data_7LES # _model_server_result.job_id RmXqj0EJOqxf1Fptkzu70Q _model_server_result.datetime_utc '2024-10-13 23:15:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7les # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":501}' # _entry.id 7LES # _exptl.entry_id 7LES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.04 _cell.angle_gamma 90 _cell.entry_id 7LES _cell.length_a 98.56 _cell.length_b 125.58 _cell.length_c 100.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LES _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,V,W 1 1 C,D,N,O,P,Q,R,S,T,U,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 K N N ? 3 Q N N ? 3 S N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 402 A CYS 434 1_555 E FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc2 E FE HEM . A HEM 501 1_555 G N3 IMD . A IMD 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc3 B SG CYS 402 B CYS 434 1_555 J FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc4 J FE HEM . B HEM 502 1_555 L N3 IMD . B IMD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc5 C SG CYS 402 C CYS 434 1_555 N FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc6 N FE HEM . C HEM 501 1_555 O N3 IMD . C IMD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc7 D SG CYS 402 D CYS 434 1_555 R FE HEM . D HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc8 R FE HEM . D HEM 502 1_555 T N3 IMD . D IMD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 333 n n C1 C2 PEG sing 334 n n C1 H11 PEG sing 335 n n C1 H12 PEG sing 336 n n O1 HO1 PEG sing 337 n n C2 O2 PEG sing 338 n n C2 H21 PEG sing 339 n n C2 H22 PEG sing 340 n n O2 C3 PEG sing 341 n n C3 C4 PEG sing 342 n n C3 H31 PEG sing 343 n n C3 H32 PEG sing 344 n n C4 O4 PEG sing 345 n n C4 H41 PEG sing 346 n n C4 H42 PEG sing 347 n n O4 HO4 PEG sing 348 n n # _atom_sites.entry_id 7LES _atom_sites.fract_transf_matrix[1][1] 0.010146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000008 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 501 501 HEM HEM . F 3 PEG A 1 502 503 PEG PEG . G 4 IMD A 1 503 2 IMD IMD . H 5 FMT A 1 504 6 FMT FMT . I 3 PEG B 1 501 502 PEG PEG . J 2 HEM B 1 502 501 HEM HEM . K 3 PEG B 1 503 502 PEG PEG . L 4 IMD B 1 504 3 IMD IMD . M 5 FMT B 1 505 9 FMT FMT . N 2 HEM C 1 501 501 HEM HEM . O 4 IMD C 1 502 4 IMD IMD . P 5 FMT C 1 503 4 FMT FMT . Q 3 PEG D 1 501 502 PEG PEG . R 2 HEM D 1 502 501 HEM HEM . S 3 PEG D 1 503 502 PEG PEG . T 4 IMD D 1 504 1 IMD IMD . U 3 PEG D 1 505 3 PEG PEG . V 6 HOH A 1 601 10 HOH HOH . V 6 HOH A 2 602 328 HOH HOH . V 6 HOH A 3 603 338 HOH HOH . V 6 HOH A 4 604 11 HOH HOH . V 6 HOH A 5 605 27 HOH HOH . V 6 HOH A 6 606 20 HOH HOH . V 6 HOH A 7 607 336 HOH HOH . V 6 HOH A 8 608 341 HOH HOH . V 6 HOH A 9 609 326 HOH HOH . V 6 HOH A 10 610 321 HOH HOH . V 6 HOH A 11 611 339 HOH HOH . V 6 HOH A 12 612 19 HOH HOH . V 6 HOH A 13 613 342 HOH HOH . V 6 HOH A 14 614 340 HOH HOH . V 6 HOH A 15 615 337 HOH HOH . V 6 HOH A 16 616 335 HOH HOH . W 6 HOH B 1 601 344 HOH HOH . W 6 HOH B 2 602 347 HOH HOH . W 6 HOH B 3 603 320 HOH HOH . W 6 HOH B 4 604 349 HOH HOH . W 6 HOH B 5 605 343 HOH HOH . W 6 HOH B 6 606 350 HOH HOH . W 6 HOH B 7 607 345 HOH HOH . W 6 HOH B 8 608 346 HOH HOH . X 6 HOH C 1 601 329 HOH HOH . X 6 HOH C 2 602 356 HOH HOH . X 6 HOH C 3 603 355 HOH HOH . X 6 HOH C 4 604 348 HOH HOH . X 6 HOH C 5 605 333 HOH HOH . X 6 HOH C 6 606 352 HOH HOH . X 6 HOH C 7 607 325 HOH HOH . X 6 HOH C 8 608 351 HOH HOH . X 6 HOH C 9 609 327 HOH HOH . Y 6 HOH D 1 601 332 HOH HOH . Y 6 HOH D 2 602 357 HOH HOH . Y 6 HOH D 3 603 334 HOH HOH . Y 6 HOH D 4 604 322 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . Q 3 62.619 -9.035 141.116 1 98.87 ? C1 PEG 501 D 1 HETATM 2 O O1 PEG . . . Q 3 62.768 -10.245 140.348 1 89.2 ? O1 PEG 501 D 1 HETATM 3 C C2 PEG . . . Q 3 62.607 -7.743 140.27 1 101.71 ? C2 PEG 501 D 1 HETATM 4 O O2 PEG . . . Q 3 62.985 -6.575 141.029 1 96.51 ? O2 PEG 501 D 1 HETATM 5 C C3 PEG . . . Q 3 62.999 -5.367 140.272 1 91 ? C3 PEG 501 D 1 HETATM 6 C C4 PEG . . . Q 3 62.311 -4.313 141.116 1 94.4 ? C4 PEG 501 D 1 HETATM 7 O O4 PEG . . . Q 3 60.908 -4.577 141.071 1 89.09 ? O4 PEG 501 D 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #