data_7LCP # _model_server_result.job_id 5YyqIinkUCaZx5JS4M_53g _model_server_result.datetime_utc '2025-01-28 03:51:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lcp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7LCP # _exptl.entry_id 7LCP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.338 _cell.angle_gamma 90 _cell.entry_id 7LCP _cell.length_a 108.28 _cell.length_b 82.19 _cell.length_c 54.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 B C21 UED . A UED 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? metalc ? metalc1 D CA CA . A CA 403 1_555 G O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7LCP _atom_sites.fract_transf_matrix[1][1] 0.009235 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002361 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UED A 1 401 306 UED UED . C 3 EDO A 1 402 501 EDO EDO . D 4 CA A 1 403 2 CA CA . E 4 CA A 1 404 3 CA CA . F 4 CA A 1 405 5 CA CA . G 5 HOH A 1 501 21 HOH HOH . G 5 HOH A 2 502 53 HOH HOH . G 5 HOH A 3 503 35 HOH HOH . G 5 HOH A 4 504 24 HOH HOH . G 5 HOH A 5 505 7 HOH HOH . G 5 HOH A 6 506 27 HOH HOH . G 5 HOH A 7 507 16 HOH HOH . G 5 HOH A 8 508 29 HOH HOH . G 5 HOH A 9 509 18 HOH HOH . G 5 HOH A 10 510 50 HOH HOH . G 5 HOH A 11 511 33 HOH HOH . G 5 HOH A 12 512 63 HOH HOH . G 5 HOH A 13 513 8 HOH HOH . G 5 HOH A 14 514 11 HOH HOH . G 5 HOH A 15 515 10 HOH HOH . G 5 HOH A 16 516 15 HOH HOH . G 5 HOH A 17 517 2 HOH HOH . G 5 HOH A 18 518 19 HOH HOH . G 5 HOH A 19 519 45 HOH HOH . G 5 HOH A 20 520 39 HOH HOH . G 5 HOH A 21 521 31 HOH HOH . G 5 HOH A 22 522 23 HOH HOH . G 5 HOH A 23 523 51 HOH HOH . G 5 HOH A 24 524 61 HOH HOH . G 5 HOH A 25 525 6 HOH HOH . G 5 HOH A 26 526 5 HOH HOH . G 5 HOH A 27 527 44 HOH HOH . G 5 HOH A 28 528 4 HOH HOH . G 5 HOH A 29 529 37 HOH HOH . G 5 HOH A 30 530 9 HOH HOH . G 5 HOH A 31 531 57 HOH HOH . G 5 HOH A 32 532 1 HOH HOH . G 5 HOH A 33 533 32 HOH HOH . G 5 HOH A 34 534 12 HOH HOH . G 5 HOH A 35 535 14 HOH HOH . G 5 HOH A 36 536 40 HOH HOH . G 5 HOH A 37 537 3 HOH HOH . G 5 HOH A 38 538 13 HOH HOH . G 5 HOH A 39 539 47 HOH HOH . G 5 HOH A 40 540 34 HOH HOH . G 5 HOH A 41 541 17 HOH HOH . G 5 HOH A 42 542 41 HOH HOH . G 5 HOH A 43 543 43 HOH HOH . G 5 HOH A 44 544 26 HOH HOH . G 5 HOH A 45 545 56 HOH HOH . G 5 HOH A 46 546 64 HOH HOH . G 5 HOH A 47 547 42 HOH HOH . G 5 HOH A 48 548 36 HOH HOH . G 5 HOH A 49 549 20 HOH HOH . G 5 HOH A 50 550 22 HOH HOH . G 5 HOH A 51 551 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 5.298 -42.261 7.398 1 77.6 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . C 3 5.433 -42.337 5.983 1 76.99 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . C 3 3.854 -41.864 7.737 1 76.08 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . C 3 3.665 -40.451 7.587 1 75.2 ? O2 EDO 402 A 1 HETATM 5 H H11 EDO . . . C 3 5.993 -41.521 7.801 1 93.15 ? H11 EDO 402 A 1 HETATM 6 H H12 EDO . . . C 3 5.537 -43.226 7.85 1 93.15 ? H12 EDO 402 A 1 HETATM 7 H HO1 EDO . . . C 3 6.337 -42.599 5.759 1 92.42 ? HO1 EDO 402 A 1 HETATM 8 H H21 EDO . . . C 3 3.628 -42.155 8.765 1 91.33 ? H21 EDO 402 A 1 HETATM 9 H H22 EDO . . . C 3 3.166 -42.397 7.078 1 91.33 ? H22 EDO 402 A 1 HETATM 10 H HO2 EDO . . . C 3 2.748 -40.225 7.793 1 90.27 ? HO2 EDO 402 A 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #