data_7LCP # _model_server_result.job_id -qyoZ7PcTlZ72UwrRKqlJQ _model_server_result.datetime_utc '2025-07-01 11:32:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lcp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7LCP # _exptl.entry_id 7LCP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.338 _cell.angle_gamma 90 _cell.entry_id 7LCP _cell.length_a 108.28 _cell.length_b 82.19 _cell.length_c 54.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 B C21 UED . A UED 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? metalc ? metalc1 D CA CA . A CA 403 1_555 G O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? # _chem_comp.formula 'C21 H31 N3 O5' _chem_comp.formula_weight 405.488 _chem_comp.id UED _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'GC373 bound form, GC376 bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C14 UED sing 367 n n C3 C2 UED doub 368 n y C3 C4 UED sing 369 n y C2 C1 UED sing 370 n y C14 C13 UED sing 371 n n C14 C15 UED sing 372 n n C13 C12 UED sing 373 n n C4 C5 UED doub 374 n y O8 C7 UED sing 375 n n O8 C9 UED sing 376 n n N11 C12 UED sing 377 n n N11 C9 UED sing 378 n n C1 C7 UED sing 379 n n C1 C6 UED doub 380 n y O18 C17 UED doub 381 n n C5 C6 UED sing 382 n y C12 C17 UED sing 383 n n C9 O10 UED doub 384 n n C17 N19 UED sing 385 n n C26 C27 UED sing 386 n n C26 C25 UED sing 387 n n N19 C20 UED sing 388 n n C20 C21 UED sing 389 n n C20 C24 UED sing 390 n n C27 N28 UED sing 391 n n O22 C21 UED sing 392 n n C25 C24 UED sing 393 n n C25 C29 UED sing 394 n n N28 C29 UED sing 395 n n C29 O30 UED doub 396 n n C7 H1 UED sing 397 n n C7 H2 UED sing 398 n n C2 H3 UED sing 399 n n C3 H4 UED sing 400 n n C4 H5 UED sing 401 n n C5 H6 UED sing 402 n n C6 H7 UED sing 403 n n N11 H8 UED sing 404 n n C12 H9 UED sing 405 n n C13 H10 UED sing 406 n n C13 H11 UED sing 407 n n C14 H12 UED sing 408 n n C15 H13 UED sing 409 n n C15 H14 UED sing 410 n n C15 H15 UED sing 411 n n C16 H16 UED sing 412 n n C16 H17 UED sing 413 n n C16 H18 UED sing 414 n n N19 H19 UED sing 415 n n C20 H20 UED sing 416 n n C24 H21 UED sing 417 n n C24 H22 UED sing 418 n n C25 H23 UED sing 419 n n C26 H24 UED sing 420 n n C26 H25 UED sing 421 n n C27 H26 UED sing 422 n n C27 H27 UED sing 423 n n N28 H28 UED sing 424 n n C21 H29 UED sing 425 n n C21 H30 UED sing 426 n n O22 H31 UED sing 427 n n # _atom_sites.entry_id 7LCP _atom_sites.fract_transf_matrix[1][1] 0.009235 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002361 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UED A 1 401 306 UED UED . C 3 EDO A 1 402 501 EDO EDO . D 4 CA A 1 403 2 CA CA . E 4 CA A 1 404 3 CA CA . F 4 CA A 1 405 5 CA CA . G 5 HOH A 1 501 21 HOH HOH . G 5 HOH A 2 502 53 HOH HOH . G 5 HOH A 3 503 35 HOH HOH . G 5 HOH A 4 504 24 HOH HOH . G 5 HOH A 5 505 7 HOH HOH . G 5 HOH A 6 506 27 HOH HOH . G 5 HOH A 7 507 16 HOH HOH . G 5 HOH A 8 508 29 HOH HOH . G 5 HOH A 9 509 18 HOH HOH . G 5 HOH A 10 510 50 HOH HOH . G 5 HOH A 11 511 33 HOH HOH . G 5 HOH A 12 512 63 HOH HOH . G 5 HOH A 13 513 8 HOH HOH . G 5 HOH A 14 514 11 HOH HOH . G 5 HOH A 15 515 10 HOH HOH . G 5 HOH A 16 516 15 HOH HOH . G 5 HOH A 17 517 2 HOH HOH . G 5 HOH A 18 518 19 HOH HOH . G 5 HOH A 19 519 45 HOH HOH . G 5 HOH A 20 520 39 HOH HOH . G 5 HOH A 21 521 31 HOH HOH . G 5 HOH A 22 522 23 HOH HOH . G 5 HOH A 23 523 51 HOH HOH . G 5 HOH A 24 524 61 HOH HOH . G 5 HOH A 25 525 6 HOH HOH . G 5 HOH A 26 526 5 HOH HOH . G 5 HOH A 27 527 44 HOH HOH . G 5 HOH A 28 528 4 HOH HOH . G 5 HOH A 29 529 37 HOH HOH . G 5 HOH A 30 530 9 HOH HOH . G 5 HOH A 31 531 57 HOH HOH . G 5 HOH A 32 532 1 HOH HOH . G 5 HOH A 33 533 32 HOH HOH . G 5 HOH A 34 534 12 HOH HOH . G 5 HOH A 35 535 14 HOH HOH . G 5 HOH A 36 536 40 HOH HOH . G 5 HOH A 37 537 3 HOH HOH . G 5 HOH A 38 538 13 HOH HOH . G 5 HOH A 39 539 47 HOH HOH . G 5 HOH A 40 540 34 HOH HOH . G 5 HOH A 41 541 17 HOH HOH . G 5 HOH A 42 542 41 HOH HOH . G 5 HOH A 43 543 43 HOH HOH . G 5 HOH A 44 544 26 HOH HOH . G 5 HOH A 45 545 56 HOH HOH . G 5 HOH A 46 546 64 HOH HOH . G 5 HOH A 47 547 42 HOH HOH . G 5 HOH A 48 548 36 HOH HOH . G 5 HOH A 49 549 20 HOH HOH . G 5 HOH A 50 550 22 HOH HOH . G 5 HOH A 51 551 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 UED . . . B 2 -23.947 -35.93 3.285 1 71.35 ? C7 UED 401 A 1 HETATM 2 O O8 UED . . . B 2 -24.819 -36.932 3.809 1 67.97 ? O8 UED 401 A 1 HETATM 3 C C9 UED . . . B 2 -24.1 -38.041 4.335 1 67.45 ? C9 UED 401 A 1 HETATM 4 O O10 UED . . . B 2 -22.892 -38.029 4.398 1 60.38 ? O10 UED 401 A 1 HETATM 5 C C1 UED . . . B 2 -23.813 -36.019 1.736 1 72.18 ? C1 UED 401 A 1 HETATM 6 C C2 UED . . . B 2 -24.26 -37.142 1.042 1 73.24 ? C2 UED 401 A 1 HETATM 7 C C3 UED . . . B 2 -24.145 -37.207 -0.347 1 76.66 ? C3 UED 401 A 1 HETATM 8 C C4 UED . . . B 2 -23.575 -36.145 -1.043 1 76.62 ? C4 UED 401 A 1 HETATM 9 C C5 UED . . . B 2 -23.133 -35.024 -0.355 1 72.35 ? C5 UED 401 A 1 HETATM 10 C C6 UED . . . B 2 -23.247 -34.963 1.032 1 71.46 ? C6 UED 401 A 1 HETATM 11 N N11 UED . . . B 2 -24.835 -39.22 4.78 1 61.49 ? N11 UED 401 A 1 HETATM 12 C C12 UED . . . B 2 -24.102 -40.437 5.063 1 60.87 ? C12 UED 401 A 1 HETATM 13 C C17 UED . . . B 2 -23.373 -40.88 3.781 1 63.21 ? C17 UED 401 A 1 HETATM 14 O O18 UED . . . B 2 -23.907 -40.789 2.72 1 63.76 ? O18 UED 401 A 1 HETATM 15 C C13 UED . . . B 2 -25.026 -41.57 5.512 1 65.93 ? C13 UED 401 A 1 HETATM 16 C C14 UED . . . B 2 -25.726 -41.171 6.828 1 68.04 ? C14 UED 401 A 1 HETATM 17 C C15 UED . . . B 2 -24.654 -40.903 7.908 1 65.14 ? C15 UED 401 A 1 HETATM 18 C C16 UED . . . B 2 -26.691 -42.287 7.252 1 71.97 ? C16 UED 401 A 1 HETATM 19 N N19 UED . . . B 2 -22.013 -41.421 3.885 1 55.59 ? N19 UED 401 A 1 HETATM 20 C C20 UED . . . B 2 -21.319 -41.858 2.671 1 58.58 ? C20 UED 401 A 1 HETATM 21 C C21 UED . . . B 2 -20.957 -43.323 2.832 1 57.52 ? C21 UED 401 A 1 HETATM 22 O O22 UED . . . B 2 -20.807 -43.885 1.556 1 68.21 ? O22 UED 401 A 1 HETATM 23 C C24 UED . . . B 2 -20.025 -41.037 2.484 1 53.44 ? C24 UED 401 A 1 HETATM 24 C C25 UED . . . B 2 -20.418 -39.6 2.104 1 57.2 ? C25 UED 401 A 1 HETATM 25 C C26 UED . . . B 2 -21.028 -39.618 0.859 1 63.26 ? C26 UED 401 A 1 HETATM 26 C C27 UED . . . B 2 -20.375 -38.425 0.023 1 62.58 ? C27 UED 401 A 1 HETATM 27 N N28 UED . . . B 2 -19.081 -38.067 0.798 1 58.71 ? N28 UED 401 A 1 HETATM 28 C C29 UED . . . B 2 -19.073 -38.71 1.984 1 57.91 ? C29 UED 401 A 1 HETATM 29 O O30 UED . . . B 2 -18.233 -38.644 2.83 1 54.26 ? O30 UED 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 108 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 497 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #