data_7LCB # _model_server_result.job_id oKKVmHQEH9llpMshtOOvVg _model_server_result.datetime_utc '2024-11-27 23:23:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lcb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 7LCB # _exptl.entry_id 7LCB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.568 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4S,7R)-7-(heptanoyloxy)-4-hydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphahexadecan-1-aminium 4-oxide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.29 _cell.angle_gamma 90 _cell.entry_id 7LCB _cell.length_a 34.402 _cell.length_b 25.869 _cell.length_c 57.964 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LCB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 3 A HIS 231 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc2 A SG CYS 16 A CYS 244 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc3 A SG CYS 19 A CYS 247 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 A SG CYS 33 A CYS 261 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 A SG CYS 36 A CYS 264 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc6 A ND1 HIS 41 A HIS 269 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc7 A SG CYS 44 A CYS 272 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc8 A SG CYS 52 A CYS 280 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? # _chem_comp.formula 'C22 H45 N O8 P 1' _chem_comp.formula_weight 482.568 _chem_comp.id XP5 _chem_comp.mon_nstd_flag . _chem_comp.name '(4S,7R)-7-(heptanoyloxy)-4-hydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphahexadecan-1-aminium 4-oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 XP5 doub 355 n n O2 P1 XP5 sing 356 n n P1 O3 XP5 sing 357 n n P1 O4 XP5 sing 358 n n O3 C1 XP5 sing 359 n n C1 C2 XP5 sing 360 n n C2 N1 XP5 sing 361 n n N1 C3 XP5 sing 362 n n N1 C4 XP5 sing 363 n n N1 C5 XP5 sing 364 n n O4 C6 XP5 sing 365 n n C6 CAM XP5 sing 366 n n C8 O5 XP5 sing 367 n n C8 CAM XP5 sing 368 n n O5 C9 XP5 sing 369 n n C9 O6 XP5 doub 370 n n C9 C10 XP5 sing 371 n n C10 C11 XP5 sing 372 n n C11 C12 XP5 sing 373 n n C12 C13 XP5 sing 374 n n C13 C14 XP5 sing 375 n n C14 C15 XP5 sing 376 n n O7 C17 XP5 doub 377 n n C17 O8 XP5 sing 378 n n C17 C18 XP5 sing 379 n n O8 CAM XP5 sing 380 n n C18 C19 XP5 sing 381 n n C19 C20 XP5 sing 382 n n C20 C21 XP5 sing 383 n n C21 C22 XP5 sing 384 n n C22 C23 XP5 sing 385 n n O2 H2 XP5 sing 386 n n C1 H11C XP5 sing 387 n n C1 H12C XP5 sing 388 n n C2 H21C XP5 sing 389 n n C2 H22C XP5 sing 390 n n C3 H31C XP5 sing 391 n n C3 H32C XP5 sing 392 n n C3 H33C XP5 sing 393 n n C4 H41C XP5 sing 394 n n C4 H42C XP5 sing 395 n n C4 H43C XP5 sing 396 n n C5 H51C XP5 sing 397 n n C5 H52C XP5 sing 398 n n C5 H53C XP5 sing 399 n n C6 H61C XP5 sing 400 n n C6 H62C XP5 sing 401 n n CAM HAM XP5 sing 402 n n C8 H81C XP5 sing 403 n n C8 H82C XP5 sing 404 n n C10 H101 XP5 sing 405 n n C10 H102 XP5 sing 406 n n C11 H111 XP5 sing 407 n n C11 H112 XP5 sing 408 n n C12 H121 XP5 sing 409 n n C12 H122 XP5 sing 410 n n C13 H131 XP5 sing 411 n n C13 H132 XP5 sing 412 n n C14 H141 XP5 sing 413 n n C14 H142 XP5 sing 414 n n C15 H151 XP5 sing 415 n n C15 H152 XP5 sing 416 n n C15 H153 XP5 sing 417 n n C18 H181 XP5 sing 418 n n C18 H182 XP5 sing 419 n n C19 H191 XP5 sing 420 n n C19 H192 XP5 sing 421 n n C20 H201 XP5 sing 422 n n C20 H202 XP5 sing 423 n n C21 H211 XP5 sing 424 n n C21 H212 XP5 sing 425 n n C22 H221 XP5 sing 426 n n C22 H222 XP5 sing 427 n n C23 H231 XP5 sing 428 n n C23 H232 XP5 sing 429 n n C23 H233 XP5 sing 430 n n # _atom_sites.entry_id 7LCB _atom_sites.fract_transf_matrix[1][1] 0.029068 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003717 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.038656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 2 ZN A 1 302 2 ZN ZN . D 3 XYV A 1 303 1 XYV LIG . E 4 XP5 A 1 304 1 XP5 PCL . F 5 HOH A 1 401 25 HOH HOH . F 5 HOH A 2 402 32 HOH HOH . F 5 HOH A 3 403 26 HOH HOH . F 5 HOH A 4 404 3 HOH HOH . F 5 HOH A 5 405 9 HOH HOH . F 5 HOH A 6 406 2 HOH HOH . F 5 HOH A 7 407 35 HOH HOH . F 5 HOH A 8 408 36 HOH HOH . F 5 HOH A 9 409 15 HOH HOH . F 5 HOH A 10 410 16 HOH HOH . F 5 HOH A 11 411 18 HOH HOH . F 5 HOH A 12 412 4 HOH HOH . F 5 HOH A 13 413 27 HOH HOH . F 5 HOH A 14 414 5 HOH HOH . F 5 HOH A 15 415 12 HOH HOH . F 5 HOH A 16 416 28 HOH HOH . F 5 HOH A 17 417 11 HOH HOH . F 5 HOH A 18 418 19 HOH HOH . F 5 HOH A 19 419 13 HOH HOH . F 5 HOH A 20 420 38 HOH HOH . F 5 HOH A 21 421 37 HOH HOH . F 5 HOH A 22 422 23 HOH HOH . F 5 HOH A 23 423 30 HOH HOH . F 5 HOH A 24 424 10 HOH HOH . F 5 HOH A 25 425 31 HOH HOH . F 5 HOH A 26 426 7 HOH HOH . F 5 HOH A 27 427 21 HOH HOH . F 5 HOH A 28 428 34 HOH HOH . F 5 HOH A 29 429 17 HOH HOH . F 5 HOH A 30 430 22 HOH HOH . F 5 HOH A 31 431 39 HOH HOH . F 5 HOH A 32 432 24 HOH HOH . F 5 HOH A 33 433 8 HOH HOH . F 5 HOH A 34 434 20 HOH HOH . F 5 HOH A 35 435 14 HOH HOH . F 5 HOH A 36 436 33 HOH HOH . F 5 HOH A 37 437 29 HOH HOH . F 5 HOH A 38 438 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 XP5 . . . E 4 -10.72 -4.296 5.912 1 33.14 ? O1 XP5 304 A 1 HETATM 2 O O2 XP5 . . . E 4 -12.761 -5.601 6.01 1 43.57 -1 O2 XP5 304 A 1 HETATM 3 P P1 XP5 . . . E 4 -11.261 -5.659 6.12 1 52.69 ? P1 XP5 304 A 1 HETATM 4 O O3 XP5 . . . E 4 -10.962 -6.224 7.647 1 39.81 ? O3 XP5 304 A 1 HETATM 5 C C1 XP5 . . . E 4 -10.143 -7.36 7.844 1 46.54 ? C1 XP5 304 A 1 HETATM 6 C C2 XP5 . . . E 4 -9.001 -7.096 8.858 1 43.71 ? C2 XP5 304 A 1 HETATM 7 N N1 XP5 . . . E 4 -9.312 -6.364 10.096 1 51.5 ? N1 XP5 304 A 1 HETATM 8 C C3 XP5 . . . E 4 -10.236 -7.032 10.997 1 45.34 ? C3 XP5 304 A 1 HETATM 9 C C4 XP5 . . . E 4 -9.823 -5.04 9.792 1 40.4 ? C4 XP5 304 A 1 HETATM 10 C C5 XP5 . . . E 4 -8.031 -6.261 10.771 1 40.89 ? C5 XP5 304 A 1 HETATM 11 O O4 XP5 . . . E 4 -10.73 -6.694 4.942 1 35.72 ? O4 XP5 304 A 1 HETATM 12 C C6 XP5 . . . E 4 -11.044 -8.044 5.105 1 39.28 ? C6 XP5 304 A 1 HETATM 13 C C8 XP5 . . . E 4 -10.288 -10.343 4.284 1 48.09 ? C8 XP5 304 A 1 HETATM 14 O O5 XP5 . . . E 4 -9.407 -10.924 3.338 1 52.92 ? O5 XP5 304 A 1 HETATM 15 C C9 XP5 . . . E 4 -8.503 -11.915 3.84 1 36.74 ? C9 XP5 304 A 1 HETATM 16 O O6 XP5 . . . E 4 -7.887 -12.512 3.043 1 42.46 ? O6 XP5 304 A 1 HETATM 17 C C10 XP5 . . . E 4 -8.33 -12.172 5.375 1 48.31 ? C10 XP5 304 A 1 HETATM 18 C C11 XP5 . . . E 4 -8.264 -13.667 5.84 1 38.52 ? C11 XP5 304 A 1 HETATM 19 C C12 XP5 . . . E 4 -7.899 -13.984 7.341 1 29.59 ? C12 XP5 304 A 1 HETATM 20 C C13 XP5 . . . E 4 -6.512 -13.499 7.844 1 29.48 ? C13 XP5 304 A 1 HETATM 21 C C14 XP5 . . . E 4 -6.497 -13.245 9.362 1 31.87 ? C14 XP5 304 A 1 HETATM 22 C C15 XP5 . . . E 4 -5.113 -13.41 10.004 1 47.3 ? C15 XP5 304 A 1 HETATM 23 O O7 XP5 . . . E 4 -7.608 -7.667 3.651 1 39.74 ? O7 XP5 304 A 1 HETATM 24 C C17 XP5 . . . E 4 -8.547 -7.581 2.939 1 42.82 ? C17 XP5 304 A 1 HETATM 25 O O8 XP5 . . . E 4 -9.766 -8.259 3.17 1 38.39 ? O8 XP5 304 A 1 HETATM 26 C C18 XP5 . . . E 4 -8.517 -6.712 1.655 1 40.05 ? C18 XP5 304 A 1 HETATM 27 C C19 XP5 . . . E 4 -7.142 -6.549 1.007 1 29.34 ? C19 XP5 304 A 1 HETATM 28 C C20 XP5 . . . E 4 -6.997 -5.064 0.651 1 30.8 ? C20 XP5 304 A 1 HETATM 29 C C21 XP5 . . . E 4 -5.63 -4.74 0.034 1 26.57 ? C21 XP5 304 A 1 HETATM 30 C C22 XP5 . . . E 4 -5.77 -3.958 -1.27 1 31.26 ? C22 XP5 304 A 1 HETATM 31 C C23 XP5 . . . E 4 -4.584 -4.245 -2.199 1 36.41 ? C23 XP5 304 A 1 HETATM 32 C CAM XP5 . . . E 4 -9.898 -8.851 4.456 1 39.39 ? CAM XP5 304 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #