data_7LEJ # _model_server_result.job_id 2FqsXrpSZqdnZVJntyoloQ _model_server_result.datetime_utc '2025-07-22 07:24:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lej # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7LEJ # _exptl.entry_id 7LEJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.813 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{trans-4-[4-(cyclopropylmethyl)piperazin-1-yl]cyclohexyl}-4-{[(7R)-7-ethyl-5-methyl-8-(1-methylethyl)-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxybenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7LEJ _cell.length_a 72.91 _cell.length_b 72.91 _cell.length_c 50.31 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LEJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H50 N8 O3' _chem_comp.formula_weight 618.813 _chem_comp.id IBI _chem_comp.mon_nstd_flag . _chem_comp.name N-{trans-4-[4-(cyclopropylmethyl)piperazin-1-yl]cyclohexyl}-4-{[(7R)-7-ethyl-5-methyl-8-(1-methylethyl)-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxybenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Volasertib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IBI sing 152 n n C1 N3 IBI sing 153 n n C2 N4 IBI sing 154 n n C5 C6 IBI sing 155 n n C5 N3 IBI sing 156 n n C6 N4 IBI sing 157 n n C7 C8 IBI sing 158 n n C7 C9 IBI sing 159 n n C8 C10 IBI sing 160 n n C11 C12 IBI sing 161 n n C11 C9 IBI sing 162 n n C12 C10 IBI sing 163 n n C15 C17 IBI doub 164 n y C15 C13 IBI sing 165 n y C16 C18 IBI doub 166 n y C16 O37 IBI sing 167 n n C16 C14 IBI sing 168 n y C17 C18 IBI sing 169 n y C17 C39 IBI sing 170 n n C21 C31 IBI sing 171 n n C21 N23 IBI sing 172 n n C21 C20 IBI sing 173 n n N22 C24 IBI sing 174 n n N22 C36 IBI sing 175 n n N22 C20 IBI sing 176 n n C24 C25 IBI doub 177 n y C24 C29 IBI sing 178 n y C31 C32 IBI sing 179 n n C33 C34 IBI sing 180 n n C33 C35 IBI sing 181 n n C33 N23 IBI sing 182 n n C38 O37 IBI sing 183 n n C39 O40 IBI doub 184 n n C39 N41 IBI sing 185 n n C14 N19 IBI sing 186 n n C14 C13 IBI doub 187 n y N19 C26 IBI sing 188 n n C26 N27 IBI doub 189 n y C26 N28 IBI sing 190 n y N27 C25 IBI sing 191 n y C25 N23 IBI sing 192 n n N28 C29 IBI doub 193 n y C20 O30 IBI doub 194 n n N41 C9 IBI sing 195 n n C10 N3 IBI sing 196 n n N4 C42 IBI sing 197 n n C42 C43 IBI sing 198 n n C43 C45 IBI sing 199 n n C43 C44 IBI sing 200 n n C45 C44 IBI sing 201 n n C1 H1 IBI sing 202 n n C1 H1A IBI sing 203 n n C2 H2 IBI sing 204 n n C2 H2A IBI sing 205 n n C5 H5 IBI sing 206 n n C5 H5A IBI sing 207 n n C6 H6 IBI sing 208 n n C6 H6A IBI sing 209 n n C7 H7 IBI sing 210 n n C7 H7A IBI sing 211 n n C8 H8 IBI sing 212 n n C8 H8A IBI sing 213 n n C11 H11 IBI sing 214 n n C11 H11A IBI sing 215 n n C12 H12 IBI sing 216 n n C12 H12A IBI sing 217 n n C15 H15 IBI sing 218 n n C18 H18 IBI sing 219 n n C21 H21 IBI sing 220 n n C31 H31 IBI sing 221 n n C31 H31A IBI sing 222 n n C32 H32 IBI sing 223 n n C32 H32A IBI sing 224 n n C32 H32B IBI sing 225 n n C33 H33 IBI sing 226 n n C34 H34 IBI sing 227 n n C34 H34A IBI sing 228 n n C34 H34B IBI sing 229 n n C35 H35 IBI sing 230 n n C35 H35A IBI sing 231 n n C35 H35B IBI sing 232 n n C36 H36 IBI sing 233 n n C36 H36A IBI sing 234 n n C36 H36B IBI sing 235 n n C38 H38 IBI sing 236 n n C38 H38A IBI sing 237 n n C38 H38B IBI sing 238 n n N19 HN19 IBI sing 239 n n C29 H29 IBI sing 240 n n C13 H13 IBI sing 241 n n N41 HN41 IBI sing 242 n n C9 H9 IBI sing 243 n n C10 H10 IBI sing 244 n n C42 H42 IBI sing 245 n n C42 H42A IBI sing 246 n n C43 H43 IBI sing 247 n n C45 H45 IBI sing 248 n n C45 H45A IBI sing 249 n n C44 H44 IBI sing 250 n n C44 H44A IBI sing 251 n n # _atom_sites.entry_id 7LEJ _atom_sites.fract_transf_matrix[1][1] 0.013716 _atom_sites.fract_transf_matrix[1][2] 0.007919 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IBI A 1 401 1 IBI IBI . C 3 HOH A 1 501 75 HOH HOH . C 3 HOH A 2 502 18 HOH HOH . C 3 HOH A 3 503 74 HOH HOH . C 3 HOH A 4 504 1 HOH HOH . C 3 HOH A 5 505 32 HOH HOH . C 3 HOH A 6 506 73 HOH HOH . C 3 HOH A 7 507 64 HOH HOH . C 3 HOH A 8 508 6 HOH HOH . C 3 HOH A 9 509 2 HOH HOH . C 3 HOH A 10 510 30 HOH HOH . C 3 HOH A 11 511 13 HOH HOH . C 3 HOH A 12 512 14 HOH HOH . C 3 HOH A 13 513 4 HOH HOH . C 3 HOH A 14 514 45 HOH HOH . C 3 HOH A 15 515 24 HOH HOH . C 3 HOH A 16 516 38 HOH HOH . C 3 HOH A 17 517 25 HOH HOH . C 3 HOH A 18 518 7 HOH HOH . C 3 HOH A 19 519 37 HOH HOH . C 3 HOH A 20 520 8 HOH HOH . C 3 HOH A 21 521 3 HOH HOH . C 3 HOH A 22 522 47 HOH HOH . C 3 HOH A 23 523 41 HOH HOH . C 3 HOH A 24 524 39 HOH HOH . C 3 HOH A 25 525 60 HOH HOH . C 3 HOH A 26 526 11 HOH HOH . C 3 HOH A 27 527 51 HOH HOH . C 3 HOH A 28 528 42 HOH HOH . C 3 HOH A 29 529 50 HOH HOH . C 3 HOH A 30 530 27 HOH HOH . C 3 HOH A 31 531 55 HOH HOH . C 3 HOH A 32 532 21 HOH HOH . C 3 HOH A 33 533 9 HOH HOH . C 3 HOH A 34 534 15 HOH HOH . C 3 HOH A 35 535 17 HOH HOH . C 3 HOH A 36 536 44 HOH HOH . C 3 HOH A 37 537 22 HOH HOH . C 3 HOH A 38 538 57 HOH HOH . C 3 HOH A 39 539 69 HOH HOH . C 3 HOH A 40 540 49 HOH HOH . C 3 HOH A 41 541 19 HOH HOH . C 3 HOH A 42 542 28 HOH HOH . C 3 HOH A 43 543 36 HOH HOH . C 3 HOH A 44 544 43 HOH HOH . C 3 HOH A 45 545 26 HOH HOH . C 3 HOH A 46 546 34 HOH HOH . C 3 HOH A 47 547 66 HOH HOH . C 3 HOH A 48 548 70 HOH HOH . C 3 HOH A 49 549 65 HOH HOH . C 3 HOH A 50 550 40 HOH HOH . C 3 HOH A 51 551 76 HOH HOH . C 3 HOH A 52 552 20 HOH HOH . C 3 HOH A 53 553 46 HOH HOH . C 3 HOH A 54 554 35 HOH HOH . C 3 HOH A 55 555 58 HOH HOH . C 3 HOH A 56 556 56 HOH HOH . C 3 HOH A 57 557 62 HOH HOH . C 3 HOH A 58 558 48 HOH HOH . C 3 HOH A 59 559 61 HOH HOH . C 3 HOH A 60 560 53 HOH HOH . C 3 HOH A 61 561 52 HOH HOH . C 3 HOH A 62 562 67 HOH HOH . C 3 HOH A 63 563 72 HOH HOH . C 3 HOH A 64 564 31 HOH HOH . C 3 HOH A 65 565 12 HOH HOH . C 3 HOH A 66 566 63 HOH HOH . C 3 HOH A 67 567 29 HOH HOH . C 3 HOH A 68 568 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IBI . . . B 2 11.4 -6.388 -7.396 1 83.76 ? C1 IBI 401 A 1 HETATM 2 C C2 IBI . . . B 2 10.749 -5.112 -6.826 1 89.4 ? C2 IBI 401 A 1 HETATM 3 C C5 IBI . . . B 2 12.928 -6.441 -5.486 1 86.51 ? C5 IBI 401 A 1 HETATM 4 C C6 IBI . . . B 2 12.263 -5.174 -4.919 1 91.61 ? C6 IBI 401 A 1 HETATM 5 C C7 IBI . . . B 2 10.625 -9.434 -3.506 1 63.71 ? C7 IBI 401 A 1 HETATM 6 C C8 IBI . . . B 2 11.62 -8.56 -4.3 1 70.05 ? C8 IBI 401 A 1 HETATM 7 C C11 IBI . . . B 2 10.343 -10.473 -5.813 1 67.05 ? C11 IBI 401 A 1 HETATM 8 C C12 IBI . . . B 2 10.458 -9.101 -6.51 1 72.01 ? C12 IBI 401 A 1 HETATM 9 C C15 IBI . . . B 2 9.86 -14.084 -2.1 1 38.75 ? C15 IBI 401 A 1 HETATM 10 C C16 IBI . . . B 2 8.946 -16.5 -3.112 1 30.76 ? C16 IBI 401 A 1 HETATM 11 C C17 IBI . . . B 2 9.083 -14.12 -3.259 1 40.69 ? C17 IBI 401 A 1 HETATM 12 C C18 IBI . . . B 2 8.632 -15.328 -3.792 1 36.22 ? C18 IBI 401 A 1 HETATM 13 C C21 IBI . . . B 2 14.319 -16.886 2.661 1 25.76 ? C21 IBI 401 A 1 HETATM 14 N N22 IBI . . . B 2 13.708 -19.321 2.339 1 25.07 ? N22 IBI 401 A 1 HETATM 15 C C24 IBI . . . B 2 12.741 -18.928 1.272 1 24.77 ? C24 IBI 401 A 1 HETATM 16 C C31 IBI . . . B 2 15.662 -16.544 1.911 1 30.22 ? C31 IBI 401 A 1 HETATM 17 C C32 IBI . . . B 2 15.933 -17.561 0.777 1 27.9 ? C32 IBI 401 A 1 HETATM 18 C C33 IBI . . . B 2 12.725 -15.166 1.632 1 24.99 ? C33 IBI 401 A 1 HETATM 19 C C34 IBI . . . B 2 13.08 -14.251 2.829 1 28.2 ? C34 IBI 401 A 1 HETATM 20 C C35 IBI . . . B 2 13.284 -14.535 0.312 1 27.9 ? C35 IBI 401 A 1 HETATM 21 C C36 IBI . . . B 2 13.754 -20.75 2.731 1 23.31 ? C36 IBI 401 A 1 HETATM 22 C C38 IBI . . . B 2 7.524 -17.912 -4.444 1 43.27 ? C38 IBI 401 A 1 HETATM 23 C C39 IBI . . . B 2 8.807 -12.767 -3.977 1 51.05 ? C39 IBI 401 A 1 HETATM 24 O O40 IBI . . . B 2 7.872 -12.605 -4.699 1 56.49 ? O40 IBI 401 A 1 HETATM 25 O O37 IBI . . . B 2 8.562 -17.812 -3.494 1 32.58 ? O37 IBI 401 A 1 HETATM 26 C C14 IBI . . . B 2 9.702 -16.446 -1.973 1 27.72 ? C14 IBI 401 A 1 HETATM 27 N N19 IBI . . . B 2 9.93 -17.784 -1.464 1 27.19 ? N19 IBI 401 A 1 HETATM 28 C C26 IBI . . . B 2 10.939 -18.155 -0.515 1 26.83 ? C26 IBI 401 A 1 HETATM 29 N N27 IBI . . . B 2 11.575 -17.198 0.194 1 27.89 ? N27 IBI 401 A 1 HETATM 30 C C25 IBI . . . B 2 12.468 -17.59 1.079 1 27.93 ? C25 IBI 401 A 1 HETATM 31 N N23 IBI . . . B 2 13.178 -16.586 1.862 1 25.15 ? N23 IBI 401 A 1 HETATM 32 N N28 IBI . . . B 2 11.179 -19.487 -0.342 1 26.89 ? N28 IBI 401 A 1 HETATM 33 C C29 IBI . . . B 2 12.064 -19.878 0.574 1 25.2 ? C29 IBI 401 A 1 HETATM 34 C C20 IBI . . . B 2 14.441 -18.366 3.096 1 23.37 ? C20 IBI 401 A 1 HETATM 35 O O30 IBI . . . B 2 15.166 -18.701 3.969 1 24.25 ? O30 IBI 401 A 1 HETATM 36 C C13 IBI . . . B 2 10.169 -15.258 -1.426 1 29.85 ? C13 IBI 401 A 1 HETATM 37 N N41 IBI . . . B 2 9.839 -11.717 -3.775 1 57.51 ? N41 IBI 401 A 1 HETATM 38 C C9 IBI . . . B 2 9.787 -10.376 -4.387 1 63.53 ? C9 IBI 401 A 1 HETATM 39 C C10 IBI . . . B 2 11.028 -7.996 -5.603 1 74.37 ? C10 IBI 401 A 1 HETATM 40 N N3 IBI . . . B 2 12.045 -7.213 -6.368 1 81.83 ? N3 IBI 401 A 1 HETATM 41 N N4 IBI . . . B 2 11.655 -4.346 -5.962 1 95.04 ? N4 IBI 401 A 1 HETATM 42 C C42 IBI . . . B 2 10.928 -3.223 -5.325 1 96.52 ? C42 IBI 401 A 1 HETATM 43 C C43 IBI . . . B 2 11.773 -1.922 -5.419 1 97.14 ? C43 IBI 401 A 1 HETATM 44 C C45 IBI . . . B 2 12.798 -1.691 -4.302 1 95.26 ? C45 IBI 401 A 1 HETATM 45 C C44 IBI . . . B 2 11.504 -0.87 -4.337 1 96.76 ? C44 IBI 401 A 1 # _model_server_stats.io_time_ms 177 _model_server_stats.parse_time_ms 171 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 397 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 45 #