data_7LD4 # _model_server_result.job_id 9DkshR4Fi9R1N_bLHZ_C_A _model_server_result.datetime_utc '2024-10-20 20:19:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ld4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 7LD4 # _exptl.entry_id 7LD4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 267.241 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LD4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LD4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 135 R CYS 80 1_555 D SG CYS 224 R CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf2 D SG CYS 315 R CYS 260 1_555 D SG CYS 318 R CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7LD4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ADN R 1 401 401 ADN ADN . F 6 HOH R 1 501 501 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . E 5 85.439 74.851 81.514 1 66.73 ? O5' ADN 401 R 1 HETATM 2 C C5' ADN . . . E 5 86.728 74.761 80.926 1 66.73 ? C5' ADN 401 R 1 HETATM 3 C C4' ADN . . . E 5 87.532 73.638 81.52 1 66.73 ? C4' ADN 401 R 1 HETATM 4 O O4' ADN . . . E 5 86.886 72.404 81.178 1 66.73 ? O4' ADN 401 R 1 HETATM 5 C C3' ADN . . . E 5 88.947 73.567 80.976 1 66.73 ? C3' ADN 401 R 1 HETATM 6 O O3' ADN . . . E 5 89.868 73.953 81.991 1 66.73 ? O3' ADN 401 R 1 HETATM 7 C C2' ADN . . . E 5 89.177 72.099 80.617 1 66.73 ? C2' ADN 401 R 1 HETATM 8 O O2' ADN . . . E 5 90.181 71.473 81.383 1 66.73 ? O2' ADN 401 R 1 HETATM 9 C C1' ADN . . . E 5 87.826 71.419 80.823 1 66.73 ? C1' ADN 401 R 1 HETATM 10 N N9 ADN . . . E 5 87.315 70.757 79.627 1 66.73 ? N9 ADN 401 R 1 HETATM 11 C C8 ADN . . . E 5 86.434 71.28 78.72 1 66.73 ? C8 ADN 401 R 1 HETATM 12 N N7 ADN . . . E 5 86.157 70.479 77.721 1 66.73 ? N7 ADN 401 R 1 HETATM 13 C C5 ADN . . . E 5 86.918 69.352 77.983 1 66.73 ? C5 ADN 401 R 1 HETATM 14 C C6 ADN . . . E 5 87.115 68.156 77.273 1 66.73 ? C6 ADN 401 R 1 HETATM 15 N N6 ADN . . . E 5 86.463 67.846 76.153 1 66.73 ? N6 ADN 401 R 1 HETATM 16 N N1 ADN . . . E 5 87.997 67.267 77.774 1 66.73 ? N1 ADN 401 R 1 HETATM 17 C C2 ADN . . . E 5 88.627 67.558 78.913 1 66.73 ? C2 ADN 401 R 1 HETATM 18 N N3 ADN . . . E 5 88.517 68.648 79.673 1 66.73 ? N3 ADN 401 R 1 HETATM 19 C C4 ADN . . . E 5 87.643 69.511 79.151 1 66.73 ? C4 ADN 401 R 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 19 #