data_7LF3 # _model_server_result.job_id Dm1x2M5FCBByDhiRANhjiw _model_server_result.datetime_utc '2024-11-27 22:18:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lf3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7LF3 # _exptl.entry_id 7LF3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{(2R,4E)-2-(hydroxymethyl)-4-[5-methyl-3-(2-methylpropyl)hexylidene]-5-oxooxolan-2-yl}methyl 2,2-dimethylpropanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.57 _cell.angle_gamma 90 _cell.entry_id 7LF3 _cell.length_a 34.913 _cell.length_b 25.943 _cell.length_c 57.642 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 3 A HIS 231 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc2 A SG CYS 16 A CYS 244 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A SG CYS 19 A CYS 247 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 A SG CYS 33 A CYS 261 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc5 A SG CYS 36 A CYS 264 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc6 A ND1 HIS 41 A HIS 269 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 A SG CYS 44 A CYS 272 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc8 A SG CYS 52 A CYS 280 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'C22 H38 O5' _chem_comp.formula_weight 382.534 _chem_comp.id XZJ _chem_comp.mon_nstd_flag . _chem_comp.name '{(2R,4E)-2-(hydroxymethyl)-4-[5-methyl-3-(2-methylpropyl)hexylidene]-5-oxooxolan-2-yl}methyl 2,2-dimethylpropanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms AJH-836 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C12 XZJ sing 431 n n O5 C14 XZJ doub 432 n n C13 O4 XZJ sing 433 n n C13 C10 XZJ sing 434 n n C12 C10 XZJ sing 435 n n C16 C15 XZJ sing 436 n n C14 O4 XZJ sing 437 n n C14 C15 XZJ sing 438 n n O1 C10 XZJ sing 439 n n O1 C11 XZJ sing 440 n n C10 C9 XZJ sing 441 n n C15 C17 XZJ sing 442 n n C15 C18 XZJ sing 443 n n C11 O2 XZJ doub 444 n n C11 C8 XZJ sing 445 n n C9 C8 XZJ sing 446 n n C8 C7 XZJ doub 447 e n C7 C6 XZJ sing 448 n n C6 C5 XZJ sing 449 n n C22 C20 XZJ sing 450 n n C19 C20 XZJ sing 451 n n C19 C5 XZJ sing 452 n n C20 C21 XZJ sing 453 n n C5 C4 XZJ sing 454 n n C4 C2 XZJ sing 455 n n C2 C1 XZJ sing 456 n n C2 C3 XZJ sing 457 n n C1 H1 XZJ sing 458 n n C1 H2 XZJ sing 459 n n C1 H3 XZJ sing 460 n n C12 H4 XZJ sing 461 n n C12 H5 XZJ sing 462 n n C13 H6 XZJ sing 463 n n C13 H7 XZJ sing 464 n n C16 H8 XZJ sing 465 n n C16 H9 XZJ sing 466 n n C16 H10 XZJ sing 467 n n C17 H11 XZJ sing 468 n n C17 H12 XZJ sing 469 n n C17 H13 XZJ sing 470 n n C18 H14 XZJ sing 471 n n C18 H15 XZJ sing 472 n n C18 H16 XZJ sing 473 n n C19 H17 XZJ sing 474 n n C19 H18 XZJ sing 475 n n C2 H19 XZJ sing 476 n n C20 H20 XZJ sing 477 n n C21 H21 XZJ sing 478 n n C21 H22 XZJ sing 479 n n C21 H23 XZJ sing 480 n n C22 H24 XZJ sing 481 n n C22 H25 XZJ sing 482 n n C22 H26 XZJ sing 483 n n C3 H27 XZJ sing 484 n n C3 H28 XZJ sing 485 n n C3 H29 XZJ sing 486 n n C4 H30 XZJ sing 487 n n C4 H31 XZJ sing 488 n n C5 H32 XZJ sing 489 n n C6 H33 XZJ sing 490 n n C6 H34 XZJ sing 491 n n C7 H35 XZJ sing 492 n n C9 H37 XZJ sing 493 n n O3 H38 XZJ sing 494 n n C9 H36 XZJ sing 495 n n # _atom_sites.entry_id 7LF3 _atom_sites.fract_transf_matrix[1][1] 0.028643 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001283 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.038546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 2 ZN A 1 302 2 ZN ZN . D 3 XZJ A 1 303 1 XZJ AJH . E 4 XP5 A 1 304 1 XP5 LIG . F 5 HOH A 1 401 25 HOH HOH . F 5 HOH A 2 402 55 HOH HOH . F 5 HOH A 3 403 43 HOH HOH . F 5 HOH A 4 404 26 HOH HOH . F 5 HOH A 5 405 23 HOH HOH . F 5 HOH A 6 406 19 HOH HOH . F 5 HOH A 7 407 39 HOH HOH . F 5 HOH A 8 408 14 HOH HOH . F 5 HOH A 9 409 47 HOH HOH . F 5 HOH A 10 410 12 HOH HOH . F 5 HOH A 11 411 27 HOH HOH . F 5 HOH A 12 412 33 HOH HOH . F 5 HOH A 13 413 54 HOH HOH . F 5 HOH A 14 414 46 HOH HOH . F 5 HOH A 15 415 2 HOH HOH . F 5 HOH A 16 416 5 HOH HOH . F 5 HOH A 17 417 57 HOH HOH . F 5 HOH A 18 418 28 HOH HOH . F 5 HOH A 19 419 29 HOH HOH . F 5 HOH A 20 420 1 HOH HOH . F 5 HOH A 21 421 22 HOH HOH . F 5 HOH A 22 422 35 HOH HOH . F 5 HOH A 23 423 38 HOH HOH . F 5 HOH A 24 424 15 HOH HOH . F 5 HOH A 25 425 8 HOH HOH . F 5 HOH A 26 426 24 HOH HOH . F 5 HOH A 27 427 4 HOH HOH . F 5 HOH A 28 428 20 HOH HOH . F 5 HOH A 29 429 16 HOH HOH . F 5 HOH A 30 430 11 HOH HOH . F 5 HOH A 31 431 56 HOH HOH . F 5 HOH A 32 432 50 HOH HOH . F 5 HOH A 33 433 13 HOH HOH . F 5 HOH A 34 434 58 HOH HOH . F 5 HOH A 35 435 6 HOH HOH . F 5 HOH A 36 436 36 HOH HOH . F 5 HOH A 37 437 3 HOH HOH . F 5 HOH A 38 438 34 HOH HOH . F 5 HOH A 39 439 30 HOH HOH . F 5 HOH A 40 440 52 HOH HOH . F 5 HOH A 41 441 40 HOH HOH . F 5 HOH A 42 442 51 HOH HOH . F 5 HOH A 43 443 10 HOH HOH . F 5 HOH A 44 444 41 HOH HOH . F 5 HOH A 45 445 9 HOH HOH . F 5 HOH A 46 446 21 HOH HOH . F 5 HOH A 47 447 60 HOH HOH . F 5 HOH A 48 448 48 HOH HOH . F 5 HOH A 49 449 37 HOH HOH . F 5 HOH A 50 450 44 HOH HOH . F 5 HOH A 51 451 53 HOH HOH . F 5 HOH A 52 452 45 HOH HOH . F 5 HOH A 53 453 7 HOH HOH . F 5 HOH A 54 454 18 HOH HOH . F 5 HOH A 55 455 61 HOH HOH . F 5 HOH A 56 456 62 HOH HOH . F 5 HOH A 57 457 32 HOH HOH . F 5 HOH A 58 458 49 HOH HOH . F 5 HOH A 59 459 42 HOH HOH . F 5 HOH A 60 460 17 HOH HOH . F 5 HOH A 61 461 31 HOH HOH . F 5 HOH A 62 462 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XZJ . . . D 3 -9.807 2.854 3.403 1 23.46 ? C1 XZJ 303 A 1 HETATM 2 C C10 XZJ . . . D 3 -1.689 -0.105 4.269 1 17.72 ? C10 XZJ 303 A 1 HETATM 3 C C11 XZJ . . . D 3 -1.639 1.381 2.464 1 18.44 ? C11 XZJ 303 A 1 HETATM 4 C C12 XZJ . . . D 3 -1.135 0.219 5.649 1 17.15 ? C12 XZJ 303 A 1 HETATM 5 C C13 XZJ . . . D 3 -1.588 -1.593 3.983 1 17.89 ? C13 XZJ 303 A 1 HETATM 6 C C14 XZJ . . . D 3 -2.468 -3.039 2.335 1 19.45 ? C14 XZJ 303 A 1 HETATM 7 C C15 XZJ . . . D 3 -3.126 -3.147 0.978 1 20.76 ? C15 XZJ 303 A 1 HETATM 8 C C16 XZJ . . . D 3 -2.58 -4.396 0.295 1 20.94 ? C16 XZJ 303 A 1 HETATM 9 C C17 XZJ . . . D 3 -2.844 -1.914 0.126 1 21.19 ? C17 XZJ 303 A 1 HETATM 10 C C18 XZJ . . . D 3 -4.629 -3.29 1.183 1 21.19 ? C18 XZJ 303 A 1 HETATM 11 C C19 XZJ . . . D 3 -6.213 0.569 0.669 1 21.81 ? C19 XZJ 303 A 1 HETATM 12 C C2 XZJ . . . D 3 -8.354 2.963 2.97 1 22.94 ? C2 XZJ 303 A 1 HETATM 13 C C20 XZJ . . . D 3 -7.138 0.371 -0.542 1 22.55 ? C20 XZJ 303 A 1 HETATM 14 C C21 XZJ . . . D 3 -6.71 -0.85 -1.341 1 23.02 ? C21 XZJ 303 A 1 HETATM 15 C C22 XZJ . . . D 3 -7.166 1.605 -1.434 1 22.89 ? C22 XZJ 303 A 1 HETATM 16 C C3 XZJ . . . D 3 -8.112 4.273 2.239 1 23.02 ? C3 XZJ 303 A 1 HETATM 17 C C4 XZJ . . . D 3 -7.941 1.759 2.117 1 22.07 ? C4 XZJ 303 A 1 HETATM 18 C C5 XZJ . . . D 3 -6.502 1.786 1.569 1 21.5 ? C5 XZJ 303 A 1 HETATM 19 C C6 XZJ . . . D 3 -5.497 1.846 2.729 1 20.63 ? C6 XZJ 303 A 1 HETATM 20 C C7 XZJ . . . D 3 -4.058 1.938 2.284 1 19.5 ? C7 XZJ 303 A 1 HETATM 21 C C8 XZJ . . . D 3 -3.039 1.311 2.883 1 18.52 ? C8 XZJ 303 A 1 HETATM 22 C C9 XZJ . . . D 3 -3.119 0.413 4.08 1 18.05 ? C9 XZJ 303 A 1 HETATM 23 O O1 XZJ . . . D 3 -0.878 0.589 3.258 1 17.82 ? O1 XZJ 303 A 1 HETATM 24 O O2 XZJ . . . D 3 -1.145 2.002 1.565 1 18.86 ? O2 XZJ 303 A 1 HETATM 25 O O3 XZJ . . . D 3 0.163 -0.305 5.86 1 17.21 ? O3 XZJ 303 A 1 HETATM 26 O O4 XZJ . . . D 3 -2.094 -1.781 2.651 1 18.28 ? O4 XZJ 303 A 1 HETATM 27 O O5 XZJ . . . D 3 -2.321 -3.966 3.078 1 19.4 ? O5 XZJ 303 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #