data_7LEK
#
_model_server_result.job_id            rbMillfeZW-LSxHuHKicvQ 
_model_server_result.datetime_utc      '2024-11-26 23:02:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lek 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":402}' 
#
_entry.id    7LEK 
#
_exptl.entry_id    7LEK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.39 
_cell.angle_gamma         90 
_cell.entry_id            7LEK 
_cell.length_a            110.61 
_cell.length_b            99.32 
_cell.length_c            60.4 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 7LEK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,K 1 1 
B,F,G,L 2 1 
C,H,I,M 3 1 
D,J,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7LEK 
_atom_sites.fract_transf_matrix[1][1]    0.009041 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003006 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010068 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017447 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 VYJ A 1 401 1 VYJ ERK . 
F 2 VYJ B 1 401 3 VYJ ERK . 
G 3 CL B 1 402 1 CL CL . 
H 2 VYJ C 1 401 2 VYJ ERK . 
I 4 EDO C 1 402 1 EDO EDO . 
J 2 VYJ D 1 401 4 VYJ ERK . 
K 5 HOH A 1 501 2 HOH HOH . 
K 5 HOH A 2 502 24 HOH HOH . 
K 5 HOH A 3 503 69 HOH HOH . 
K 5 HOH A 4 504 17 HOH HOH . 
K 5 HOH A 5 505 22 HOH HOH . 
K 5 HOH A 6 506 19 HOH HOH . 
K 5 HOH A 7 507 18 HOH HOH . 
K 5 HOH A 8 508 3 HOH HOH . 
K 5 HOH A 9 509 10 HOH HOH . 
K 5 HOH A 10 510 5 HOH HOH . 
K 5 HOH A 11 511 68 HOH HOH . 
K 5 HOH A 12 512 36 HOH HOH . 
K 5 HOH A 13 513 63 HOH HOH . 
K 5 HOH A 14 514 66 HOH HOH . 
K 5 HOH A 15 515 48 HOH HOH . 
K 5 HOH A 16 516 58 HOH HOH . 
K 5 HOH A 17 517 60 HOH HOH . 
K 5 HOH A 18 518 42 HOH HOH . 
K 5 HOH A 19 519 45 HOH HOH . 
K 5 HOH A 20 520 13 HOH HOH . 
L 5 HOH B 1 501 62 HOH HOH . 
L 5 HOH B 2 502 1 HOH HOH . 
L 5 HOH B 3 503 4 HOH HOH . 
L 5 HOH B 4 504 8 HOH HOH . 
L 5 HOH B 5 505 44 HOH HOH . 
L 5 HOH B 6 506 49 HOH HOH . 
L 5 HOH B 7 507 14 HOH HOH . 
L 5 HOH B 8 508 37 HOH HOH . 
L 5 HOH B 9 509 54 HOH HOH . 
L 5 HOH B 10 510 26 HOH HOH . 
L 5 HOH B 11 511 46 HOH HOH . 
L 5 HOH B 12 512 55 HOH HOH . 
L 5 HOH B 13 513 61 HOH HOH . 
L 5 HOH B 14 514 11 HOH HOH . 
L 5 HOH B 15 515 33 HOH HOH . 
L 5 HOH B 16 516 52 HOH HOH . 
M 5 HOH C 1 501 15 HOH HOH . 
M 5 HOH C 2 502 59 HOH HOH . 
M 5 HOH C 3 503 53 HOH HOH . 
M 5 HOH C 4 504 7 HOH HOH . 
M 5 HOH C 5 505 34 HOH HOH . 
M 5 HOH C 6 506 28 HOH HOH . 
M 5 HOH C 7 507 35 HOH HOH . 
M 5 HOH C 8 508 23 HOH HOH . 
M 5 HOH C 9 509 51 HOH HOH . 
M 5 HOH C 10 510 39 HOH HOH . 
M 5 HOH C 11 511 20 HOH HOH . 
N 5 HOH D 1 501 56 HOH HOH . 
N 5 HOH D 2 502 21 HOH HOH . 
N 5 HOH D 3 503 25 HOH HOH . 
N 5 HOH D 4 504 64 HOH HOH . 
N 5 HOH D 5 505 38 HOH HOH . 
N 5 HOH D 6 506 43 HOH HOH . 
N 5 HOH D 7 507 30 HOH HOH . 
N 5 HOH D 8 508 32 HOH HOH . 
N 5 HOH D 9 509 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 4 16.725 -9.058 7.568 1 32.95 ? C1 EDO 402 C 1 
HETATM 2 O O1 EDO . . . I 4 17.647 -9.449 8.595 1 26.59 ? O1 EDO 402 C 1 
HETATM 3 C C2 EDO . . . I 4 15.491 -9.955 7.606 1 44.51 ? C2 EDO 402 C 1 
HETATM 4 O O2 EDO . . . I 4 14.496 -9.373 8.46 1 28.29 ? O2 EDO 402 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           238 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#