data_7LEP
#
_model_server_result.job_id            yHj4aOdngaUS-YBqM9xrRQ 
_model_server_result.datetime_utc      '2025-07-05 02:36:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lep 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"QA","auth_seq_id":501}' 
#
_entry.id    7LEP 
#
_exptl.entry_id    7LEP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              328.674 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-[2-chloro-6-(trifluoromethoxy)phenyl]-1H-benzimidazol-2-ol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LEP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LEP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 QA N N 
? 10 UA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 315 A CYS 714 1_555 A SG CYS 370 A CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 B SG CYS 323 B CYS 718 1_555 B SG CYS 378 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 C SG CYS 314 C CYS 714 1_555 C SG CYS 369 C CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 D SG CYS 323 D CYS 718 1_555 D SG CYS 378 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 G SG CYS 72 G CYS 90 1_555 G SG CYS 82 G CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 H SG CYS 72 H CYS 90 1_555 H SG CYS 82 H CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C14 H8 Cl F3 N2 O2' 
_chem_comp.formula_weight    328.674 
_chem_comp.id                XVD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-[2-chloro-6-(trifluoromethoxy)phenyl]-1H-benzimidazol-2-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C10 XVD sing 643 n y 
N1 C13 XVD doub 644 n y 
C11 C10 XVD doub 645 n y 
C11 C12 XVD sing 646 n y 
CL1 C1 XVD sing 647 n n 
O1 C13 XVD sing 648 n n 
C10 C9 XVD sing 649 n y 
C13 N2 XVD sing 650 n y 
C12 C7 XVD doub 651 n y 
C9 N2 XVD sing 652 n y 
C9 C8 XVD doub 653 n y 
C7 C8 XVD sing 654 n y 
C7 C6 XVD sing 655 n n 
C1 C6 XVD doub 656 n y 
C1 C2 XVD sing 657 n y 
C6 C5 XVD sing 658 n y 
C2 C3 XVD doub 659 n y 
F3 C14 XVD sing 660 n n 
C5 O2 XVD sing 661 n n 
C5 C4 XVD doub 662 n y 
C3 C4 XVD sing 663 n y 
C14 F2 XVD sing 664 n n 
C14 O2 XVD sing 665 n n 
C14 F1 XVD sing 666 n n 
C4 H2 XVD sing 667 n n 
C8 H3 XVD sing 668 n n 
C11 H4 XVD sing 669 n n 
C12 H5 XVD sing 670 n n 
C2 H6 XVD sing 671 n n 
C3 H7 XVD sing 672 n n 
N2 H8 XVD sing 673 n n 
O1 H1 XVD sing 674 n n 
#
_atom_sites.entry_id                     7LEP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 6 ZK1 A 1 901 901 ZK1 ZK1 . 
J 7 POV A 1 902 32 POV CXC . 
K 7 POV A 1 903 34 POV CXC . 
L 7 POV A 1 904 35 POV CXC . 
M 7 POV A 1 905 36 POV CXC . 
N 7 POV A 1 906 52 POV CXC . 
O 7 POV A 1 907 53 POV CXC . 
P 7 POV A 1 908 58 POV CXC . 
Q 7 POV A 1 909 59 POV CXC . 
R 6 ZK1 B 1 901 901 ZK1 ZK1 . 
S 7 POV B 1 902 1001 POV POV . 
T 8 C14 B 1 903 904 C14 C14 . 
U 7 POV B 1 904 30 POV CXC . 
V 7 POV B 1 905 31 POV CXC . 
W 7 POV B 1 906 51 POV CXC . 
X 7 POV B 1 907 54 POV CXC . 
Y 6 ZK1 C 1 901 901 ZK1 ZK1 . 
Z 9 D10 C 1 902 907 D10 D10 . 
AA 7 POV C 1 903 1301 POV CXC . 
BA 7 POV C 1 904 50 POV CXC . 
CA 7 POV C 1 905 55 POV CXC . 
DA 7 POV C 1 906 56 POV CXC . 
EA 7 POV C 1 907 57 POV CXC . 
FA 7 POV C 1 908 61 POV CXC . 
GA 7 POV C 1 909 62 POV CXC . 
HA 6 ZK1 D 1 901 901 ZK1 ZK1 . 
IA 7 POV D 1 902 1001 POV POV . 
JA 7 POV D 1 903 37 POV CXC . 
KA 7 POV D 1 904 40 POV CXC . 
LA 7 POV D 1 905 41 POV CXC . 
MA 7 POV D 1 906 48 POV CXC . 
NA 7 POV D 1 907 60 POV CXC . 
OA 7 POV E 1 201 45 POV CXC . 
PA 7 POV F 1 201 47 POV CXC . 
QA 10 XVD G 1 501 501 XVD LIG . 
RA 11 OCT G 1 502 504 OCT OCT . 
SA 12 D12 G 1 503 902 D12 D12 . 
TA 7 POV G 1 504 43 POV CXC . 
UA 10 XVD H 1 501 501 XVD LIG . 
VA 11 OCT H 1 502 504 OCT OCT . 
WA 12 D12 H 1 503 902 D12 D12 . 
XA 7 POV H 1 504 42 POV CXC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 XVD . . . QA 10 245.781 239.11 142.625 1 30.32 ? N1 XVD 501 G 1 
HETATM 2 C C4 XVD . . . QA 10 239.321 241.116 146.456 1 30.32 ? C4 XVD 501 G 1 
HETATM 3 C C5 XVD . . . QA 10 240.441 240.568 145.876 1 30.32 ? C5 XVD 501 G 1 
HETATM 4 C C6 XVD . . . QA 10 241.035 241.19 144.808 1 30.32 ? C6 XVD 501 G 1 
HETATM 5 C C7 XVD . . . QA 10 242.268 240.57 144.181 1 30.32 ? C7 XVD 501 G 1 
HETATM 6 C C8 XVD . . . QA 10 243.515 241.103 144.43 1 30.32 ? C8 XVD 501 G 1 
HETATM 7 C C10 XVD . . . QA 10 244.533 239.427 143.033 1 30.32 ? C10 XVD 501 G 1 
HETATM 8 C C13 XVD . . . QA 10 246.626 239.965 143.16 1 30.32 ? C13 XVD 501 G 1 
HETATM 9 C C1 XVD . . . QA 10 240.507 242.354 144.299 1 30.32 ? C1 XVD 501 G 1 
HETATM 10 C C11 XVD . . . QA 10 243.261 238.872 142.779 1 30.32 ? C11 XVD 501 G 1 
HETATM 11 C C12 XVD . . . QA 10 242.141 239.452 143.358 1 30.32 ? C12 XVD 501 G 1 
HETATM 12 C C14 XVD . . . QA 10 240.165 238.292 146.358 1 30.32 ? C14 XVD 501 G 1 
HETATM 13 C C2 XVD . . . QA 10 239.386 242.906 144.868 1 30.32 ? C2 XVD 501 G 1 
HETATM 14 C C3 XVD . . . QA 10 238.795 242.285 145.946 1 30.32 ? C3 XVD 501 G 1 
HETATM 15 C C9 XVD . . . QA 10 244.656 240.51 143.848 1 30.32 ? C9 XVD 501 G 1 
HETATM 16 F F1 XVD . . . QA 10 239.393 238.293 147.476 1 30.32 ? F1 XVD 501 G 1 
HETATM 17 F F2 XVD . . . QA 10 240.908 237.154 146.304 1 30.32 ? F2 XVD 501 G 1 
HETATM 18 F F3 XVD . . . QA 10 239.383 238.372 145.256 1 30.32 ? F3 XVD 501 G 1 
HETATM 19 N N2 XVD . . . QA 10 245.968 240.817 143.904 1 30.32 ? N2 XVD 501 G 1 
HETATM 20 O O1 XVD . . . QA 10 248.008 239.955 142.993 1 30.32 ? O1 XVD 501 G 1 
HETATM 21 O O2 XVD . . . QA 10 241.004 239.395 146.375 1 30.32 ? O2 XVD 501 G 1 
HETATM 22 CL CL1 XVD . . . QA 10 241.264 243.165 142.908 1 30.32 ? CL1 XVD 501 G 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           22 
#