data_7LDX
#
_model_server_result.job_id            56jcJqYKVnUuqER5VWuuJg 
_model_server_result.datetime_utc      '2024-11-06 00:19:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ldx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":402}' 
#
_entry.id    7LDX 
#
_exptl.entry_id    7LDX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              217.307 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3-endo)-8-benzyl-8-azabicyclo[3.2.1]octan-3-ol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LDX 
_cell.length_a            67.389 
_cell.length_b            101.679 
_cell.length_c            101.916 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LDX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 M N N 
#
_chem_comp.formula           'C14 H19 N O' 
_chem_comp.formula_weight    217.307 
_chem_comp.id                R9V 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3-endo)-8-benzyl-8-azabicyclo[3.2.1]octan-3-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C5 R9V doub 302 n y 
C4 C3 R9V sing 303 n y 
C5 C R9V sing 304 n y 
C3 C6 R9V sing 305 n n 
C3 C2 R9V doub 306 n y 
C6 N R9V sing 307 n n 
C C1 R9V doub 308 n y 
C8 C9 R9V sing 309 n n 
C8 C7 R9V sing 310 n n 
C9 C10 R9V sing 311 n n 
C2 C1 R9V sing 312 n y 
N C7 R9V sing 313 n n 
N C10 R9V sing 314 n n 
C7 C13 R9V sing 315 n n 
C10 C11 R9V sing 316 n n 
C13 C12 R9V sing 317 n n 
C11 C12 R9V sing 318 n n 
O C12 R9V sing 319 n n 
C4 H1 R9V sing 320 n n 
C5 H2 R9V sing 321 n n 
C6 H3 R9V sing 322 n n 
C6 H4 R9V sing 323 n n 
C7 H5 R9V sing 324 n n 
C8 H6 R9V sing 325 n n 
C8 H7 R9V sing 326 n n 
C9 H8 R9V sing 327 n n 
C9 H9 R9V sing 328 n n 
C10 H10 R9V sing 329 n n 
C11 H11 R9V sing 330 n n 
C11 H12 R9V sing 331 n n 
C12 H13 R9V sing 332 n n 
C13 H14 R9V sing 333 n n 
C13 H15 R9V sing 334 n n 
O H16 R9V sing 335 n n 
C2 H18 R9V sing 336 n n 
C1 H19 R9V sing 337 n n 
C H20 R9V sing 338 n n 
#
_atom_sites.entry_id                     7LDX 
_atom_sites.fract_transf_matrix[1][1]    0.014839 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009835 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009812 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PEG A 1 501 501 PEG PEG . 
D 2 PEG A 1 502 502 PEG PEG . 
E 2 PEG A 1 503 503 PEG PEG . 
F 3 DMS A 1 504 505 DMS DMS . 
G 3 DMS A 1 505 506 DMS DMS . 
H 3 DMS A 1 506 507 DMS DMS . 
I 3 DMS A 1 507 508 DMS DMS . 
J 3 DMS A 1 508 509 DMS DMS . 
K 4 R9V A 1 509 701 R9V LIG . 
L 3 DMS B 1 401 403 DMS DMS . 
M 4 R9V B 1 402 601 R9V LIG . 
N 5 HOH A 1 601 603 HOH HOH . 
N 5 HOH A 2 602 610 HOH HOH . 
N 5 HOH A 3 603 605 HOH HOH . 
N 5 HOH A 4 604 604 HOH HOH . 
N 5 HOH A 5 605 607 HOH HOH . 
N 5 HOH A 6 606 609 HOH HOH . 
N 5 HOH A 7 607 608 HOH HOH . 
N 5 HOH A 8 608 612 HOH HOH . 
N 5 HOH A 9 609 619 HOH HOH . 
N 5 HOH A 10 610 611 HOH HOH . 
N 5 HOH A 11 611 614 HOH HOH . 
N 5 HOH A 12 612 606 HOH HOH . 
N 5 HOH A 13 613 620 HOH HOH . 
N 5 HOH A 14 614 618 HOH HOH . 
N 5 HOH A 15 615 613 HOH HOH . 
N 5 HOH A 16 616 615 HOH HOH . 
N 5 HOH A 17 617 616 HOH HOH . 
N 5 HOH A 18 618 621 HOH HOH . 
N 5 HOH A 19 619 625 HOH HOH . 
N 5 HOH A 20 620 624 HOH HOH . 
N 5 HOH A 21 621 617 HOH HOH . 
N 5 HOH A 22 622 628 HOH HOH . 
N 5 HOH A 23 623 622 HOH HOH . 
N 5 HOH A 24 624 623 HOH HOH . 
N 5 HOH A 25 625 626 HOH HOH . 
N 5 HOH A 26 626 627 HOH HOH . 
N 5 HOH A 27 627 630 HOH HOH . 
N 5 HOH A 28 628 636 HOH HOH . 
N 5 HOH A 29 629 629 HOH HOH . 
N 5 HOH A 30 630 633 HOH HOH . 
N 5 HOH A 31 631 635 HOH HOH . 
N 5 HOH A 32 632 631 HOH HOH . 
N 5 HOH A 33 633 632 HOH HOH . 
N 5 HOH A 34 634 640 HOH HOH . 
N 5 HOH A 35 635 642 HOH HOH . 
N 5 HOH A 36 636 634 HOH HOH . 
N 5 HOH A 37 637 641 HOH HOH . 
N 5 HOH A 38 638 639 HOH HOH . 
N 5 HOH A 39 639 637 HOH HOH . 
N 5 HOH A 40 640 638 HOH HOH . 
N 5 HOH A 41 641 645 HOH HOH . 
N 5 HOH A 42 642 643 HOH HOH . 
N 5 HOH A 43 643 648 HOH HOH . 
N 5 HOH A 44 644 659 HOH HOH . 
N 5 HOH A 45 645 647 HOH HOH . 
N 5 HOH A 46 646 646 HOH HOH . 
N 5 HOH A 47 647 644 HOH HOH . 
N 5 HOH A 48 648 649 HOH HOH . 
N 5 HOH A 49 649 650 HOH HOH . 
N 5 HOH A 50 650 656 HOH HOH . 
N 5 HOH A 51 651 653 HOH HOH . 
N 5 HOH A 52 652 658 HOH HOH . 
N 5 HOH A 53 653 652 HOH HOH . 
N 5 HOH A 54 654 654 HOH HOH . 
N 5 HOH A 55 655 655 HOH HOH . 
N 5 HOH A 56 656 663 HOH HOH . 
N 5 HOH A 57 657 657 HOH HOH . 
N 5 HOH A 58 658 662 HOH HOH . 
N 5 HOH A 59 659 664 HOH HOH . 
N 5 HOH A 60 660 651 HOH HOH . 
N 5 HOH A 61 661 665 HOH HOH . 
N 5 HOH A 62 662 666 HOH HOH . 
N 5 HOH A 63 663 668 HOH HOH . 
N 5 HOH A 64 664 670 HOH HOH . 
N 5 HOH A 65 665 671 HOH HOH . 
N 5 HOH A 66 666 669 HOH HOH . 
N 5 HOH A 67 667 672 HOH HOH . 
N 5 HOH A 68 668 667 HOH HOH . 
N 5 HOH A 69 669 660 HOH HOH . 
N 5 HOH A 70 670 673 HOH HOH . 
N 5 HOH A 71 671 675 HOH HOH . 
N 5 HOH A 72 672 674 HOH HOH . 
N 5 HOH A 73 673 676 HOH HOH . 
N 5 HOH A 74 674 677 HOH HOH . 
N 5 HOH A 75 675 678 HOH HOH . 
N 5 HOH A 76 676 679 HOH HOH . 
N 5 HOH A 77 677 680 HOH HOH . 
N 5 HOH A 78 678 681 HOH HOH . 
N 5 HOH A 79 679 661 HOH HOH . 
O 5 HOH B 1 501 501 HOH HOH . 
O 5 HOH B 2 502 503 HOH HOH . 
O 5 HOH B 3 503 504 HOH HOH . 
O 5 HOH B 4 504 505 HOH HOH . 
O 5 HOH B 5 505 506 HOH HOH . 
O 5 HOH B 6 506 509 HOH HOH . 
O 5 HOH B 7 507 507 HOH HOH . 
O 5 HOH B 8 508 511 HOH HOH . 
O 5 HOH B 9 509 510 HOH HOH . 
O 5 HOH B 10 510 508 HOH HOH . 
O 5 HOH B 11 511 512 HOH HOH . 
O 5 HOH B 12 512 513 HOH HOH . 
O 5 HOH B 13 513 516 HOH HOH . 
O 5 HOH B 14 514 502 HOH HOH . 
O 5 HOH B 15 515 514 HOH HOH . 
O 5 HOH B 16 516 517 HOH HOH . 
O 5 HOH B 17 517 518 HOH HOH . 
O 5 HOH B 18 518 519 HOH HOH . 
O 5 HOH B 19 519 522 HOH HOH . 
O 5 HOH B 20 520 515 HOH HOH . 
O 5 HOH B 21 521 524 HOH HOH . 
O 5 HOH B 22 522 521 HOH HOH . 
O 5 HOH B 23 523 523 HOH HOH . 
O 5 HOH B 24 524 526 HOH HOH . 
O 5 HOH B 25 525 527 HOH HOH . 
O 5 HOH B 26 526 520 HOH HOH . 
O 5 HOH B 27 527 530 HOH HOH . 
O 5 HOH B 28 528 528 HOH HOH . 
O 5 HOH B 29 529 529 HOH HOH . 
O 5 HOH B 30 530 531 HOH HOH . 
O 5 HOH B 31 531 525 HOH HOH . 
O 5 HOH B 32 532 536 HOH HOH . 
O 5 HOH B 33 533 534 HOH HOH . 
O 5 HOH B 34 534 533 HOH HOH . 
O 5 HOH B 35 535 537 HOH HOH . 
O 5 HOH B 36 536 535 HOH HOH . 
O 5 HOH B 37 537 532 HOH HOH . 
O 5 HOH B 38 538 539 HOH HOH . 
O 5 HOH B 39 539 538 HOH HOH . 
O 5 HOH B 40 540 541 HOH HOH . 
O 5 HOH B 41 541 542 HOH HOH . 
O 5 HOH B 42 542 540 HOH HOH . 
O 5 HOH B 43 543 544 HOH HOH . 
O 5 HOH B 44 544 543 HOH HOH . 
O 5 HOH B 45 545 545 HOH HOH . 
O 5 HOH B 46 546 546 HOH HOH . 
O 5 HOH B 47 547 547 HOH HOH . 
O 5 HOH B 48 548 548 HOH HOH . 
O 5 HOH B 49 549 549 HOH HOH . 
O 5 HOH B 50 550 550 HOH HOH . 
O 5 HOH B 51 551 551 HOH HOH . 
O 5 HOH B 52 552 552 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 R9V . . . M 4 18.62 15.273 7.431 1 63.63 ? C4 R9V 402 B 1 
HETATM 2 C C5 R9V . . . M 4 18.996 15.858 8.626 1 65.24 ? C5 R9V 402 B 1 
HETATM 3 C C6 R9V . . . M 4 16.962 14.019 6.002 1 60.65 ? C6 R9V 402 B 1 
HETATM 4 C C7 R9V . . . M 4 17.707 11.723 6.337 1 46.59 ? C7 R9V 402 B 1 
HETATM 5 C C8 R9V . . . M 4 18.404 11.696 5.005 1 42.06 ? C8 R9V 402 B 1 
HETATM 6 C C9 R9V . . . M 4 17.255 11.838 4 1 43.14 ? C9 R9V 402 B 1 
HETATM 7 C C10 R9V . . . M 4 16.028 12.095 4.87 1 43.01 ? C10 R9V 402 B 1 
HETATM 8 C C11 R9V . . . M 4 15.264 10.825 5.21 1 36.33 ? C11 R9V 402 B 1 
HETATM 9 C C12 R9V . . . M 4 16.159 9.784 5.856 1 46.87 ? C12 R9V 402 B 1 
HETATM 10 C C13 R9V . . . M 4 17.218 10.352 6.781 1 41.58 ? C13 R9V 402 B 1 
HETATM 11 O O R9V . . . M 4 16.771 8.972 4.871 1 43.77 ? O R9V 402 B 1 
HETATM 12 N N R9V . . . M 4 16.554 12.598 6.123 1 53.15 ? N R9V 402 B 1 
HETATM 13 C C3 R9V . . . M 4 17.377 14.675 7.305 1 57.81 ? C3 R9V 402 B 1 
HETATM 14 C C2 R9V . . . M 4 16.524 14.69 8.399 1 63.04 ? C2 R9V 402 B 1 
HETATM 15 C C1 R9V . . . M 4 16.889 15.302 9.584 1 66.73 ? C1 R9V 402 B 1 
HETATM 16 C C R9V . . . M 4 18.131 15.874 9.695 1 68.13 ? C R9V 402 B 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#