data_7LD3 # _model_server_result.job_id DbLz7Rs24c0dcp5xYpYLfw _model_server_result.datetime_utc '2024-10-19 16:26:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ld3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 7LD3 # _exptl.entry_id 7LD3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 267.241 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LD3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LD3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 135 R CYS 80 1_555 B SG CYS 224 R CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 B SG CYS 315 R CYS 260 1_555 B SG CYS 318 R CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7LD3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ADN R 1 401 400 ADN ADN . F 6 XTD R 1 402 501 XTD 521 . G 7 HOH R 1 601 601 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . E 5 89.835 112.768 114.949 1 55.52 ? O5' ADN 401 R 1 HETATM 2 C C5' ADN . . . E 5 90.652 113.882 114.631 1 55.52 ? C5' ADN 401 R 1 HETATM 3 C C4' ADN . . . E 5 89.86 114.975 113.965 1 55.52 ? C4' ADN 401 R 1 HETATM 4 O O4' ADN . . . E 5 88.674 115.231 114.737 1 55.52 ? O4' ADN 401 R 1 HETATM 5 C C3' ADN . . . E 5 90.56 116.32 113.887 1 55.52 ? C3' ADN 401 R 1 HETATM 6 O O3' ADN . . . E 5 91.382 116.439 112.742 1 55.52 ? O3' ADN 401 R 1 HETATM 7 C C2' ADN . . . E 5 89.425 117.342 113.925 1 55.52 ? C2' ADN 401 R 1 HETATM 8 O O2' ADN . . . E 5 89.019 117.702 112.616 1 55.52 ? O2' ADN 401 R 1 HETATM 9 C C1' ADN . . . E 5 88.289 116.575 114.603 1 55.52 ? C1' ADN 401 R 1 HETATM 10 N N9 ADN . . . E 5 87.952 117.106 115.934 1 55.52 ? N9 ADN 401 R 1 HETATM 11 C C8 ADN . . . E 5 88.079 116.461 117.135 1 55.52 ? C8 ADN 401 R 1 HETATM 12 N N7 ADN . . . E 5 87.631 117.144 118.161 1 55.52 ? N7 ADN 401 R 1 HETATM 13 C C5 ADN . . . E 5 87.182 118.327 117.593 1 55.52 ? C5 ADN 401 R 1 HETATM 14 C C6 ADN . . . E 5 86.577 119.472 118.143 1 55.52 ? C6 ADN 401 R 1 HETATM 15 N N6 ADN . . . E 5 86.306 119.618 119.443 1 55.52 ? N6 ADN 401 R 1 HETATM 16 N N1 ADN . . . E 5 86.255 120.477 117.3 1 55.52 ? N1 ADN 401 R 1 HETATM 17 C C2 ADN . . . E 5 86.511 120.333 115.998 1 55.52 ? C2 ADN 401 R 1 HETATM 18 N N3 ADN . . . E 5 87.07 119.299 115.367 1 55.52 ? N3 ADN 401 R 1 HETATM 19 C C4 ADN . . . E 5 87.377 118.321 116.225 1 55.52 ? C4 ADN 401 R 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 19 #