data_7LEO
#
_model_server_result.job_id            hqZ07oucLj7EoMuNj42-yw 
_model_server_result.datetime_utc      '2024-11-05 04:11:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7leo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":303}' 
#
_entry.id    7LEO 
#
_exptl.entry_id    7LEO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              382.534 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '{(2R,4E)-2-(hydroxymethyl)-4-[5-methyl-3-(2-methylpropyl)hexylidene]-5-oxooxolan-2-yl}methyl 2,2-dimethylpropanoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.72 
_cell.angle_gamma         90 
_cell.entry_id            7LEO 
_cell.length_a            83.388 
_cell.length_b            50.888 
_cell.length_c            37.485 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LEO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,K 1 1 
B,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 3 A HIS 231 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc2 A SG CYS 16 A CYS 244 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc3 A SG CYS 19 A CYS 247 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc4 A SG CYS 33 A CYS 261 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc5 A SG CYS 36 A CYS 264 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc6 A ND1 HIS 41 A HIS 269 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc7 A SG CYS 44 A CYS 272 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc8 A SG CYS 52 A CYS 280 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc9 B ND1 HIS 3 D HIS 231 1_555 H ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc10 B SG CYS 16 D CYS 244 1_555 I ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc11 B SG CYS 19 D CYS 247 1_555 I ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc12 B SG CYS 33 D CYS 261 1_555 H ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc13 B SG CYS 36 D CYS 264 1_555 H ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc14 B ND1 HIS 41 D HIS 269 1_555 I ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc15 B SG CYS 44 D CYS 272 1_555 I ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc16 B SG CYS 52 D CYS 280 1_555 H ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
#
_chem_comp.formula           'C22 H38 O5' 
_chem_comp.formula_weight    382.534 
_chem_comp.id                XZJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '{(2R,4E)-2-(hydroxymethyl)-4-[5-methyl-3-(2-methylpropyl)hexylidene]-5-oxooxolan-2-yl}methyl 2,2-dimethylpropanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     AJH-836 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C12 XZJ sing 431 n n 
O5 C14 XZJ doub 432 n n 
C13 O4 XZJ sing 433 n n 
C13 C10 XZJ sing 434 n n 
C12 C10 XZJ sing 435 n n 
C16 C15 XZJ sing 436 n n 
C14 O4 XZJ sing 437 n n 
C14 C15 XZJ sing 438 n n 
O1 C10 XZJ sing 439 n n 
O1 C11 XZJ sing 440 n n 
C10 C9 XZJ sing 441 n n 
C15 C17 XZJ sing 442 n n 
C15 C18 XZJ sing 443 n n 
C11 O2 XZJ doub 444 n n 
C11 C8 XZJ sing 445 n n 
C9 C8 XZJ sing 446 n n 
C8 C7 XZJ doub 447 e n 
C7 C6 XZJ sing 448 n n 
C6 C5 XZJ sing 449 n n 
C22 C20 XZJ sing 450 n n 
C19 C20 XZJ sing 451 n n 
C19 C5 XZJ sing 452 n n 
C20 C21 XZJ sing 453 n n 
C5 C4 XZJ sing 454 n n 
C4 C2 XZJ sing 455 n n 
C2 C1 XZJ sing 456 n n 
C2 C3 XZJ sing 457 n n 
C1 H1 XZJ sing 458 n n 
C1 H2 XZJ sing 459 n n 
C1 H3 XZJ sing 460 n n 
C12 H4 XZJ sing 461 n n 
C12 H5 XZJ sing 462 n n 
C13 H6 XZJ sing 463 n n 
C13 H7 XZJ sing 464 n n 
C16 H8 XZJ sing 465 n n 
C16 H9 XZJ sing 466 n n 
C16 H10 XZJ sing 467 n n 
C17 H11 XZJ sing 468 n n 
C17 H12 XZJ sing 469 n n 
C17 H13 XZJ sing 470 n n 
C18 H14 XZJ sing 471 n n 
C18 H15 XZJ sing 472 n n 
C18 H16 XZJ sing 473 n n 
C19 H17 XZJ sing 474 n n 
C19 H18 XZJ sing 475 n n 
C2 H19 XZJ sing 476 n n 
C20 H20 XZJ sing 477 n n 
C21 H21 XZJ sing 478 n n 
C21 H22 XZJ sing 479 n n 
C21 H23 XZJ sing 480 n n 
C22 H24 XZJ sing 481 n n 
C22 H25 XZJ sing 482 n n 
C22 H26 XZJ sing 483 n n 
C3 H27 XZJ sing 484 n n 
C3 H28 XZJ sing 485 n n 
C3 H29 XZJ sing 486 n n 
C4 H30 XZJ sing 487 n n 
C4 H31 XZJ sing 488 n n 
C5 H32 XZJ sing 489 n n 
C6 H33 XZJ sing 490 n n 
C6 H34 XZJ sing 491 n n 
C7 H35 XZJ sing 492 n n 
C9 H37 XZJ sing 493 n n 
O3 H38 XZJ sing 494 n n 
C9 H36 XZJ sing 495 n n 
#
_atom_sites.entry_id                     7LEO 
_atom_sites.fract_transf_matrix[1][1]    0.011992 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003833 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019651 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.028007 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 301 1 ZN ZN . 
