 HOH HOH . 
F 5 HOH A 14 414 5 HOH HOH . 
F 5 HOH A 15 415 12 HOH HOH . 
F 5 HOH A 16 416 28 HOH HOH . 
F 5 HOH A 17 417 11 HOH HOH . 
F 5 HOH A 18 418 19 HOH HOH . 
F 5 HOH A 19 419 13 HOH HOH . 
F 5 HOH A 20 420 38 HOH HOH . 
F 5 HOH A 21 421 37 HOH HOH . 
F 5 HOH A 22 422 23 HOH HOH . 
F 5 HOH A 23 423 30 HOH HOH . 
F 5 HOH A 24 424 10 HOH HOH . 
F 5 HOH A 25 425 31 HOH HOH . 
F 5 HOH A 26 426 7 HOH HOH . 
F 5 HOH A 27 427 21 HOH HOH . 
F 5 HOH A 28 428 34 HOH HOH . 
F 5 HOH A 29 429 17 HOH HOH . 
F 5 HOH A 30 430 22 HOH HOH . 
F 5 HOH A 31 431 39 HOH HOH . 
F 5 HOH A 32 432 24 HOH HOH . 
F 5 HOH A 33 433 8 HOH HOH . 
F 5 HOH A 34 434 20 HOH HOH . 
F 5 HOH A 35 435 14 HOH HOH . 
F 5 HOH A 36 436 33 HOH HOH . 
F 5 HOH A 37 437 29 HOH HOH . 
F 5 HOH A 38 438 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 XYV . . . D 3 -3.871 0.728 1.01 1 16.57 ? C10 XYV 303 A 1 
HETATM 2 C C13 XYV . . . D 3 -2.343 -2.813 1.011 1 20.22 ? C13 XYV 303 A 1 
HETATM 3 C C17 XYV . . . D 3 -3.648 -1.178 3.965 1 10.64 ? C17 XYV 303 A 1 
HETATM 4 C C20 XYV . . . D 3 -3.143 0.607 5.797 1 9.07 ? C20 XYV 303 A 1 
HETATM 5 C C26 XYV . . . D 3 -4.509 4.81 -0.3 1 15.88 ? C26 XYV 303 A 1 
HETATM 6 C C28 XYV . . . D 3 -4.504 6.311 -0.669 1 27.39 ? C28 XYV 303 A 1 
HETATM 7 C C01 XYV . . . D 3 -4.048 0.21 -1.522 1 22.29 ? C01 XYV 303 A 1 
HETATM 8 C C02 XYV . . . D 3 -4.819 0.44 -0.196 1 19.22 ? C02 XYV 303 A 1 
HETATM 9 C C03 XYV . . . D 3 -5.888 1.606 -0.419 1 21.57 ? C03 XYV 303 A 1 
HETATM 10 C C04 XYV . . . D 3 -5.66 2.868 0.398 1 25.93 ? C04 XYV 303 A 1 
HETATM 11 C C05 XYV . . . D 3 -5.461 2.614 1.903 1 14.14 ? C05 XYV 303 A 1 
HETATM 12 C C06 XYV . . . D 3 -6.882 2.762 1.362 1 16.17 ? C06 XYV 303 A 1 
HETATM 13 C C07 XYV . . . D 3 -7.58 4.092 1.755 1 21.88 ? C07 XYV 303 A 1 
HETATM 14 C C08 XYV . . . D 3 -7.738 1.471 1.432 1 20.65 ? C08 XYV 303 A 1 
HETATM 15 C C09 XYV . . . D 3 -4.722 1.289 2.2 1 13.37 ? C09 XYV 303 A 1 
HETATM 16 C C11 XYV . . . D 3 -3.029 -0.535 1.619 1 14.44 ? C11 XYV 303 A 1 
HETATM 17 C C12 XYV . . . D 3 -2.278 -1.384 0.567 1 15.75 ? C12 XYV 303 A 1 
HETATM 18 C C14 XYV . . . D 3 -3.297 -2.928 2.19 1 13.65 ? C14 XYV 303 A 1 
HETATM 19 C C16 XYV . . . D 3 -3.861 -1.533 2.518 1 17.37 ? C16 XYV 303 A 1 
HETATM 20 C C18 XYV . . . D 3 -3.655 0.276 4.381 1 11.61 ? C18 XYV 303 A 1 
HETATM 21 C C19 XYV . . . D 3 -3.89 1.458 3.486 1 11.51 ? C19 XYV 303 A 1 
HETATM 22 C C23 XYV . . . D 3 -1.828 -4.022 0.205 1 25.58 ? C23 XYV 303 A 1 
HETATM 23 O O15 XYV . . . D 3 -3.577 -3.957 2.728 1 14.99 ? O15 XYV 303 A 1 
HETATM 24 O O21 XYV . . . D 3 -1.818 0.126 5.87 1 8.04 ? O21 XYV 303 A 1 
HETATM 25 O O22 XYV . . . D 3 -5.245 -1.604 2.22 1 14.06 ? O22 XYV 303 A 1 
HETATM 26 O O24 XYV . . . D 3 -2.892 1.661 0.616 1 19.48 ? O24 XYV 303 A 1 
HETATM 27 O O25 XYV . . . D 3 -5.751 4.161 -0.17 1 27.06 ? O25 XYV 303 A 1 
HETATM 28 O O27 XYV . . . D 3 -3.483 4.232 -0.128 1 18.57 ? O27 XYV 303 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#