data_7LES # _model_server_result.job_id 6tcZXR5j4dldZl78yYAGMA _model_server_result.datetime_utc '2024-10-13 23:17:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7les # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7LES # _exptl.entry_id 7LES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.04 _cell.angle_gamma 90 _cell.entry_id 7LES _cell.length_a 98.56 _cell.length_b 125.58 _cell.length_c 100.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LES _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,V,W 1 1 C,D,N,O,P,Q,R,S,T,U,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 J N N ? 2 N N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 402 A CYS 434 1_555 E FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc2 E FE HEM . A HEM 501 1_555 G N3 IMD . A IMD 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc3 B SG CYS 402 B CYS 434 1_555 J FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc4 J FE HEM . B HEM 502 1_555 L N3 IMD . B IMD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc5 C SG CYS 402 C CYS 434 1_555 N FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc6 N FE HEM . C HEM 501 1_555 O N3 IMD . C IMD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc7 D SG CYS 402 D CYS 434 1_555 R FE HEM . D HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc8 R FE HEM . D HEM 502 1_555 T N3 IMD . D IMD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 133 n n CHA C4D HEM doub 134 n n CHA HHA HEM sing 135 n n CHB C4A HEM sing 136 n n CHB C1B HEM doub 137 n n CHB HHB HEM sing 138 n n CHC C4B HEM sing 139 n n CHC C1C HEM doub 140 n n CHC HHC HEM sing 141 n n CHD C4C HEM doub 142 n n CHD C1D HEM sing 143 n n CHD HHD HEM sing 144 n n C1A C2A HEM doub 145 n y C1A NA HEM sing 146 n y C2A C3A HEM sing 147 n y C2A CAA HEM sing 148 n n C3A C4A HEM doub 149 n y C3A CMA HEM sing 150 n n C4A NA HEM sing 151 n y CMA HMA HEM sing 152 n n CMA HMAA HEM sing 153 n n CMA HMAB HEM sing 154 n n CAA CBA HEM sing 155 n n CAA HAA HEM sing 156 n n CAA HAAA HEM sing 157 n n CBA CGA HEM sing 158 n n CBA HBA HEM sing 159 n n CBA HBAA HEM sing 160 n n CGA O1A HEM doub 161 n n CGA O2A HEM sing 162 n n C1B C2B HEM sing 163 n n C1B NB HEM sing 164 n n C2B C3B HEM doub 165 n n C2B CMB HEM sing 166 n n C3B C4B HEM sing 167 n n C3B CAB HEM sing 168 n n C4B NB HEM doub 169 n n CMB HMB HEM sing 170 n n CMB HMBA HEM sing 171 n n CMB HMBB HEM sing 172 n n CAB CBB HEM doub 173 n n CAB HAB HEM sing 174 n n CBB HBB HEM sing 175 n n CBB HBBA HEM sing 176 n n C1C C2C HEM sing 177 n y C1C NC HEM sing 178 n y C2C C3C HEM doub 179 n y C2C CMC HEM sing 180 n n C3C C4C HEM sing 181 n y C3C CAC HEM sing 182 n n C4C NC HEM sing 183 n y CMC HMC HEM sing 184 n n CMC HMCA HEM sing 185 n n CMC HMCB HEM sing 186 n n CAC CBC HEM doub 187 n n CAC HAC HEM sing 188 n n CBC HBC HEM sing 189 n n CBC HBCA HEM sing 190 n n C1D C2D HEM sing 191 n n C1D ND HEM doub 192 n n C2D C3D HEM doub 193 n n C2D CMD HEM sing 194 n n C3D C4D HEM sing 195 n n C3D CAD HEM sing 196 n n C4D ND HEM sing 197 n n CMD HMD HEM sing 198 n n CMD HMDA HEM sing 199 n n CMD HMDB HEM sing 200 n n CAD CBD HEM sing 201 n n CAD HAD HEM sing 202 n n CAD HADA HEM sing 203 n n CBD CGD HEM sing 204 n n CBD HBD HEM sing 205 n n CBD HBDA HEM sing 206 n n CGD O1D HEM doub 207 n n CGD O2D HEM sing 208 n n O2A H2A HEM sing 209 n n O2D H2D HEM sing 210 n n FE NA HEM sing 211 n n FE NB HEM sing 212 n n FE NC HEM sing 213 n n FE ND HEM sing 214 n n # _atom_sites.entry_id 7LES _atom_sites.fract_transf_matrix[1][1] 0.010146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000008 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 501 501 HEM HEM . F 3 PEG A 1 502 503 PEG PEG . G 4 IMD A 1 503 2 IMD IMD . H 5 FMT A 1 504 6 FMT FMT . I 3 PEG B 1 501 502 PEG PEG . J 2 HEM B 1 502 501 HEM HEM . K 3 PEG B 1 503 502 PEG PEG . L 4 IMD B 1 504 3 IMD IMD . M 5 FMT B 1 505 9 FMT FMT . N 2 HEM C 1 501 501 HEM HEM . O 4 IMD C 1 502 4 IMD IMD . P 5 FMT C 1 503 4 FMT FMT . Q 3 PEG D 1 501 502 PEG PEG . R 2 HEM D 1 502 501 HEM HEM . S 3 PEG D 1 503 502 PEG PEG . T 4 IMD D 1 504 1 IMD IMD . U 3 PEG D 1 505 3 PEG PEG . V 6 HOH A 1 601 10 HOH HOH . V 6 HOH A 2 602 328 HOH HOH . V 6 HOH A 3 603 338 HOH HOH . V 6 HOH A 4 604 11 HOH HOH . V 6 HOH A 5 605 27 HOH HOH . V 6 HOH A 6 606 20 HOH HOH . V 6 HOH A 7 607 336 HOH HOH . V 6 HOH A 8 608 341 HOH HOH . V 6 HOH A 9 609 326 HOH HOH . V 6 HOH A 10 610 321 HOH HOH . V 6 HOH A 11 611 339 HOH HOH . V 6 HOH A 12 612 19 HOH HOH . V 6 HOH A 13 613 342 HOH HOH . V 6 HOH A 14 614 340 HOH HOH . V 6 HOH A 15 615 337 HOH HOH . V 6 HOH A 16 616 335 HOH HOH . W 6 HOH B 1 601 344 HOH HOH . W 6 HOH B 2 602 347 HOH HOH . W 6 HOH B 3 603 320 HOH HOH . W 6 HOH B 4 604 349 HOH HOH . W 6 HOH B 5 605 343 HOH HOH . W 6 HOH B 6 606 350 HOH HOH . W 6 HOH B 7 607 345 HOH HOH . W 6 HOH B 8 608 346 HOH HOH . X 6 HOH C 1 601 329 HOH HOH . X 6 HOH C 2 602 356 HOH HOH . X 6 HOH C 3 603 355 HOH HOH . X 6 HOH C 4 604 348 HOH HOH . X 6 HOH C 5 605 333 HOH HOH . X 6 HOH C 6 606 352 HOH HOH . X 6 HOH C 7 607 325 HOH HOH . X 6 HOH C 8 608 351 HOH HOH . X 6 HOH C 9 609 327 HOH HOH . Y 6 HOH D 1 601 332 HOH HOH . Y 6 HOH D 2 602 357 HOH HOH . Y 6 HOH D 3 603 334 HOH HOH . Y 6 HOH D 4 604 322 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 20.298 -4.821 135.51 1 60.84 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . E 2 23.602 -1.887 137.479 1 58.41 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . E 2 27.121 -4.997 136.322 1 51.73 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . E 2 23.911 -7.618 133.917 1 59.03 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . E 2 20.889 -3.772 136.172 1 65.09 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . E 2 20.201 -2.638 136.715 1 63.83 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . E 2 21.143 -1.814 137.265 1 66.52 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . E 2 22.409 -2.422 137.048 1 64.04 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . E 2 20.913 -0.499 137.986 1 67.43 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . E 2 18.712 -2.401 136.724 1 62.17 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . E 2 18.211 -1.878 135.381 1 62.95 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . E 2 16.718 -1.692 135.414 1 64.61 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . E 2 16.041 -1.862 136.46 1 67.33 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . E 2 16.13 -1.365 134.368 1 69.57 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . E 2 24.847 -2.517 137.348 1 55.65 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . E 2 26.054 -1.984 137.883 1 55.11 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . E 2 27.074 -2.848 137.559 1 52.51 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . E 2 26.412 -3.928 136.817 1 52.17 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . E 2 26.164 -0.682 138.64 1 54.69 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . E 2 28.516 -2.815 137.878 1 51.82 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . E 2 29.108 -1.975 138.728 1 59.05 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . E 2 26.582 -5.992 135.542 1 55.52 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . E 2 27.339 -6.985 134.875 1 58.16 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . E 2 26.416 -7.758 134.162 1 60.13 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . E 2 25.111 -7.186 134.428 1 59.91 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . E 2 28.844 -7.156 134.994 1 57.44 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . E 2 26.635 -8.945 133.286 1 59.37 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . E 2 27.805 -9.49 132.959 1 61.74 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . E 2 22.683 -7.028 134.208 1 60.05 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . E 2 21.451 -7.61 133.663 1 63.83 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . E 2 20.448 -6.858 134.138 1 62.95 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . E 2 21.071 -5.805 134.934 1 58.75 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . E 2 21.3 -8.83 132.774 1 64.55 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . E 2 18.999 -7.006 133.768 1 67.28 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . E 2 18.003 -7.533 134.765 1 72.18 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . E 2 16.688 -7.645 134.015 1 76.69 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . E 2 16.309 -6.911 133.029 1 66.55 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . E 2 15.947 -8.561 134.427 1 86.15 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . E 2 22.249 -3.602 136.354 1 63.16 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . E 2 25.114 -3.651 136.738 1 52.66 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . E 2 25.26 -6.106 135.237 1 56.74 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . E 2 22.415 -5.943 134.96 1 58.05 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . E 2 23.696 -4.834 135.806 1 58.88 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #