data_7LCQ # _model_server_result.job_id 3TNyKjIAdOgp-BvQ1QDlqQ _model_server_result.datetime_utc '2025-07-03 19:00:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lcq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 7LCQ # _exptl.entry_id 7LCQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.488 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.119 _cell.angle_gamma 90 _cell.entry_id 7LCQ _cell.length_a 108.27 _cell.length_b 82.05 _cell.length_c 53.82 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LCQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C21 _struct_conn.ptnr2_label_comp_id UED _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id UED _struct_conn.ptnr2_auth_seq_id 603 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.759 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H31 N3 O5' _chem_comp.formula_weight 405.488 _chem_comp.id UED _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'GC373 bound form, GC376 bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C14 UED sing 367 n n C3 C2 UED doub 368 n y C3 C4 UED sing 369 n y C2 C1 UED sing 370 n y C14 C13 UED sing 371 n n C14 C15 UED sing 372 n n C13 C12 UED sing 373 n n C4 C5 UED doub 374 n y O8 C7 UED sing 375 n n O8 C9 UED sing 376 n n N11 C12 UED sing 377 n n N11 C9 UED sing 378 n n C1 C7 UED sing 379 n n C1 C6 UED doub 380 n y O18 C17 UED doub 381 n n C5 C6 UED sing 382 n y C12 C17 UED sing 383 n n C9 O10 UED doub 384 n n C17 N19 UED sing 385 n n C26 C27 UED sing 386 n n C26 C25 UED sing 387 n n N19 C20 UED sing 388 n n C20 C21 UED sing 389 n n C20 C24 UED sing 390 n n C27 N28 UED sing 391 n n O22 C21 UED sing 392 n n C25 C24 UED sing 393 n n C25 C29 UED sing 394 n n N28 C29 UED sing 395 n n C29 O30 UED doub 396 n n C7 H1 UED sing 397 n n C7 H2 UED sing 398 n n C2 H3 UED sing 399 n n C3 H4 UED sing 400 n n C4 H5 UED sing 401 n n C5 H6 UED sing 402 n n C6 H7 UED sing 403 n n N11 H8 UED sing 404 n n C12 H9 UED sing 405 n n C13 H10 UED sing 406 n n C13 H11 UED sing 407 n n C14 H12 UED sing 408 n n C15 H13 UED sing 409 n n C15 H14 UED sing 410 n n C15 H15 UED sing 411 n n C16 H16 UED sing 412 n n C16 H17 UED sing 413 n n C16 H18 UED sing 414 n n N19 H19 UED sing 415 n n C20 H20 UED sing 416 n n C24 H21 UED sing 417 n n C24 H22 UED sing 418 n n C25 H23 UED sing 419 n n C26 H24 UED sing 420 n n C26 H25 UED sing 421 n n C27 H26 UED sing 422 n n C27 H27 UED sing 423 n n N28 H28 UED sing 424 n n C21 H29 UED sing 425 n n C21 H30 UED sing 426 n n O22 H31 UED sing 427 n n # _atom_sites.entry_id 7LCQ _atom_sites.fract_transf_matrix[1][1] 0.009236 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002323 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 601 601 EDO EDO . C 2 EDO A 1 602 1001 EDO EDO . D 3 UED A 1 603 1 UED K36 . E 4 HOH A 1 701 2 HOH HOH . E 4 HOH A 2 702 3 HOH HOH . E 4 HOH A 3 703 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 UED . . . D 3 -23.817 -35.95 2.973 1 88.61 ? C7 UED 603 A 1 HETATM 2 O O8 UED . . . D 3 -24.71 -36.802 3.692 1 94.75 ? O8 UED 603 A 1 HETATM 3 C C9 UED . . . D 3 -24.121 -37.98 4.235 1 89.35 ? C9 UED 603 A 1 HETATM 4 O O10 UED . . . D 3 -22.963 -38.069 4.472 1 85.33 ? O10 UED 603 A 1 HETATM 5 C C1 UED . . . D 3 -23.844 -36.172 1.435 1 90.52 ? C1 UED 603 A 1 HETATM 6 C C2 UED . . . D 3 -23.042 -35.377 0.614 1 95.08 ? C2 UED 603 A 1 HETATM 7 C C3 UED . . . D 3 -23.048 -35.551 -0.768 1 99.03 ? C3 UED 603 A 1 HETATM 8 C C4 UED . . . D 3 -23.859 -36.521 -1.334 1 108.71 ? C4 UED 603 A 1 HETATM 9 C C5 UED . . . D 3 -24.664 -37.321 -0.524 1 104.64 ? C5 UED 603 A 1 HETATM 10 C C6 UED . . . D 3 -24.65 -37.149 0.857 1 97.59 ? C6 UED 603 A 1 HETATM 11 N N11 UED . . . D 3 -24.933 -39.151 4.484 1 81.5 ? N11 UED 603 A 1 HETATM 12 C C12 UED . . . D 