data_7LDE # _model_server_result.job_id fnMhHE9y5ojVGOOnzLeBQA _model_server_result.datetime_utc '2024-10-19 17:21:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":901}' # _entry.id 7LDE # _exptl.entry_id 7LDE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 409.254 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 T N N ? 9 BA N N ? 9 IA N N ? 9 WA N N # _pdbx_entity_branch.entity_id 8 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 8 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 8 n O NAG 1 O 1 NAG A 1003 NAG 8 n O NAG 2 O 2 NAG A 1004 NAG 8 n P NAG 1 P 1 NAG A 1005 NAG 8 n P NAG 2 P 2 NAG A 1006 NAG 8 n Q NAG 1 Q 1 NAG B 1003 NAG 8 n Q NAG 2 Q 2 NAG B 1004 NAG 8 n R NAG 1 R 1 NAG C 1003 NAG 8 n R NAG 2 R 2 NAG C 1004 NAG 8 n S NAG 1 S 1 NAG D 1003 NAG 8 n S NAG 2 S 2 NAG D 1004 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 75 A CYS 57 1_555 A SG CYS 323 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 732 A CYS 714 1_555 A SG CYS 787 A CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 78 B CYS 57 1_555 B SG CYS 330 B CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 739 B CYS 718 1_555 B SG CYS 794 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 75 C CYS 57 1_555 C SG CYS 323 C CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 C SG CYS 732 C CYS 714 1_555 C SG CYS 787 C CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 D SG CYS 78 D CYS 57 1_555 D SG CYS 330 D CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 D SG CYS 739 D CYS 718 1_555 D SG CYS 794 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 G SG CYS 90 G CYS 90 1_555 G SG CYS 100 G CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf10 H SG CYS 90 H CYS 90 1_555 H SG CYS 100 H CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 63 A ASN 45 1_555 O C1 NAG . O NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 249 A ASN 231 1_555 Y C1 NAG . A NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 257 A ASN 239 1_555 Z C1 NAG . A NAG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 A ND2 ASN 363 A ASN 345 1_555 P C1 NAG . P NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 B ND2 ASN 256 B ASN 235 1_555 Q C1 NAG . Q NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 B ND2 ASN 370 B ASN 349 1_555 CA C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 C ND2 ASN 63 C ASN 45 1_555 R C1 NAG . R NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 C ND2 ASN 249 C ASN 231 1_555 NA C1 NAG . C NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 C ND2 ASN 257 C ASN 239 1_555 OA C1 NAG . C NAG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 C ND2 ASN 363 C ASN 345 1_555 PA C1 NAG . C NAG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale11 D ND2 ASN 256 D ASN 235 1_555 S C1 NAG . S NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale12 D ND2 ASN 370 D ASN 349 1_555 XA C1 NAG . D NAG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale13 O O4 NAG . O NAG 1 1_555 O C1 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale14 P O4 NAG . P NAG 1 1_555 P C1 NAG . P NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale15 Q O4 NAG . Q NAG 1 1_555 Q C1 NAG . Q NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale16 R O4 NAG . R NAG 1 1_555 R C1 NAG . R NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale17 S O4 NAG . S NAG 1 1_555 S C1 NAG . S NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C14 H15 F3 N3 O6 P' _chem_comp.formula_weight 409.254 _chem_comp.id ZK1 _chem_comp.mon_nstd_flag . _chem_comp.name '{[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[[3,4-Dihydro-7-(4-morpholinyl)-2,3-dioxo-6-(trifluorom ethyl)-1(2H)-quinoxalinyl]methyl]phosphonic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAT OAA ZK1 doub 671 n n CAU OAB ZK1 doub 672 n n OAC PBA ZK1 doub 673 n n OAD PBA ZK1 sing 674 n n OAD HOAD ZK1 sing 675 n n PBA OAE ZK1 sing 676 n n OAE HOAE ZK1 sing 677 n n FAF CAZ ZK1 sing 678 n n CAZ FAG ZK1 sing 679 n n CAZ FAH ZK1 sing 680 n n CAR CAI ZK1 doub 681 n y CAI CAW ZK1 sing 682 n y CAI HAI ZK1 sing 683 n n CAS CAJ ZK1 doub 684 n y CAJ CAV ZK1 sing 685 n y CAJ HAJ ZK1 sing 686 n n CAK CAM ZK1 sing 687 n n CAK OAQ ZK1 sing 688 n n CAK HAK ZK1 sing 689 n n CAK HAKA ZK1 sing 690 n n OAQ CAL ZK1 sing 691 n n CAL CAN ZK1 sing 692 n n CAL HAL ZK1 sing 693 n n CAL HALA ZK1 sing 694 n n CAM NAX ZK1 sing 695 n n CAM HAM ZK1 sing 696 n n CAM HAMA ZK1 sing 697 n n NAX CAN ZK1 sing 698 n n CAN HAN ZK1 sing 699 n n CAN HANA ZK1 sing 700 n n PBA CAO ZK1 sing 701 n n NAY CAO ZK1 sing 702 n n CAO HAO ZK1 sing 703 n n CAO HAOA ZK1 sing 704 n n CAV NAP ZK1 sing 705 n n NAP CAT ZK1 sing 706 n n NAP HNAP ZK1 sing 707 n n NAX CAR ZK1 sing 708 n n CAS CAR ZK1 sing 709 n y CAZ CAS ZK1 sing 710 n n CAT CAU ZK1 sing 711 n n NAY CAU ZK1 sing 712 n n CAV CAW ZK1 doub 713 n y CAW NAY ZK1 sing 714 n n # _atom_sites.entry_id 7LDE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code T 9 ZK1 A 1 901 901 ZK1 ZK1 . U 10 R16 A 1 902 902 R16 R16 . V 11 OCT A 1 903 903 OCT OCT . W 12 HP6 A 1 904 905 HP6 HP6 . X 13 D10 A 1 905 907 D10 D10 . Y 14 NAG A 1 906 1002 NAG NAG . Z 14 NAG A 1 907 1007 NAG NAG . AA 12 HP6 A 1 908 503 HP6 HP6 . BA 9 ZK1 B 1 901 901 ZK1 ZK1 . CA 14 NAG B 1 902 1002 NAG NAG . DA 15 D12 B 1 903 904 D12 C14 . EA 16 C14 B 1 904 904 C14 C14 . FA 17 DD9 B 1 905 905 DD9 DD9 . GA 11 OCT B 1 906 906 OCT OCT . HA 17 DD9 B 1 907 907 DD9 DD9 . IA 9 ZK1 C 1 901 901 ZK1 ZK1 . JA 10 R16 C 1 902 902 R16 R16 . KA 11 OCT C 1 903 903 OCT OCT . LA 12 HP6 C 1 904 905 HP6 HP6 . MA 13 D10 C 1 905 907 D10 D10 . NA 14 NAG C 1 906 1002 NAG NAG . OA 14 NAG C 1 907 1005 NAG NAG . PA 14 NAG C 1 908 1006 NAG NAG . QA 12 HP6 C 1 909 503 HP6 HP6 . RA 15 D12 D 1 901 904 D12 C14 . SA 16 C14 D 1 902 904 C14 C14 . TA 17 DD9 D 1 903 905 DD9 DD9 . UA 11 OCT D 1 904 906 OCT OCT . VA 17 DD9 D 1 905 907 DD9 DD9 . WA 9 ZK1 D 1 906 901 ZK1 ZK1 . XA 14 NAG D 1 907 1002 NAG NAG . YA 13 D10 E 1 201 908 D10 D10 . ZA 16 C14 E 1 202 502 C14 C14 . AB 13 D10 F 1 201 908 D10 D10 . BB 16 C14 F 1 202 502 C14 C14 . CB 13 D10 G 1 501 906 D10 D10 . DB 15 D12 G 1 502 902 D12 D12 . EB 15 D12 G 1 503 903 D12 D12 . FB 18 XVD G 1 504 501 XVD LIG . GB 11 OCT G 1 505 504 OCT OCT . HB 16 C14 G 1 506 505 C14 C14 . IB 15 D12 H 1 501 902 D12 D12 . JB 15 D12 H 1 502 903 D12 D12 . KB 13 D10 H 1 503 906 D10 D10 . LB 18 XVD H 1 504 501 XVD LIG . MB 11 OCT H 1 505 504 OCT OCT . NB 16 C14 H 1 506 505 C14 C14 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA ZK1 . . . BA 9 290.833 246.856 248.021 1 73.13 ? OAA ZK1 901 B 1 HETATM 2 O OAB ZK1 . . . BA 9 293.058 246.434 246.387 1 73.13 ? OAB ZK1 901 B 1 HETATM 3 O OAC ZK1 . . . BA 9 294.244 245.998 242.106 1 73.13 ? OAC ZK1 901 B 1 HETATM 4 O OAD ZK1 . . . BA 9 292.839 245.097 243.906 1 73.13 ? OAD ZK1 901 B 1 HETATM 5 O OAE ZK1 . . . BA 9 291.815 246.457 242.128 1 73.13 ? OAE ZK1 901 B 1 HETATM 6 F FAF ZK1 . . . BA 9 287.131 251.696 244.273 1 73.13 ? FAF ZK1 901 B 1 HETATM 7 F FAG ZK1 . . . BA 9 287.618 251.481 242.118 1 73.13 ? FAG ZK1 901 B 1 HETATM 8 F FAH ZK1 . . . BA 9 288.624 253.052 243.356 1 73.13 ? FAH ZK1 901 B 1 HETATM 9 C CAI ZK1 . . . BA 9 291.338 249.651 243.288 1 73.13 ? CAI ZK1 901 B 1 HETATM 10 C CAJ ZK1 . . . BA 9 289.124 250.061 244.93 1 73.13 ? CAJ ZK1 901 B 1 HETATM 11 C CAK ZK1 . . . BA 9 290.997 251.032 239.223 1 73.13 ? CAK ZK1 901 B 1 HETATM 12 C CAL ZK1 . . . BA 9 292.01 252.818 240.358 1 73.13 ? CAL ZK1 901 B 1 HETATM 13 C CAM ZK1 . . . BA 9 290.071 250.704 240.401 1 73.13 ? CAM ZK1 901 B 1 HETATM 14 C CAN ZK1 . . . BA 9 291.168 252.6 241.623 1 73.13 ? CAN ZK1 901 B 1 HETATM 15 C CAO ZK1 . . . BA 9 293.353 247.809 244.009 1 73.13 ? CAO ZK1 901 B 1 HETATM 16 N NAP ZK1 . . . BA 9 290.01 248.442 246.466 1 73.13 ? NAP ZK1 901 B 1 HETATM 17 O OAQ ZK1 . . . BA 9 292.213 251.625 239.643 1 73.13 ? OAQ ZK1 901 B 1 HETATM 18 C CAR ZK1 . . . BA 9 290.353 250.569 242.909 1 73.13 ? CAR ZK1 901 B 1 HETATM 19 C CAS ZK1 . . . BA 9 289.242 250.775 243.732 1 73.13 ? CAS ZK1 901 B 1 HETATM 20 C CAT ZK1 . . . BA 9 290.958 247.563 246.827 1 73.13 ? CAT ZK1 901 B 1 HETATM 21 C CAU ZK1 . . . BA 9 292.067 247.353 246.01 1 73.13 ? CAU ZK1 901 B 1 HETATM 22 C CAV ZK1 . . . BA 9 290.129 249.127 245.313 1 73.13 ? CAV ZK1 901 B 1 HETATM 23 C CAW ZK1 . . . BA 9 291.218 248.926 244.503 1 73.13 ? CAW ZK1 901 B 1 HETATM 24 N NAX ZK1 . . . BA 9 290.523 251.297 241.638 1 73.13 ? NAX ZK1 901 B 1 HETATM 25 N NAY ZK1 . . . BA 9 292.18 248.03 244.877 1 73.13 ? NAY ZK1 901 B 1 HETATM 26 C CAZ ZK1 . . . BA 9 288.126 251.779 243.356 1 73.13 ? CAZ ZK1 901 B 1 HETATM 27 P PBA ZK1 . . . BA 9 293.047 246.262 242.989 1 73.13 ? PBA ZK1 901 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #