data_7LES
#
_model_server_result.job_id            ZxIKbjlDc804gbMnTnvAsQ 
_model_server_result.datetime_utc      '2024-10-13 23:22:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7les 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":502}' 
#
_entry.id    7LES 
#
_exptl.entry_id    7LES 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.04 
_cell.angle_gamma         90 
_cell.entry_id            7LES 
_cell.length_a            98.56 
_cell.length_b            125.58 
_cell.length_c            100.51 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LES 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L,M,V,W 1 1 
C,D,N,O,P,Q,R,S,T,U,X,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 J N N 
? 2 N N N 
? 2 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 402 A CYS 434 1_555 E FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc2 E FE HEM . A HEM 501 1_555 G N3 IMD . A IMD 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc3 B SG CYS 402 B CYS 434 1_555 J FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc4 J FE HEM . B HEM 502 1_555 L N3 IMD . B IMD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
metalc ? metalc5 C SG CYS 402 C CYS 434 1_555 N FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc6 N FE HEM . C HEM 501 1_555 O N3 IMD . C IMD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
metalc ? metalc7 D SG CYS 402 D CYS 434 1_555 R FE HEM . D HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc8 R FE HEM . D HEM 502 1_555 T N3 IMD . D IMD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 133 n n 
CHA C4D HEM doub 134 n n 
CHA HHA HEM sing 135 n n 
CHB C4A HEM sing 136 n n 
CHB C1B HEM doub 137 n n 
CHB HHB HEM sing 138 n n 
CHC C4B HEM sing 139 n n 
CHC C1C HEM doub 140 n n 
CHC HHC HEM sing 141 n n 
CHD C4C HEM doub 142 n n 
CHD C1D HEM sing 143 n n 
CHD HHD HEM sing 144 n n 
C1A C2A HEM doub 145 n y 
C1A NA HEM sing 146 n y 
C2A C3A HEM sing 147 n y 
C2A CAA HEM sing 148 n n 
C3A C4A HEM doub 149 n y 
C3A CMA HEM sing 150 n n 
C4A NA HEM sing 151 n y 
CMA HMA HEM sing 152 n n 
CMA HMAA HEM sing 153 n n 
CMA HMAB HEM sing 154 n n 
CAA CBA HEM sing 155 n n 
CAA HAA HEM sing 156 n n 
CAA HAAA HEM sing 157 n n 
CBA CGA HEM sing 158 n n 
CBA HBA HEM sing 159 n n 
CBA HBAA HEM sing 160 n n 
CGA O1A HEM doub 161 n n 
CGA O2A HEM sing 162 n n 
C1B C2B HEM sing 163 n n 
C1B NB HEM sing 164 n n 
C2B C3B HEM doub 165 n n 
C2B CMB HEM sing 166 n n 
C3B C4B HEM sing 167 n n 
C3B CAB HEM sing 168 n n 
C4B NB HEM doub 169 n n 
CMB HMB HEM sing 170 n n 
CMB HMBA HEM sing 171 n n 
CMB HMBB HEM sing 172 n n 
CAB CBB HEM doub 173 n n 
CAB HAB HEM sing 174 n n 
CBB HBB HEM sing 175 n n 
CBB HBBA HEM sing 176 n n 
C1C C2C HEM sing 177 n y 
C1C NC HEM sing 178 n y 
C2C C3C HEM doub 179 n y 
C2C CMC HEM sing 180 n n 
C3C C4C HEM sing 181 n y 
C3C CAC HEM sing 182 n n 
C4C NC HEM sing 183 n y 
CMC HMC HEM sing 184 n n 
CMC HMCA HEM sing 185 n n 
CMC HMCB HEM sing 186 n n 
CAC CBC HEM doub 187 n n 
CAC HAC HEM sing 188 n n 
CBC HBC HEM sing 189 n n 
CBC HBCA HEM sing 190 n n 
C1D C2D HEM sing 191 n n 
C1D ND HEM doub 192 n n 
C2D C3D HEM doub 193 n n 
C2D CMD HEM sing 194 n n 
C3D C4D HEM sing 195 n n 
C3D CAD HEM sing 196 n n 
C4D ND HEM sing 197 n n 
CMD HMD HEM sing 198 n n 
CMD HMDA HEM sing 199 n n 
CMD HMDB HEM sing 200 n n 
CAD CBD HEM sing 201 n n 
CAD HAD HEM sing 202 n n 
CAD HADA HEM sing 203 n n 
CBD CGD HEM sing 204 n n 
CBD HBD HEM sing 205 n n 
CBD HBDA HEM sing 206 n n 
CGD O1D HEM doub 207 n n 
CGD O2D HEM sing 208 n n 
O2A H2A HEM sing 209 n n 
O2D H2D HEM sing 210 n n 
FE NA HEM sing 211 n n 
FE NB HEM sing 212 n n 
FE NC HEM sing 213 n n 
FE ND HEM sing 214 n n 
#
_atom_sites.entry_id                     7LES 
_atom_sites.fract_transf_matrix[1][1]    0.010146 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000008 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007963 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009949 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 501 501 HEM HEM . 
F 3 PEG A 1 502 503 PEG PEG . 
G 4 IMD A 1 503 2 IMD IMD . 
H 5 FMT A 1 504 6 FMT FMT . 
I 3 PEG B 1 501 502 PEG PEG . 
J 2 HEM B 1 502 501 HEM HEM . 
K 3 PEG B 1 503 502 PEG PEG . 
L 4 IMD B 1 504 3 IMD IMD . 
M 5 FMT B 1 505 9 FMT FMT . 
N 2 HEM C 1 501 501 HEM HEM . 
O 4 IMD C 1 502 4 IMD IMD . 
P 5 FMT C 1 503 4 FMT FMT . 
Q 3 PEG D 1 501 502 PEG PEG . 
R 2 HEM D 1 502 501 HEM HEM . 
S 3 PEG D 1 503 502 PEG PEG . 
T 4 IMD D 1 504 1 IMD IMD . 
U 3 PEG D 1 505 3 PEG PEG . 
V 6 HOH A 1 601 10 HOH HOH . 
V 6 HOH A 2 602 328 HOH HOH . 
V 6 HOH A 3 603 338 HOH HOH . 
V 6 HOH A 4 604 11 HOH HOH . 
V 6 HOH A 5 605 27 HOH HOH . 
V 6 HOH A 6 606 20 HOH HOH . 
V 6 HOH A 7 607 336 HOH HOH . 
V 6 HOH A 8 608 341 HOH HOH . 
V 6 HOH A 9 609 326 HOH HOH . 
V 6 HOH A 10 610 321 HOH HOH . 
V 6 HOH A 11 611 339 HOH HOH . 
V 6 HOH A 12 612 19 HOH HOH . 
V 6 HOH A 13 613 342 HOH HOH . 
V 6 HOH A 14 614 340 HOH HOH . 
V 6 HOH A 15 615 337 HOH HOH . 
V 6 HOH A 16 616 335 HOH HOH . 
W 6 HOH B 1 601 344 HOH HOH . 
W 6 HOH B 2 602 347 HOH HOH . 
W 6 HOH B 3 603 320 HOH HOH . 
W 6 HOH B 4 604 349 HOH HOH . 
W 6 HOH B 5 605 343 HOH HOH . 
W 6 HOH B 6 606 350 HOH HOH . 
W 6 HOH B 7 607 345 HOH HOH . 
W 6 HOH B 8 608 346 HOH HOH . 
X 6 HOH C 1 601 329 HOH HOH . 
X 6 HOH C 2 602 356 HOH HOH . 
X 6 HOH C 3 603 355 HOH HOH . 
X 6 HOH C 4 604 348 HOH HOH . 
X 6 HOH C 5 605 333 HOH HOH . 
X 6 HOH C 6 606 352 HOH HOH . 
X 6 HOH C 7 607 325 HOH HOH . 
X 6 HOH C 8 608 351 HOH HOH . 
X 6 HOH C 9 609 327 HOH HOH . 
Y 6 HOH D 1 601 332 HOH HOH . 
Y 6 HOH D 2 602 357 HOH HOH . 
Y 6 HOH D 3 603 334 HOH HOH . 
Y 6 HOH D 4 604 322 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . R 2 76.821 -32.288 142.708 1 60.44 ? CHA HEM 502 D 1 
HETATM 2 C CHB HEM . . . R 2 79.049 -28.485 144.659 1 55.98 ? CHB HEM 502 D 1 
HETATM 3 C CHC HEM . . . R 2 83.345 -30.216 143.188 1 49.9 ? CHC HEM 502 D 1 
HETATM 4 C CHD HEM . . . R 2 81.061 -33.808 140.971 1 56.87 ? CHD HEM 502 D 1 
HETATM 5 C C1A HEM . . . R 2 77.068 -31.13 143.387 1 63.16 ? C1A HEM 502 D 1 
HETATM 6 C C2A HEM . . . R 2 76.066 -30.313 143.987 1 63.67 ? C2A HEM 502 D 1 
HETATM 7 C C3A HEM . . . R 2 76.698 -29.248 144.531 1 62.08 ? C3A HEM 502 D 1 
HETATM 8 C C4A HEM . . . R 2 78.084 -29.383 144.26 1 58.34 ? C4A HEM 502 D 1 
HETATM 9 C CMA HEM . . . R 2 76.048 -28.122 145.283 1 66.71 ? CMA HEM 502 D 1 
HETATM 10 C CAA HEM . . . R 2 74.585 -30.58 144.045 1 67.54 ? CAA HEM 502 D 1 
HETATM 11 C CBA HEM . . . R 2 73.898 -30.103 142.767 1 70.42 ? CBA HEM 502 D 1 
HETATM 12 C CGA HEM . . . R 2 72.45 -30.504 142.756 1 70.71 ? CGA HEM 502 D 1 
HETATM 13 O O1A HEM . . . R 2 71.986 -31.295 143.594 1 75.88 ? O1A HEM 502 D 1 
HETATM 14 O O2A HEM . . . R 2 71.691 -30.031 141.903 1 72.39 ? O2A HEM 502 D 1 
HETATM 15 C C1B HEM . . . R 2 80.439 -28.647 144.422 1 56.26 ? C1B HEM 502 D 1 
HETATM 16 C C2B HEM . . . R 2 81.427 -27.741 144.916 1 52.67 ? C2B HEM 502 D 1 
HETATM 17 C C3B HEM . . . R 2 82.637 -28.202 144.502 1 43.79 ? C3B HEM 502 D 1 
HETATM 18 C C4B HEM . . . R 2 82.355 -29.432 143.757 1 46.18 ? C4B HEM 502 D 1 
HETATM 19 C CMB HEM . . . R 2 81.117 -26.51 145.747 1 54.57 ? CMB HEM 502 D 1 
HETATM 20 C CAB HEM . . . R 2 83.971 -27.698 144.797 1 44.15 ? CAB HEM 502 D 1 
HETATM 21 C CBB HEM . . . R 2 84.243 -26.841 145.781 1 48 ? CBB HEM 502 D 1 
HETATM 22 C C1C HEM . . . R 2 83.123 -31.37 142.442 1 51.71 ? C1C HEM 502 D 1 
HETATM 23 C C2C HEM . . . R 2 84.13 -32.12 141.777 1 52.66 ? C2C HEM 502 D 1 
HETATM 24 C C3C HEM . . . R 2 83.474 -33.16 141.126 1 53.9 ? C3C HEM 502 D 1 
HETATM 25 C C4C HEM . . . R 2 82.075 -33.005 141.429 1 53.85 ? C4C HEM 502 D 1 
HETATM 26 C CMC HEM . . . R 2 85.626 -31.839 141.825 1 51.88 ? CMC HEM 502 D 1 
HETATM 27 C CAC HEM . . . R 2 84.016 -34.255 140.274 1 54.72 ? CAC HEM 502 D 1 
HETATM 28 C CBC HEM . . . R 2 85.274 -34.428 139.896 1 58.21 ? CBC HEM 502 D 1 
HETATM 29 C C1D HEM . . . R 2 79.713 -33.639 141.298 1 57.46 ? C1D HEM 502 D 1 
HETATM 30 C C2D HEM . . . R 2 78.715 -34.612 140.819 1 58.26 ? C2D HEM 502 D 1 
HETATM 31 C C3D HEM . . . R 2 77.556 -34.194 141.319 1 60.46 ? C3D HEM 502 D 1 
HETATM 32 C C4D HEM . . . R 2 77.84 -32.977 142.084 1 57.19 ? C4D HEM 502 D 1 
HETATM 33 C CMD HEM . . . R 2 78.915 -35.852 139.958 1 58.98 ? CMD HEM 502 D 1 
HETATM 34 C CAD HEM . . . R 2 76.225 -34.827 141.037 1 71.51 ? CAD HEM 502 D 1 
HETATM 35 C CBD HEM . . . R 2 75.642 -35.683 142.137 1 81.8 ? CBD HEM 502 D 1 
HETATM 36 C CGD HEM . . . R 2 74.339 -36.245 141.608 1 90.77 ? CGD HEM 502 D 1 
HETATM 37 O O1D HEM . . . R 2 74.003 -37.341 142.104 1 97.62 ? O1D HEM 502 D 1 
HETATM 38 O O2D HEM . . . R 2 73.618 -35.665 140.723 1 85.75 ? O2D HEM 502 D 1 
HETATM 39 N NA HEM . . . R 2 78.301 -30.522 143.519 1 59.53 ? NA HEM 502 D 1 
HETATM 40 N NB HEM . . . R 2 81.045 -29.615 143.746 1 49.67 ? NB HEM 502 D 1 
HETATM 41 N NC HEM . . . R 2 81.893 -31.897 142.183 1 50.21 ? NC HEM 502 D 1 
HETATM 42 N ND HEM . . . R 2 79.147 -32.681 142.061 1 55.55 ? ND HEM 502 D 1 
HETATM 43 FE FE HEM . . . R 2 80.043 -31.211 142.866 1 55.64 ? FE HEM 502 D 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    110 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#