data_7LEM # _model_server_result.job_id o8Jtzkmw7keJyJhIiBD-cQ _model_server_result.datetime_utc '2024-11-05 11:31:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 7LEM # _exptl.entry_id 7LEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 570.685 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(2-methoxy-4-{[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl}phenyl)amino]-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.56 _cell.angle_gamma 90 _cell.entry_id 7LEM _cell.length_a 69.22 _cell.length_b 30.02 _cell.length_c 72.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,O 1 1 B,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # _chem_comp.formula 'C31 H38 N8 O3' _chem_comp.formula_weight 570.685 _chem_comp.id 4K4 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(2-methoxy-4-{[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl}phenyl)amino]-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAO CAQ 4K4 sing 1 n n CAO CBK 4K4 sing 2 n n CAQ NBM 4K4 sing 3 n n CAT CAV 4K4 sing 4 n n CAT NBL 4K4 sing 5 n n CAV NBN 4K4 sing 6 n n OAE CBA 4K4 doub 7 n n CAB NBL 4K4 sing 8 n n NBL CAS 4K4 sing 9 n n NBN CBK 4K4 sing 10 n n NBN CAU 4K4 sing 11 n n CBK CAP 4K4 sing 12 n n NBM CBA 4K4 sing 13 n n NBM CAR 4K4 sing 14 n n CBA CBB 4K4 sing 15 n n CAP CAR 4K4 sing 16 n n CAS CAU 4K4 sing 17 n n CBB CAN 4K4 doub 18 n y CBB CAI 4K4 sing 19 n y CAN CBE 4K4 sing 20 n y CAI CAJ 4K4 doub 21 n y CAA OAZ 4K4 sing 22 n n CBE OAZ 4K4 sing 23 n n CBE CBC 4K4 doub 24 n y CAJ CBC 4K4 sing 25 n y CBC NAY 4K4 sing 26 n n NAY C2 4K4 sing 27 n n C2 N3 4K4 doub 28 n y C2 N1 4K4 sing 29 n y N3 C4 4K4 sing 30 n y CAL CAH 4K4 doub 31 n y CAL CBH 4K4 sing 32 n y N1 C6 4K4 doub 33 n y CAD NBP 4K4 sing 34 n n CAH CAG 4K4 sing 35 n y C4 NBP 4K4 sing 36 n n C4 C5 4K4 doub 37 n y NBP CBH 4K4 sing 38 n n CBH CBG 4K4 doub 39 n y C6 C5 4K4 sing 40 n y CAG CAK 4K4 doub 41 n y C5 NBO 4K4 sing 42 n n CBG CAK 4K4 sing 43 n y CBG CBF 4K4 sing 44 n n NBO CBF 4K4 sing 45 n n NBO CAC 4K4 sing 46 n n CBF OAF 4K4 doub 47 n n C6 H1 4K4 sing 48 n n CAU H2 4K4 sing 49 n n CAU H3 4K4 sing 50 n n CAS H4 4K4 sing 51 n n CAS H5 4K4 sing 52 n n CAB H7 4K4 sing 53 n n CAB H8 4K4 sing 54 n n CAB H9 4K4 sing 55 n n CAT H10 4K4 sing 56 n n CAT H11 4K4 sing 57 n n CAV H12 4K4 sing 58 n n CAV H13 4K4 sing 59 n n CBK H15 4K4 sing 60 n n CAP H16 4K4 sing 61 n n CAP H17 4K4 sing 62 n n CAR H18 4K4 sing 63 n n CAR H19 4K4 sing 64 n n CAO H20 4K4 sing 65 n n CAO H21 4K4 sing 66 n n CAQ H22 4K4 sing 67 n n CAQ H23 4K4 sing 68 n n CAN H24 4K4 sing 69 n n CAA H25 4K4 sing 70 n n CAA H26 4K4 sing 71 n n CAA H27 4K4 sing 72 n n CAI H28 4K4 sing 73 n n CAJ H29 4K4 sing 74 n n NAY H30 4K4 sing 75 n n CAD H31 4K4 sing 76 n n CAD H32 4K4 sing 77 n n CAD H33 4K4 sing 78 n n CAL H34 4K4 sing 79 n n CAH H35 4K4 sing 80 n n CAG H36 4K4 sing 81 n n CAK H37 4K4 sing 82 n n CAC H38 4K4 sing 83 n n CAC H39 4K4 sing 84 n n CAC H40 4K4 sing 85 n n # _atom_sites.entry_id 7LEM _atom_sites.fract_transf_matrix[1][1] 0.014447 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003753 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4K4 A 1 201 2 4K4 4K4 . D 3 EDO A 1 202 1 EDO EDO . E 3 EDO A 1 203 2 EDO EDO . F 3 EDO A 1 204 5 EDO EDO . G 3 EDO A 1 205 7 EDO EDO . H 3 EDO A 1 206 9 EDO EDO . I 2 4K4 B 1 201 1 4K4 4K4 . J 3 EDO B 1 202 3 EDO EDO . K 3 EDO B 1 203 4 EDO EDO . L 3 EDO B 1 204 6 EDO EDO . M 3 EDO B 1 205 8 EDO EDO . N 3 EDO B 1 206 10 EDO EDO . O 4 HOH A 1 301 79 HOH HOH . O 4 HOH A 2 302 81 HOH HOH . O 4 HOH A 3 303 47 HOH HOH . O 4 HOH A 4 304 82 HOH HOH . O 4 HOH A 5 305 10 HOH HOH . O 4 HOH A 6 306 52 HOH HOH . O 4 HOH A 7 307 97 HOH HOH . O 4 HOH A 8 308 34 HOH HOH . O 4 HOH A 9 309 33 HOH HOH . O 4 HOH A 10 310 17 HOH HOH . O 4 HOH A 11 311 93 HOH HOH . O 4 HOH A 12 312 26 HOH HOH . O 4 HOH A 13 313 44 HOH HOH . O 4 HOH A 14 314 49 HOH HOH . O 4 HOH A 15 315 13 HOH HOH . O 4 HOH A 16 316 1 HOH HOH . O 4 HOH A 17 317 63 HOH HOH . O 4 HOH A 18 318 42 HOH HOH . O 4 HOH A 19 319 18 HOH HOH . O 4 HOH A 20 320 32 HOH HOH . O 4 HOH A 21 321 35 HOH HOH . O 4 HOH A 22 322 28 HOH HOH . O 4 HOH A 23 323 6 HOH HOH . O 4 HOH A 24 324 25 HOH HOH . O 4 HOH A 25 325 43 HOH HOH . O 4 HOH A 26 326 3 HOH HOH . O 4 HOH A 27 327 77 HOH HOH . O 4 HOH A 28 328 36 HOH HOH . O 4 HOH A 29 329 37 HOH HOH . O 4 HOH A 30 330 85 HOH HOH . O 4 HOH A 31 331 31 HOH HOH . O 4 HOH A 32 332 94 HOH HOH . O 4 HOH A 33 333 21 HOH HOH . O 4 HOH A 34 334 29 HOH HOH . O 4 HOH A 35 335 83 HOH HOH . O 4 HOH A 36 336 91 HOH HOH . O 4 HOH A 37 337 5 HOH HOH . O 4 HOH A 38 338 11 HOH HOH . O 4 HOH A 39 339 62 HOH HOH . O 4 HOH A 40 340 95 HOH HOH . O 4 HOH A 41 341 53 HOH HOH . O 4 HOH A 42 342 78 HOH HOH . O 4 HOH A 43 343 55 HOH HOH . O 4 HOH A 44 344 74 HOH HOH . O 4 HOH A 45 345 22 HOH HOH . O 4 HOH A 46 346 70 HOH HOH . O 4 HOH A 47 347 98 HOH HOH . O 4 HOH A 48 348 64 HOH HOH . P 4 HOH B 1 301 56 HOH HOH . P 4 HOH B 2 302 61 HOH HOH . P 4 HOH B 3 303 75 HOH HOH . P 4 HOH B 4 304 27 HOH HOH . P 4 HOH B 5 305 7 HOH HOH . P 4 HOH B 6 306 66 HOH HOH . P 4 HOH B 7 307 51 HOH HOH . P 4 HOH B 8 308 12 HOH HOH . P 4 HOH B 9 309 69 HOH HOH . P 4 HOH B 10 310 48 HOH HOH . P 4 HOH B 11 311 67 HOH HOH . P 4 HOH B 12 312 9 HOH HOH . P 4 HOH B 13 313 72 HOH HOH . P 4 HOH B 14 314 40 HOH HOH . P 4 HOH B 15 315 76 HOH HOH . P 4 HOH B 16 316 2 HOH HOH . P 4 HOH B 17 317 88 HOH HOH . P 4 HOH B 18 318 45 HOH HOH . P 4 HOH B 19 319 39 HOH HOH . P 4 HOH B 20 320 23 HOH HOH . P 4 HOH B 21 321 60 HOH HOH . P 4 HOH B 22 322 19 HOH HOH . P 4 HOH B 23 323 46 HOH HOH . P 4 HOH B 24 324 57 HOH HOH . P 4 HOH B 25 325 65 HOH HOH . P 4 HOH B 26 326 87 HOH HOH . P 4 HOH B 27 327 30 HOH HOH . P 4 HOH B 28 328 59 HOH HOH . P 4 HOH B 29 329 20 HOH HOH . P 4 HOH B 30 330 14 HOH HOH . P 4 HOH B 31 331 38 HOH HOH . P 4 HOH B 32 332 15 HOH HOH . P 4 HOH B 33 333 89 HOH HOH . P 4 HOH B 34 334 84 HOH HOH . P 4 HOH B 35 335 90 HOH HOH . P 4 HOH B 36 336 58 HOH HOH . P 4 HOH B 37 337 92 HOH HOH . P 4 HOH B 38 338 73 HOH HOH . P 4 HOH B 39 339 80 HOH HOH . P 4 HOH B 40 340 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 4K4 . . . I 2 4.76 -5.944 -31.922 1 29.12 ? C4 4K4 201 B 1 HETATM 2 C C5 4K4 . . . I 2 4.763 -4.945 -31.017 1 24.1 ? C5 4K4 201 B 1 HETATM 3 C C6 4K4 . . . I 2 5.948 -4.561 -30.45 1 30.25 ? C6 4K4 201 B 1 HETATM 4 N N1 4K4 . . . I 2 7.091 -5.145 -30.791 1 33.98 ? N1 4K4 201 B 1 HETATM 5 N N3 4K4 . . . I 2 5.917 -6.526 -32.263 1 24.25 ? N3 4K4 201 B 1 HETATM 6 C CAU 4K4 . . . I 2 6.601 -6.432 -40.965 1 70.08 ? CAU 4K4 201 B 1 HETATM 7 C CAS 4K4 . . . I 2 5.131 -6.268 -41.355 1 65 ? CAS 4K4 201 B 1 HETATM 8 N NBL 4K4 . . . I 2 4.807 -6.936 -42.601 1 63.73 ? NBL 4K4 201 B 1 HETATM 9 C CAB 4K4 . . . I 2 5.403 -6.2 -43.703 1 61.5 ? CAB 4K4 201 B 1 HETATM 10 C CAT 4K4 . . . I 2 5.265 -8.321 -42.614 1 68.92 ? CAT 4K4 201 B 1 HETATM 11 C CAV 4K4 . . . I 2 6.742 -8.455 -42.227 1 68.96 ? CAV 4K4 201 B 1 HETATM 12 N NBN 4K4 . . . I 2 7.032 -7.825 -40.947 1 65.24 ? NBN 4K4 201 B 1 HETATM 13 C CBK 4K4 . . . I 2 8.531 -7.916 -40.629 1 62.15 ? CBK 4K4 201 B 1 HETATM 14 C CAP 4K4 . . . I 2 8.988 -9.317 -40.559 1 60.57 ? CAP 4K4 201 B 1 HETATM 15 C CAR 4K4 . . . I 2 8.405 -10.124 -39.393 1 46.15 ? CAR 4K4 201 B 1 HETATM 16 C CAO 4K4 . . . I 2 8.859 -7.237 -39.343 1 59.22 ? CAO 4K4 201 B 1 HETATM 17 C CAQ 4K4 . . . I 2 8.258 -7.949 -38.133 1 53.78 ? CAQ 4K4 201 B 1 HETATM 18 N NBM 4K4 . . . I 2 8.464 -9.457 -38.025 1 39.86 ? NBM 4K4 201 B 1 HETATM 19 C CBA 4K4 . . . I 2 8.626 -10.156 -36.744 1 35.48 ? CBA 4K4 201 B 1 HETATM 20 O OAE 4K4 . . . I 2 8.727 -11.336 -36.719 1 38.64 ? OAE 4K4 201 B 1 HETATM 21 C CBB 4K4 . . . I 2 8.601 -9.279 -35.473 1 33.22 ? CBB 4K4 201 B 1 HETATM 22 C CAN 4K4 . . . I 2 9.603 -8.341 -35.185 1 28.97 ? CAN 4K4 201 B 1 HETATM 23 C CBE 4K4 . . . I 2 9.51 -7.527 -34.052 1 35.8 ? CBE 4K4 201 B 1 HETATM 24 O OAZ 4K4 . . . I 2 10.496 -6.567 -33.713 1 33.62 ? OAZ 4K4 201 B 1 HETATM 25 C CAA 4K4 . . . I 2 10.367 -5.436 -34.503 1 43.78 ? CAA 4K4 201 B 1 HETATM 26 C CAI 4K4 . . . I 2 7.498 -9.416 -34.635 1 36.6 ? CAI 4K4 201 B 1 HETATM 27 C CAJ 4K4 . . . I 2 7.396 -8.637 -33.501 1 32.15 ? CAJ 4K4 201 B 1 HETATM 28 C CBC 4K4 . . . I 2 8.395 -7.699 -33.261 1 26.77 ? CBC 4K4 201 B 1 HETATM 29 N NAY 4K4 . . . I 2 8.345 -6.838 -32.094 1 24.8 ? NAY 4K4 201 B 1 HETATM 30 C C2 4K4 . . . I 2 7.087 -6.15 -31.715 1 26.92 ? C2 4K4 201 B 1 HETATM 31 N NBP 4K4 . . . I 2 3.463 -6.269 -32.484 1 31.15 ? NBP 4K4 201 B 1 HETATM 32 C CAD 4K4 . . . I 2 3.643 -7.535 -33.195 1 30.46 ? CAD 4K4 201 B 1 HETATM 33 C CBH 4K4 . . . I 2 3.044 -5.266 -33.49 1 31.37 ? CBH 4K4 201 B 1 HETATM 34 C CAL 4K4 . . . I 2 3.094 -5.403 -34.888 1 34.55 ? CAL 4K4 201 B 1 HETATM 35 C CAH 4K4 . . . I 2 2.625 -4.377 -35.711 1 24.77 ? CAH 4K4 201 B 1 HETATM 36 C CAG 4K4 . . . I 2 2.085 -3.215 -35.184 1 32.38 ? CAG 4K4 201 B 1 HETATM 37 C CAK 4K4 . . . I 2 2.029 -3.063 -33.809 1 32.28 ? CAK 4K4 201 B 1 HETATM 38 C CBG 4K4 . . . I 2 2.518 -4.093 -32.986 1 25.84 ? CBG 4K4 201 B 1 HETATM 39 C CBF 4K4 . . . I 2 2.409 -3.929 -31.452 1 25.31 ? CBF 4K4 201 B 1 HETATM 40 O OAF 4K4 . . . I 2 1.417 -3.453 -30.981 1 32.77 ? OAF 4K4 201 B 1 HETATM 41 N NBO 4K4 . . . I 2 3.48 -4.357 -30.585 1 24.18 ? NBO 4K4 201 B 1 HETATM 42 C CAC 4K4 . . . I 2 3.363 -4.212 -29.135 1 27.03 ? CAC 4K4 201 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 42 #