data_7LDQ # _model_server_result.job_id mG8G00aPErsMKDNGycre-A _model_server_result.datetime_utc '2024-11-28 19:50:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ldq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 7LDQ # _exptl.entry_id 7LDQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.831 _cell.angle_gamma 90 _cell.entry_id 7LDQ _cell.length_a 53.1 _cell.length_b 84.838 _cell.length_c 53.977 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N THR 5 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C LYS 68 A LYS 65 1_555 A N MSE 69 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 69 A MSE 66 1_555 A N LYS 70 A LYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C GLY 75 A GLY 72 1_555 A N MSE 76 A MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C MSE 76 A MSE 73 1_555 A N MSE 77 A MSE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale7 A C MSE 77 A MSE 74 1_555 A N ASN 78 A ASN 75 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.337 ? covale ? covale8 A C MSE 77 A MSE 74 1_555 A N ASN 78 A ASN 75 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.336 ? covale ? covale9 A C VAL 105 A VAL 102 1_555 A N MSE 106 A MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C MSE 106 A MSE 103 1_555 A N VAL 107 A VAL 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 A C ASP 130 A ASP 127 1_555 A N MSE 131 A MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C MSE 131 A MSE 128 1_555 A N LYS 132 A LYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale13 A C ASN 154 A ASN 151 1_555 A N MSE 155 A MSE 152 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C ASN 154 A ASN 151 1_555 A N MSE 155 A MSE 152 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.329 ? covale ? covale15 A C MSE 155 A MSE 152 1_555 A N LEU 156 A LEU 153 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale16 A C MSE 155 A MSE 152 1_555 A N LEU 156 A LEU 153 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale17 A C LYS 176 A LYS 173 1_555 A N MSE 177 A MSE 174 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 A C LYS 176 A LYS 173 1_555 A N MSE 177 A MSE 174 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 A C MSE 177 A MSE 174 1_555 A N ASN 178 A ASN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? metalc ? metalc1 A O ALA 3 A ALA 0 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc2 A OE1 GLU 14 A GLU 11 1_555 D CA CA . A CA 303 2_555 ? A ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc3 A OE1 GLU 14 A GLU 11 1_555 D CA CA . A CA 303 2_555 ? B ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc4 A OE2 GLU 14 A GLU 11 1_555 D CA CA . A CA 303 2_555 ? A ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc5 A OE2 GLU 14 A GLU 11 1_555 D CA CA . A CA 303 2_555 ? B ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc6 A OE2 GLU 179 A GLU 176 1_555 D CA CA . A CA 303 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc7 A OE2 GLU 183 A GLU 180 1_555 D CA CA . A CA 303 4_545 ? A ? ? ? ? ? ? ? ? ? ? 2.569 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 144 n n C O2 FMT sing 145 n n C H FMT sing 146 n n O2 HO2 FMT sing 147 n n # _atom_sites.entry_id 7LDQ _atom_sites.fract_transf_matrix[1][1] 0.018832 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009117 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 301 225 FMN FMN . C 3 ACY A 1 302 226 ACY ACY . D 4 CA A 1 303 232 CA CA . E 5 CL A 1 304 233 CL CL . F 6 FMT A 1 305 234 FMT FMT . G 6 FMT A 1 306 235 FMT FMT . H 7 HOH A 1 401 32 HOH HOH . H 7 HOH A 2 402 229 HOH HOH . H 7 HOH A 3 403 241 HOH HOH . H 7 HOH A 4 404 185 HOH HOH . H 7 HOH A 5 405 145 HOH HOH . H 7 HOH A 6 406 115 HOH HOH . H 7 HOH A 7 407 205 HOH HOH . H 7 HOH A 8 408 238 HOH HOH . H 7 HOH A 9 409 215 HOH HOH . H 7 HOH A 10 410 111 HOH HOH . H 7 HOH A 11 411 91 HOH HOH . H 7 HOH A 12 412 127 HOH HOH . H 7 HOH A 13 413 213 HOH HOH . H 7 HOH A 14 414 169 HOH HOH . H 7 HOH A 15 415 95 HOH HOH . H 7 HOH A 16 416 74 HOH HOH . H 7 HOH A 17 417 113 HOH HOH . H 7 HOH A 18 418 142 HOH HOH . H 7 HOH A 19 419 60 HOH HOH . H 7 HOH A 20 420 196 HOH HOH . H 7 HOH A 21 421 139 HOH HOH . H 7 HOH A 22 422 208 HOH HOH . H 7 HOH A 23 423 67 HOH HOH . H 7 HOH A 24 424 222 HOH HOH . H 7 HOH A 25 425 237 HOH HOH . H 7 HOH A 26 426 192 HOH HOH . H 7 HOH A 27 427 82 HOH HOH . H 7 HOH A 28 428 134 HOH HOH . H 7 HOH A 29 429 34 HOH HOH . H 7 HOH A 30 430 45 HOH HOH . H 7 HOH A 31 431 36 HOH HOH . H 7 HOH A 32 432 50 HOH HOH . H 7 HOH A 33 433 124 HOH HOH . H 7 HOH A 34 434 100 HOH HOH . H 7 HOH A 35 435 20 HOH HOH . H 7 HOH A 36 436 41 HOH HOH . H 7 HOH A 37 437 21 HOH HOH . H 7 HOH A 38 438 43 HOH HOH . H 7 HOH A 39 439 86 HOH HOH . H 7 HOH A 40 440 56 HOH HOH . H 7 HOH A 41 441 51 HOH HOH . H 7 HOH A 42 442 33 HOH HOH . H 7 HOH A 43 443 240 HOH HOH . H 7 HOH A 44 444 55 HOH HOH . H 7 HOH A 45 445 118 HOH HOH . H 7 HOH A 46 446 69 HOH HOH . H 7 HOH A 47 447 6 HOH HOH . H 7 HOH A 48 448 218 HOH HOH . H 7 HOH A 49 449 200 HOH HOH . H 7 HOH A 50 450 186 HOH HOH . H 7 HOH A 51 451 81 HOH HOH . H 7 HOH A 52 452 64 HOH HOH . H 7 HOH A 53 453 57 HOH HOH . H 7 HOH A 54 454 123 HOH HOH . H 7 HOH A 55 455 13 HOH HOH . H 7 HOH A 56 456 109 HOH HOH . H 7 HOH A 57 457 8 HOH HOH . H 7 HOH A 58 458 42 HOH HOH . H 7 HOH A 59 459 94 HOH HOH . H 7 HOH A 60 460 184 HOH HOH . H 7 HOH A 61 461 156 HOH HOH . H 7 HOH A 62 462 26 HOH HOH . H 7 HOH A 63 463 173 HOH HOH . H 7 HOH A 64 464 76 HOH HOH . H 7 HOH A 65 465 14 HOH HOH . H 7 HOH A 66 466 35 HOH HOH . H 7 HOH A 67 467 48 HOH HOH . H 7 HOH A 68 468 96 HOH HOH . H 7 HOH A 69 469 151 HOH HOH . H 7 HOH A 70 470 3 HOH HOH . H 7 HOH A 71 471 23 HOH HOH . H 7 HOH A 72 472 16 HOH HOH . H 7 HOH A 73 473 2 HOH HOH . H 7 HOH A 74 474 9 HOH HOH . H 7 HOH A 75 475 39 HOH HOH . H 7 HOH A 76 476 12 HOH HOH . H 7 HOH A 77 477 154 HOH HOH . H 7 HOH A 78 478 31 HOH HOH . H 7 HOH A 79 479 99 HOH HOH . H 7 HOH A 80 480 174 HOH HOH . H 7 HOH A 81 481 71 HOH HOH . H 7 HOH A 82 482 52 HOH HOH . H 7 HOH A 83 483 105 HOH HOH . H 7 HOH A 84 484 19 HOH HOH . H 7 HOH A 85 485 22 HOH HOH . H 7 HOH A 86 486 49 HOH HOH . H 7 HOH A 87 487 62 HOH HOH . H 7 HOH A 88 488 130 HOH HOH . H 7 HOH A 89 489 167 HOH HOH . H 7 HOH A 90 490 116 HOH HOH . H 7 HOH A 91 491 104 HOH HOH . H 7 HOH A 92 492 122 HOH HOH . H 7 HOH A 93 493 85 HOH HOH . H 7 HOH A 94 494 178 HOH HOH . H 7 HOH A 95 495 58 HOH HOH . H 7 HOH