D 2 ZN A 1 302 2 ZN ZN . 
E 3 XP5 A 1 303 1 XP5 LIG . 
F 3 XP5 A 1 304 2 XP5 LIG . 
G 3 XP5 A 1 305 3 XP5 LIG . 
H 2 ZN D 1 301 1 ZN ZN . 
I 2 ZN D 1 302 2 ZN ZN . 
J 4 XZJ D 1 303 1 XZJ AJH . 
K 5 HOH A 1 401 31 HOH HOH . 
K 5 HOH A 2 402 15 HOH HOH . 
K 5 HOH A 3 403 47 HOH HOH . 
K 5 HOH A 4 404 52 HOH HOH . 
K 5 HOH A 5 405 48 HOH HOH . 
K 5 HOH A 6 406 60 HOH HOH . 
K 5 HOH A 7 407 49 HOH HOH . 
K 5 HOH A 8 408 32 HOH HOH . 
K 5 HOH A 9 409 5 HOH HOH . 
K 5 HOH A 10 410 22 HOH HOH . 
K 5 HOH A 11 411 27 HOH HOH . 
K 5 HOH A 12 412 30 HOH HOH . 
K 5 HOH A 13 413 62 HOH HOH . 
K 5 HOH A 14 414 2 HOH HOH . 
K 5 HOH A 15 415 50 HOH HOH . 
K 5 HOH A 16 416 1 HOH HOH . 
K 5 HOH A 17 417 53 HOH HOH . 
K 5 HOH A 18 418 58 HOH HOH . 
K 5 HOH A 19 419 21 HOH HOH . 
K 5 HOH A 20 420 11 HOH HOH . 
K 5 HOH A 21 421 56 HOH HOH . 
K 5 HOH A 22 422 57 HOH HOH . 
K 5 HOH A 23 423 17 HOH HOH . 
K 5 HOH A 24 424 33 HOH HOH . 
K 5 HOH A 25 425 37 HOH HOH . 
K 5 HOH A 26 426 25 HOH HOH . 
K 5 HOH A 27 427 12 HOH HOH . 
K 5 HOH A 28 428 55 HOH HOH . 
K 5 HOH A 29 429 59 HOH HOH . 
K 5 HOH A 30 430 42 HOH HOH . 
K 5 HOH A 31 431 41 HOH HOH . 
K 5 HOH A 32 432 43 HOH HOH . 
K 5 HOH A 33 433 26 HOH HOH . 
K 5 HOH A 34 434 28 HOH HOH . 
K 5 HOH A 35 435 54 HOH HOH . 
K 5 HOH A 36 436 34 HOH HOH . 
K 5 HOH A 37 437 51 HOH HOH . 
K 5 HOH A 38 438 44 HOH HOH . 
K 5 HOH A 39 439 19 HOH HOH . 
L 5 HOH D 1 401 10 HOH HOH . 
L 5 HOH D 2 402 35 HOH HOH . 
L 5 HOH D 3 403 6 HOH HOH . 
L 5 HOH D 4 404 39 HOH HOH . 
L 5 HOH D 5 405 61 HOH HOH . 
L 5 HOH D 6 406 20 HOH HOH . 
L 5 HOH D 7 407 23 HOH HOH . 
L 5 HOH D 8 408 4 HOH HOH . 
L 5 HOH D 9 409 13 HOH HOH . 
L 5 HOH D 10 410 18 HOH HOH . 
L 5 HOH D 11 411 14 HOH HOH . 
L 5 HOH D 12 412 38 HOH HOH . 
L 5 HOH D 13 413 16 HOH HOH . 
L 5 HOH D 14 414 24 HOH HOH . 
L 5 HOH D 15 415 7 HOH HOH . 
L 5 HOH D 16 416 3 HOH HOH . 
L 5 HOH D 17 417 29 HOH HOH . 
L 5 HOH D 18 418 8 HOH HOH . 
L 5 HOH D 19 419 40 HOH HOH . 
L 5 HOH D 20 420 36 HOH HOH . 
L 5 HOH D 21 421 46 HOH HOH . 
L 5 HOH D 22 422 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 XZJ . . . J 4 -16.391 12.368 33.924 1 41.82 ? C1 XZJ 303 D 1 
HETATM 2 C C10 XZJ . . . J 4 -14.625 10.856 25.697 1 32.18 ? C10 XZJ 303 D 1 
HETATM 3 C C11 XZJ . . . J 4 -12.72 10.068 26.799 1 38.15 ? C11 XZJ 303 D 1 
HETATM 4 C C12 XZJ . . . J 4 -15.663 9.987 25.009 1 28.1 ? C12 XZJ 303 D 1 
HETATM 5 C C13 XZJ . . . J 4 -14.5 12.198 24.997 1 33.59 ? C13 XZJ 303 D 1 
HETATM 6 C C14 XZJ . . . J 4 -13.367 14.236 25.39 1 39.88 ? C14 XZJ 303 D 1 
HETATM 7 C C15 XZJ . . . J 4 -12.23 14.888 26.145 1 44.58 ? C15 XZJ 303 D 1 
HETATM 8 C C16 XZJ . . . J 4 -11.781 16.129 25.382 1 50.08 ? C16 XZJ 303 D 1 
HETATM 9 C C17 XZJ . . . J 4 -11.071 13.904 26.265 1 43.88 ? C17 XZJ 303 D 1 
HETATM 10 C C18 XZJ . . . J 4 -12.716 15.284 27.533 1 45.23 ? C18 XZJ 303 D 1 
HETATM 11 C C19 XZJ . . . J 4 -12.861 13.146 30.367 1 45.12 ? C19 XZJ 303 D 1 
HETATM 12 C C2 XZJ . . . J 4 -15.194 11.748 33.218 1 43.93 ? C2 XZJ 303 D 1 
HETATM 13 C C20 XZJ . . . J 4 -11.664 13.862 31.021 1 47.81 ? C20 XZJ 303 D 1 
HETATM 14 C C21 XZJ . . . J 4 -11.492 13.506 32.491 1 45.03 ? C21 XZJ 303 D 1 
HETATM 15 C C22 XZJ . . . J 4 -10.38 13.584 30.252 1 50.17 ? C22 XZJ 303 D 1 
HETATM 16 C C3 XZJ . . . J 4 -14.079 11.481 34.216 1 47.58 ? C3 XZJ 303 D 1 
HETATM 17 C C4 XZJ . . . J 4 -14.697 12.653 32.088 1 41.16 ? C4 XZJ 303 D 1 
HETATM 18 C C5 XZJ . . . J 4 -13.592 12.065 31.188 1 45.2 ? C5 XZJ 303 D 1 
HETATM 19 C C6 XZJ . . . J 4 -14.182 11.004 30.248 1 43.29 ? C6 XZJ 303 D 1 
HETATM 20 C C7 XZJ . . . J 4 -13.263 10.623 29.123 1 38.33 ? C7 XZJ 303 D 1 
HETATM 21 C C8 XZJ . . . J 4 -13.592 10.589 27.832 1 33.5 ? C8 XZJ 303 D 1 
HETATM 22 C C9 XZJ . . . J 4 -14.883 11.015 27.199 1 30.34 ? C9 XZJ 303 D 1 
HETATM 23 O O1 XZJ . . . J 4 -13.326 10.182 25.59 1 33.5 ? O1 XZJ 303 D 1 
HETATM 24 O O2 XZJ . . . J 4 -11.628 9.573 26.898 1 39.68 ? O2 XZJ 303 D 1 
HETATM 25 O O3 XZJ . . . J 4 -15.369 9.778 23.634 1 28.94 ? O3 XZJ 303 D 1 
HETATM 26 O O4 XZJ . . . J 4 -13.462 12.922 25.673 1 39.22 ? O4 XZJ 303 D 1 
HETATM 27 O O5 XZJ . . . J 4 -14.117 14.801 24.641 1 39.01 ? O5 XZJ 303 D 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#