data_7LCO # _model_server_result.job_id fVtUy591VGYyMmEdIbMKOw _model_server_result.datetime_utc '2024-11-21 09:08:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7LCO # _exptl.entry_id 7LCO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.463 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3-fluorophenyl)methyl [(2S)-3-cyclopropyl-1-oxo-1-({(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)propan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.95 _cell.angle_gamma 90 _cell.entry_id 7LCO _cell.length_a 114.26 _cell.length_b 53.35 _cell.length_c 45.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -9.448057 0 44.641137 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C12 _struct_conn.ptnr2_label_comp_id XTJ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id XTJ _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.964 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 F N3 O5' _chem_comp.formula_weight 421.463 _chem_comp.id XTJ _chem_comp.mon_nstd_flag . _chem_comp.name '(3-fluorophenyl)methyl [(2S)-3-cyclopropyl-1-oxo-1-({(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)propan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F28 C27 XTJ sing 376 n n C27 C29 XTJ doub 377 n y C27 C26 XTJ sing 378 n y C29 C23 XTJ sing 379 n y C26 C25 XTJ doub 380 n y C18 C16 XTJ sing 381 n n C18 C17 XTJ sing 382 n n C25 C24 XTJ sing 383 n y C15 C16 XTJ sing 384 n n C15 C14 XTJ sing 385 n n O21 C22 XTJ sing 386 n n O21 C20 XTJ sing 387 n n C23 C24 XTJ doub 388 n y C23 C22 XTJ sing 389 n n N19 C20 XTJ sing 390 n n N19 C14 XTJ sing 391 n n O01 C02 XTJ doub 392 n n C16 C17 XTJ sing 393 n n C20 O30 XTJ doub 394 n n C14 C02 XTJ sing 395 n n C02 N03 XTJ sing 396 n n N03 C04 XTJ sing 397 n n C07 C08 XTJ sing 398 n n C07 C06 XTJ sing 399 n n C04 C12 XTJ sing 400 n n C04 C05 XTJ sing 401 n n C08 N09 XTJ sing 402 n n C12 O13 XTJ sing 403 n n C06 C05 XTJ sing 404 n n C06 C10 XTJ sing 405 n n N09 C10 XTJ sing 406 n n C10 O11 XTJ doub 407 n n C15 H151 XTJ sing 408 n n C15 H152 XTJ sing 409 n n C17 H171 XTJ sing 410 n n C17 H172 XTJ sing 411 n n C22 H222 XTJ sing 412 n n C22 H221 XTJ sing 413 n n C24 H241 XTJ sing 414 n n C26 H261 XTJ sing 415 n n C04 H041 XTJ sing 416 n n C05 H052 XTJ sing 417 n n C05 H051 XTJ sing 418 n n C06 H061 XTJ sing 419 n n C07 H072 XTJ sing 420 n n C07 H071 XTJ sing 421 n n C08 H082 XTJ sing 422 n n C08 H081 XTJ sing 423 n n C12 H121 XTJ sing 424 n n C14 H141 XTJ sing 425 n n C16 H161 XTJ sing 426 n n C18 H181 XTJ sing 427 n n C18 H182 XTJ sing 428 n n C25 H251 XTJ sing 429 n n C29 H291 XTJ sing 430 n n N03 H031 XTJ sing 431 n n N09 H091 XTJ sing 432 n n N19 H191 XTJ sing 433 n n C12 H1 XTJ sing 434 n n O13 H2 XTJ sing 435 n n # _atom_sites.entry_id 7LCO _atom_sites.fract_transf_matrix[1][1] 0.008752 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001852 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XTJ A 1 401 401 XTJ LIG . C 3 HOH A 1 501 49 HOH HOH . C 3 HOH A 2 502 64 HOH HOH . C 3 HOH A 3 503 25 HOH HOH . C 3 HOH A 4 504 16 HOH HOH . C 3 HOH A 5 505 19 HOH HOH . C 3 HOH A 6 506 61 HOH HOH . C 3 HOH A 7 507 46 HOH HOH . C 3 HOH A 8 508 83 HOH HOH . C 3 HOH A 9 509 84 HOH HOH . C 3 HOH A 10 510 13 HOH HOH . C 3 HOH A 11 511 9 HOH HOH . C 3 HOH A 12 512 5 HOH HOH . C 3 HOH A 13 513 87 HOH HOH . C 3 HOH A 14 514 15 HOH HOH . C 3 HOH A 15 515 51 HOH HOH . C 3 HOH A 16 516 11 HOH HOH . C 3 HOH A 17 517 42 HOH HOH . C 3 HOH A 18 518 97 HOH HOH . C 3 HOH A 19 519 35 HOH HOH . C 3 HOH A 20 520 7 HOH HOH . C 3 HOH A 21 521 82 HOH HOH . C 3 HOH A 22 522 79 HOH HOH . C 3 HOH A 23 523 31 HOH HOH . C 3 HOH A 24 524 63 HOH HOH . C 3 HOH A 25 525 24 HOH HOH . C 3 HOH A 26 526 33 HOH HOH . C 3 HOH A 27 527 2 HOH HOH . C 3 HOH A 28 528 80 HOH HOH . C 3 HOH A 29 529 6 HOH HOH . C 3 HOH A 30 530 4 HOH HOH . C 3 HOH A 31 531 17 HOH HOH . C 3 HOH A 32 532 8 HOH HOH . C 3 HOH A 33 533 37 HOH HOH . C 3 HOH A 34 534 47 HOH HOH . C 3 HOH A 35 535 3 HOH HOH . C 3 HOH A 36 536 23 HOH HOH . C 3 HOH A 37 537 41 HOH HOH . C 3 HOH A 38 538 68 HOH HOH . C 3 HOH A 39 539 69 HOH HOH . C 3 HOH A 40 540 48 HOH HOH . C 3 HOH A 41 541 71 HOH HOH . C 3 HOH A 42 542 54 HOH HOH . C 3 HOH A 43 543 58 HOH HOH . C 3 HOH A 44 544 55 HOH HOH . C 3 HOH A 45 545 93 HOH HOH . C 3 HOH A 46 546 28 HOH HOH . C 3 HOH A 47 547 26 HOH HOH . C 3 HOH A 48 548 45 HOH HOH . C 3 HOH A 49 549 66 HOH HOH . C 3 HOH A 50 550 39 HOH HOH . C 3 HOH A 51 551 96 HOH HOH . C 3 HOH A 52 552 27 HOH HOH . C 3 HOH A 53 553 34 HOH HOH . C 3 HOH A 54 554 57 HOH HOH . C 3 HOH A 55 555 70 HOH HOH . C 3 HOH A 56 556 38 HOH HOH . C 3 HOH A 57 557 60 HOH HOH . C 3 HOH A 58 558 1 HOH HOH . C 3 HOH A 59 559 29 HOH HOH . C 3 HOH A 60 560 20 HOH HOH . C 3 HOH A 61 561 92 HOH HOH . C 3 HOH A 62 562 89 HOH HOH . C 3 HOH A 63 563 21 HOH HOH . C 3 HOH A 64 564 22 HOH HOH . C 3 HOH A 65 565 94 HOH HOH . C 3 HOH A 66 566 30 HOH HOH . C 3 HOH A 67 567 40 HOH HOH . C 3 HOH A 68 568 14 HOH HOH . C 3 HOH A 69 569 91 HOH HOH . C 3 HOH A 70 570 81 HOH HOH . C 3 HOH A 71 571 44 HOH HOH . C 3 HOH A 72 572 12 HOH HOH . C 3 HOH A 73 573 36 HOH HOH . C 3 HOH A 74 574 78 HOH HOH . C 3 HOH A 75 575 52 HOH HOH . C 3 HOH A 76 576 32 HOH HOH . C 3 HOH A 77 577 86 HOH HOH . C 3 HOH A 78 578 75 HOH HOH . C 3 HOH A 79 579 88 HOH HOH . C 3 HOH A 80 580 50 HOH HOH . C 3 HOH A 81 581 74 HOH HOH . C 3 HOH A 82 582 10 HOH HOH . C 3 HOH A 83 583 85 HOH HOH . C 3 HOH A 84 584 62 HOH HOH . C 3 HOH A 85 585 73 HOH HOH . C 3 HOH A 86 586 43 HOH HOH . C 3 HOH A 87 587 95 HOH HOH . C 3 HOH A 88 588 18 HOH HOH . C 3 HOH A 89 589 77 HOH HOH . C 3 HOH A 90 590 53 HOH HOH . C 3 HOH A 91 591 72 HOH HOH . C 3 HOH A 92 592 76 HOH HOH . C 3 HOH A 93 593 67 HOH HOH . C 3 HOH A 94 594 56 HOH HOH . C 3 HOH A 95 595 90 HOH HOH . C 3 HOH A 96 596 65 HOH HOH . C 3 HOH A 97 597 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 XTJ . . . B 2 -11.548 15.306 4.303 1 35.11 ? C10 XTJ 401 A 1 HETATM 2 C C15 XTJ . . . B 2 -16.321 12.748 -0.753 1 44.45 ? C15 XTJ 401 A 1 HETATM 3 C C17 XTJ . . . B 2 -18.695 13.315 0.122 1 35.15 ? C17 XTJ 401 A 1 HETATM 4 C C20 XTJ . . . B 2 -14.94 16.165 0.065 1 41.39 ? C20 XTJ 401 A 1 HETATM 5 C C22 XTJ . . . B 2 -14.455 18.522 -0.07 1 41.27 ? C22 XTJ 401 A 1 HETATM 6 C C24 XTJ . . . B 2 -14.979 20.946 -0.194 1 52.35 ? C24 XTJ 401 A 1 HETATM 7 C C26 XTJ . . . B 2 -16.465 22.052 -1.826 1 57.49 ? C26 XTJ 401 A 1 HETATM 8 C C02 XTJ . . . B 2 -14.275 13.195 0.588 1 38.18 ? C02 XTJ 401 A 1 HETATM 9 C C04 XTJ . . . B 2 -12.688 12.136 2.243 1 38.43 ? C04 XTJ 401 A 1 HETATM 10 C C05 XTJ . . . B 2 -12.205 12.886 3.509 1 36.41 ? C05 XTJ 401 A 1 HETATM 11 C C06 XTJ . . . B 2 -11.948 14.387 3.177 1 34.32 ? C06 XTJ 401 A 1 HETATM 12 C C07 XTJ . . . B 2 -10.785 14.464 2.201 1 41.31 ? C07 XTJ 401 A 1 HETATM 13 C C08 XTJ . . . B 2 -10.132 15.854 2.446 1 37.08 ? C08 XTJ 401 A 1 HETATM 14 C C12 XTJ . . . B 2 -12.713 10.617 2.473 1 32.5 ? C12 XTJ 401 A 1 HETATM 15 C C14 XTJ . . . B 2 -15.65 13.75 0.149 1 34.47 ? C14 XTJ 401 A 1 HETATM 16 C C16 XTJ . . . B 2 -17.58 12.277 0.01 1 43.97 ? C16 XTJ 401 A 1 HETATM 17 C C18 XTJ . . . B 2 -18.834 12.138 -0.864 1 39.93 ? C18 XTJ 401 A 1 HETATM 18 C C23 XTJ . . . B 2 -15.189 19.729 -0.702 1 54.44 ? C23 XTJ 401 A 1 HETATM 19 C C25 XTJ . . . B 2 -15.656 22.192 -0.791 1 55.12 ? C25 XTJ 401 A 1 HETATM 20 C C27 XTJ . . . B 2 -16.724 20.663 -2.421 1 57.97 ? C27 XTJ 401 A 1 HETATM 21 C C29 XTJ . . . B 2 -16.138 19.576 -1.915 1 51.47 ? C29 XTJ 401 A 1 HETATM 22 F F28 XTJ . . . B 2 -17.573 20.587 -3.507 1 63.18 ? F28 XTJ 401 A 1 HETATM 23 N N03 XTJ . . . B 2 -14.038 12.625 1.905 1 33.09 ? N03 XTJ 401 A 1 HETATM 24 N N09 XTJ . . . B 2 -10.47 16.196 3.864 1 38.24 ? N09 XTJ 401 A 1 HETATM 25 N N19 XTJ . . . B 2 -15.423 14.969 -0.602 1 37.27 ? N19 XTJ 401 A 1 HETATM 26 O O01 XTJ . . . B 2 -13.359 13.231 -0.15 1 34.72 ? O01 XTJ 401 A 1 HETATM 27 O O11 XTJ . . . B 2 -12.018 15.365 5.374 1 34.13 ? O11 XTJ 401 A 1 HETATM 28 O O13 XTJ . . . B 2 -11.693 10.091 2.889 1 42.74 ? O13 XTJ 401 A 1 HETATM 29 O O21 XTJ . . . B 2 -14.821 17.32 -0.731 1 41.98 ? O21 XTJ 401 A 1 HETATM 30 O O30 XTJ . . . B 2 -14.654 16.148 1.239 1 40.39 ? O30 XTJ 401 A 1 HETATM 31 H H151 XTJ . . . B 2 -16.571 13.163 -1.593 1 53.37 ? H151 XTJ 401 A 1 HETATM 32 H H152 XTJ . . . B 2 -15.73 11.999 -0.925 1 53.37 ? H152 XTJ 401 A 1 HETATM 33 H H171 XTJ . . . B 2 -19.241 13.259 0.921 1 42.2 ? H171 XTJ 401 A 1 HETATM 34 H H172 XTJ . . . B 2 -18.505 14.178 -0.28 1 42.2 ? H172 XTJ 401 A 1 HETATM 35 H H222 XTJ . . . B 2 -13.497 18.652 -0.151 1 49.55 ? H222 XTJ 401 A 1 HETATM 36 H H221 XTJ . . . B 2 -14.694 18.457 0.868 1 49.55 ? H221 XTJ 401 A 1 HETATM 37 H H241 XTJ . . . B 2 -14.411 21.043 0.536 1 62.85 ? H241 XTJ 401 A 1 HETATM 38 H H261 XTJ . . . B 2 -16.879 22.798 -2.195 1 69.01 ? H261 XTJ 401 A 1 HETATM 39 H H041 XTJ . . . B 2 -12.074 12.307 1.511 1 46.15 ? H041 XTJ 401 A 1 HETATM 40 H H052 XTJ . . . B 2 -11.383 12.482 3.827 1 43.72 ? H052 XTJ 401 A 1 HETATM 41 H H051 XTJ . . . B 2 -12.885 12.821 4.198 1 43.72 ? H051 XTJ 401 A 1 HETATM 42 H H061 XTJ . . . B 2 -12.814 14.687 2.861 1 41.22 ? H061 XTJ 401 A 1 HETATM 43 H H072 XTJ . . . B 2 -10.147 13.757 2.384 1 49.59 ? H072 XTJ 401 A 1 HETATM 44 H H071 XTJ . . . B 2 -11.109 14.402 1.289 1 49.59 ? H071 XTJ 401 A 1 HETATM 45 H H082 XTJ . . . B 2 -10.506 16.515 1.841 1 44.52 ? H082 XTJ 401 A 1 HETATM 46 H H081 XTJ . . . B 2 -9.171 15.801 2.331 1 44.52 ? H081 XTJ 401 A 1 HETATM 47 H H141 XTJ . . . B 2 -16.208 13.92 0.924 1 41.39 ? H141 XTJ 401 A 1 HETATM 48 H H161 XTJ . . . B 2 -17.508 11.661 0.756 1 52.79 ? H161 XTJ 401 A 1 HETATM 49 H H181 XTJ . . . B 2 -19.455 11.441 -0.6 1 47.95 ? H181 XTJ 401 A 1 HETATM 50 H H182 XTJ . . . B 2 -18.719 12.36 -1.801 1 47.95 ? H182 XTJ 401 A 1 HETATM 51 H H251 XTJ . . . B 2 -15.497 23.034 -0.428 1 66.17 ? H251 XTJ 401 A 1 HETATM 52 H H291 XTJ . . . B 2 -16.298 18.738 -2.286 1 61.79 ? H291 XTJ 401 A 1 HETATM 53 H H031 XTJ . . . B 2 -14.676 12.574 2.48 1 39.73 ? H031 XTJ 401 A 1 HETATM 54 H H091 XTJ . . . B 2 -10.096 16.808 4.339 1 45.91 ? H091 XTJ 401 A 1 HETATM 55 H H191 XTJ . . . B 2 -15.575 14.985 -1.448 1 44.75 ? H191 XTJ 401 A 1 HETATM 56 H H1 XTJ . . . B 2 -13.477 10.116 2.303 1 39.02 ? H1 XTJ 401 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 56 #