3 -24.255 -40.363 4.901 1 81.82 ? C12 UED 603 A 1 HETATM 13 C C17 UED . . . D 3 -23.438 -40.875 3.684 1 83.84 ? C17 UED 603 A 1 HETATM 14 O O18 UED . . . D 3 -23.857 -40.651 2.593 1 84.53 ? O18 UED 603 A 1 HETATM 15 C C13 UED . . . D 3 -25.183 -41.477 5.249 1 88.03 ? C13 UED 603 A 1 HETATM 16 C C14 UED . . . D 3 -25.011 -41.851 6.721 1 92.33 ? C14 UED 603 A 1 HETATM 17 C C15 UED . . . D 3 -26.363 -42.542 7.093 1 90.43 ? C15 UED 603 A 1 HETATM 18 C C16 UED . . . D 3 -24.94 -40.748 7.787 1 89.9 ? C16 UED 603 A 1 HETATM 19 N N19 UED . . . D 3 -22.186 -41.647 3.799 1 73.88 ? N19 UED 603 A 1 HETATM 20 C C20 UED . . . D 3 -21.429 -42.097 2.585 1 79.02 ? C20 UED 603 A 1 HETATM 21 C C21 UED . . . D 3 -21.196 -43.577 2.86 1 72.84 ? C21 UED 603 A 1 HETATM 22 O O22 UED . . . D 3 -20.718 -44.2 1.705 1 81.06 ? O22 UED 603 A 1 HETATM 23 C C24 UED . . . D 3 -20.133 -41.27 2.351 1 73.81 ? C24 UED 603 A 1 HETATM 24 C C25 UED . . . D 3 -20.504 -39.772 2.012 1 75.05 ? C25 UED 603 A 1 HETATM 25 C C26 UED . . . D 3 -21.336 -39.685 0.711 1 81.2 ? C26 UED 603 A 1 HETATM 26 C C27 UED . . . D 3 -20.89 -38.522 -0.07 1 84.93 ? C27 UED 603 A 1 HETATM 27 N N28 UED . . . D 3 -19.56 -38.117 0.505 1 80.76 ? N28 UED 603 A 1 HETATM 28 C C29 UED . . . D 3 -19.368 -38.915 1.773 1 78.99 ? C29 UED 603 A 1 HETATM 29 O O30 UED . . . D 3 -18.444 -38.795 2.494 1 76.37 ? O30 UED 603 A 1 HETATM 30 H H1 UED . . . D 3 -22.915 -36.115 3.29 1 106.53 ? H1 UED 603 A 1 HETATM 31 H H2 UED . . . D 3 -24.059 -35.029 3.155 1 106.53 ? H2 UED 603 A 1 HETATM 32 H H3 UED . . . D 3 -22.499 -34.724 0.994 1 114.3 ? H3 UED 603 A 1 HETATM 33 H H4 UED . . . D 3 -22.51 -35.018 -1.308 1 119.04 ? H4 UED 603 A 1 HETATM 34 H H5 UED . . . D 3 -23.867 -36.64 -2.257 1 130.65 ? H5 UED 603 A 1 HETATM 35 H H6 UED . . . D 3 -25.21 -37.969 -0.906 1 125.76 ? H6 UED 603 A 1 HETATM 36 H H7 UED . . . D 3 -25.181 -37.69 1.396 1 117.31 ? H7 UED 603 A 1 HETATM 37 H H8 UED . . . D 3 -25.787 -39.129 4.388 1 98 ? H8 UED 603 A 1 HETATM 38 H H9 UED . . . D 3 -23.728 -40.138 5.684 1 98.39 ? H9 UED 603 A 1 HETATM 39 H H10 UED . . . D 3 -26.098 -41.194 5.093 1 105.83 ? H10 UED 603 A 1 HETATM 40 H H11 UED . . . D 3 -24.984 -42.247 4.695 1 105.83 ? H11 UED 603 A 1 HETATM 41 H H12 UED . . . D 3 -24.165 -42.324 6.749 1 110.99 ? H12 UED 603 A 1 HETATM 42 H H13 UED . . . D 3 -27.09 -41.907 6.988 1 108.72 ? H13 UED 603 A 1 HETATM 43 H H14 UED . . . D 3 -26.51 -43.301 6.507 1 108.72 ? H14 UED 603 A 1 HETATM 44 H H15 UED . . . D 3 -26.329 -42.846 8.013 1 108.72 ? H15 UED 603 A 1 HETATM 45 H H16 UED . . . D 3 -25.723 -40.18 7.718 1 108.08 ? H16 UED 603 A 1 HETATM 46 H H17 UED . . . D 3 -24.141 -40.216 7.649 1 108.08 ? H17 UED 603 A 1 HETATM 47 H H18 UED . . . D 3 -24.911 -41.152 8.669 1 108.08 ? H18 UED 603 A 1 HETATM 48 H H19 UED . . . D 3 -21.884 -41.843 4.58 1 88.86 ? H19 UED 603 A 1 HETATM 49 H H20 UED . . . D 3 -21.907 -41.958 1.753 1 95.03 ? H20 UED 603 A 1 HETATM 50 H H21 UED . . . D 3 -19.636 -41.653 1.611 1 88.77 ? H21 UED 603 A 1 HETATM 51 H H22 UED . . . D 3 -19.587 -41.293 3.152 1 88.77 ? H22 UED 603 A 1 HETATM 52 H H23 UED . . . D 3 -20.993 -39.421 2.773 1 90.26 ? H23 UED 603 A 1 HETATM 53 H H24 UED . . . D 3 -22.273 -39.579 0.937 1 97.64 ? H24 UED 603 A 1 HETATM 54 H H25 UED . . . D 3 -21.2 -40.492 0.189 1 97.64 ? H25 UED 603 A 1 HETATM 55 H H26 UED . . . D 3 -21.527 -37.796 0.023 1 102.12 ? H26 UED 603 A 1 HETATM 56 H H27 UED . . . D 3 -20.787 -38.769 -1.003 1 102.12 ? H27 UED 603 A 1 HETATM 57 H H28 UED . . . D 3 -19.013 -37.542 0.174 1 97.11 ? H28 UED 603 A 1 HETATM 58 H H29 UED . . . D 3 -22.031 -43.99 3.127 1 87.6 ? H29 UED 603 A 1 HETATM 59 H H31 UED . . . D 3 -21.343 -44.643 1.337 1 97.47 ? H31 UED 603 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 59 #