A 96 496 221 HOH HOH . H 7 HOH A 97 497 150 HOH HOH . H 7 HOH A 98 498 15 HOH HOH . H 7 HOH A 99 499 66 HOH HOH . H 7 HOH A 100 500 10 HOH HOH . H 7 HOH A 101 501 54 HOH HOH . H 7 HOH A 102 502 29 HOH HOH . H 7 HOH A 103 503 101 HOH HOH . H 7 HOH A 104 504 121 HOH HOH . H 7 HOH A 105 505 24 HOH HOH . H 7 HOH A 106 506 128 HOH HOH . H 7 HOH A 107 507 230 HOH HOH . H 7 HOH A 108 508 137 HOH HOH . H 7 HOH A 109 509 92 HOH HOH . H 7 HOH A 110 510 146 HOH HOH . H 7 HOH A 111 511 234 HOH HOH . H 7 HOH A 112 512 141 HOH HOH . H 7 HOH A 113 513 108 HOH HOH . H 7 HOH A 114 514 107 HOH HOH . H 7 HOH A 115 515 40 HOH HOH . H 7 HOH A 116 516 68 HOH HOH . H 7 HOH A 117 517 102 HOH HOH . H 7 HOH A 118 518 207 HOH HOH . H 7 HOH A 119 519 4 HOH HOH . H 7 HOH A 120 520 30 HOH HOH . H 7 HOH A 121 521 214 HOH HOH . H 7 HOH A 122 522 232 HOH HOH . H 7 HOH A 123 523 201 HOH HOH . H 7 HOH A 124 524 189 HOH HOH . H 7 HOH A 125 525 59 HOH HOH . H 7 HOH A 126 526 126 HOH HOH . H 7 HOH A 127 527 7 HOH HOH . H 7 HOH A 128 528 160 HOH HOH . H 7 HOH A 129 529 44 HOH HOH . H 7 HOH A 130 530 165 HOH HOH . H 7 HOH A 131 531 73 HOH HOH . H 7 HOH A 132 532 25 HOH HOH . H 7 HOH A 133 533 46 HOH HOH . H 7 HOH A 134 534 28 HOH HOH . H 7 HOH A 135 535 143 HOH HOH . H 7 HOH A 136 536 239 HOH HOH . H 7 HOH A 137 537 72 HOH HOH . H 7 HOH A 138 538 147 HOH HOH . H 7 HOH A 139 539 38 HOH HOH . H 7 HOH A 140 540 65 HOH HOH . H 7 HOH A 141 541 27 HOH HOH . H 7 HOH A 142 542 75 HOH HOH . H 7 HOH A 143 543 212 HOH HOH . H 7 HOH A 144 544 47 HOH HOH . H 7 HOH A 145 545 153 HOH HOH . H 7 HOH A 146 546 53 HOH HOH . H 7 HOH A 147 547 188 HOH HOH . H 7 HOH A 148 548 84 HOH HOH . H 7 HOH A 149 549 70 HOH HOH . H 7 HOH A 150 550 5 HOH HOH . H 7 HOH A 151 551 135 HOH HOH . H 7 HOH A 152 552 61 HOH HOH . H 7 HOH A 153 553 177 HOH HOH . H 7 HOH A 154 554 106 HOH HOH . H 7 HOH A 155 555 120 HOH HOH . H 7 HOH A 156 556 112 HOH HOH . H 7 HOH A 157 557 187 HOH HOH . H 7 HOH A 158 558 176 HOH HOH . H 7 HOH A 159 559 199 HOH HOH . H 7 HOH A 160 560 93 HOH HOH . H 7 HOH A 161 561 63 HOH HOH . H 7 HOH A 162 562 211 HOH HOH . H 7 HOH A 163 563 197 HOH HOH . H 7 HOH A 164 564 163 HOH HOH . H 7 HOH A 165 565 209 HOH HOH . H 7 HOH A 166 566 233 HOH HOH . H 7 HOH A 167 567 97 HOH HOH . H 7 HOH A 168 568 78 HOH HOH . H 7 HOH A 169 569 168 HOH HOH . H 7 HOH A 170 570 216 HOH HOH . H 7 HOH A 171 571 193 HOH HOH . H 7 HOH A 172 572 219 HOH HOH . H 7 HOH A 173 573 162 HOH HOH . H 7 HOH A 174 574 180 HOH HOH . H 7 HOH A 175 575 220 HOH HOH . H 7 HOH A 176 576 98 HOH HOH . H 7 HOH A 177 577 77 HOH HOH . H 7 HOH A 178 578 90 HOH HOH . H 7 HOH A 179 579 131 HOH HOH . H 7 HOH A 180 580 159 HOH HOH . H 7 HOH A 181 581 103 HOH HOH . H 7 HOH A 182 582 179 HOH HOH . H 7 HOH A 183 583 119 HOH HOH . H 7 HOH A 184 584 190 HOH HOH . H 7 HOH A 185 585 152 HOH HOH . H 7 HOH A 186 586 140 HOH HOH . H 7 HOH A 187 587 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . F 6 13.665 55.351 -12.927 0.68 39.9 ? C FMT 305 A 1 HETATM 2 O O1 FMT . . . F 6 12.647 55.262 -13.612 0.68 39.9 ? O1 FMT 305 A 1 HETATM 3 O O2 FMT . . . F 6 14.706 54.735 -13.155 0.68 39.92 ? O2 FMT 305 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #