data_7LF3
#
_model_server_result.job_id            oHt8LkyqQx7JSVmetWxDLw 
_model_server_result.datetime_utc      '2024-11-05 16:28:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lf3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    7LF3 
#
_exptl.entry_id    7LF3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              382.534 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '{(2R,4E)-2-(hydroxymethyl)-4-[5-methyl-3-(2-methylpropyl)hexylidene]-5-oxooxolan-2-yl}methyl 2,2-dimethylpropanoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.57 
_cell.angle_gamma         90 
_cell.entry_id            7LF3 
_cell.length_a            34.913 
_cell.length_b            25.943 
_cell.length_c            57.642 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LF3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 3 A HIS 231 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc2 A SG CYS 16 A CYS 244 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc3 A SG CYS 19 A CYS 247 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc4 A SG CYS 33 A CYS 261 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc5 A SG CYS 36 A CYS 264 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc6 A ND1 HIS 41 A HIS 269 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc7 A SG CYS 44 A CYS 272 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc8 A SG CYS 52 A CYS 280 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
#
_chem_comp.formula           'C22 H38 O5' 
_chem_comp.formula_weight    382.534 
_chem_comp.id                XZJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '{(2R,4E)-2-(hydroxymethyl)-4-[5-methyl-3-(2-methylpropyl)hexylidene]-5-oxooxolan-2-yl}methyl 2,2-dimethylpropanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     AJH-836 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C12 XZJ sing 431 n n 
O5 C14 XZJ doub 432 n n 
C13 O4 XZJ sing 433 n n 
C13 C10 XZJ sing 434 n n 
C12 C10 XZJ sing 435 n n 
C16 C15 XZJ sing 436 n n 
C14 O4 XZJ sing 437 n n 
C14 C15 XZJ sing 438 n n 
O1 C10 XZJ sing 439 n n 
O1 C11 XZJ sing 440 n n 
C10 C9 XZJ sing 441 n n 
C15 C17 XZJ sing 442 n n 
C15 C18 XZJ sing 443 n n 
C11 O2 XZJ doub 444 n n 
C11 C8 XZJ sing 445 n n 
C9 C8 XZJ sing 446 n n 
C8 C7 XZJ doub 447 e n 
C7 C6 XZJ sing 448 n n 
C6 C5 XZJ sing 449 n n 
C22 C20 XZJ sing 450 n n 
C19 C20 XZJ sing 451 n n 
C19 C5 XZJ sing 452 n n 
C20 C21 XZJ sing 453 n n 
C5 C4 XZJ sing 454 n n 
C4 C2 XZJ sing 455 n n 
C2 C1 XZJ sing 456 n n 
C2 C3 XZJ sing 457 n n 
C1 H1 XZJ sing 458 n n 
C1 H2 XZJ sing 459 n n 
C1 H3 XZJ sing 460 n n 
C12 H4 XZJ sing 461 n n 
C12 H5 XZJ sing 462 n n 
C13 H6 XZJ sing 463 n n 
C13 H7 XZJ sing 464 n n 
C16 H8 XZJ sing 465 n n 
C16 H9 XZJ sing 466 n n 
C16 H10 XZJ sing 467 n n 
C17 H11 XZJ sing 468 n n 
C17 H12 XZJ sing 469 n n 
C17 H13 XZJ sing 470 n n 
C18 H14 XZJ sing 471 n n 
C18 H15 XZJ sing 472 n n 
C18 H16 XZJ sing 473 n n 
C19 H17 XZJ sing 474 n n 
C19 H18 XZJ sing 475 n n 
C2 H19 XZJ sing 476 n n 
C20 H20 XZJ sing 477 n n 
C21 H21 XZJ sing 478 n n 
C21 H22 XZJ sing 479 n n 
C21 H23 XZJ sing 480 n n 
C22 H24 XZJ sing 481 n n 
C22 H25 XZJ sing 482 n n 
C22 H26 XZJ sing 483 n n 
C3 H27 XZJ sing 484 n n 
C3 H28 XZJ sing 485 n n 
C3 H29 XZJ sing 486 n n 
C4 H30 XZJ sing 487 n n 
C4 H31 XZJ sing 488 n n 
C5 H32 XZJ sing 489 n n 
C6 H33 XZJ sing 490 n n 
C6 H34 XZJ sing 491 n n 
C7 H35 XZJ sing 492 n n 
C9 H37 XZJ sing 493 n n 
O3 H38 XZJ sing 494 n n 
C9 H36 XZJ sing 495 n n 
#
_atom_sites.entry_id                     7LF3 
_atom_sites.fract_transf_matrix[1][1]    0.028643 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001283 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.038546 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017366 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 1 ZN ZN . 
C 2 ZN A 1 302 2 ZN ZN . 
D 3 XZJ A 1 303 1 XZJ AJH . 
E 4 XP5 A 1 304 1 XP5 LIG . 
F 5 HOH A 1 401 25 HOH HOH . 
F 5 HOH A 2 402 55 HOH HOH . 
F 5 HOH A 3 403 43 HOH HOH . 
F 5 HOH A 4 404 26 HOH HOH . 
F 5 HOH A 5 405 23 HOH HOH . 
F 5 HOH A 6 406 19 HOH HOH . 
F 5 HOH A 7 407 39 HOH HOH . 
F 5 HOH A 8 408 14 HOH HOH . 
F 5 HOH A 9 409 47 HOH HOH . 
F 5 HOH A 10 410 12 HOH HOH . 
F 5 HOH A 11 411 27 HOH HOH . 
F 5 HOH A 12 412 33 HOH HOH . 
F 5 HOH A 13 413 54 HOH HOH . 
F 5 HOH A 14 414 46 HOH HOH . 
F 5 HOH A 15 415 2 HOH HOH . 
F 5 HOH A 16 416 5 HOH HOH . 
F 5 HOH A 17 417 57 HOH HOH . 
F 5 HOH A 18 418 28 HOH HOH . 
F 5 HOH A 19 419 29 HOH HOH . 
F 5 HOH A 20 420 1 HOH HOH . 
F 5 HOH A 21 421 22 HOH HOH . 
F 5 HOH A 22 422 35 HOH HOH . 
F 5 HOH A 23 423 38 HOH HOH . 
F 5 HOH A 24 424 15 HOH HOH . 
F 5 HOH A 25 425 8 HOH HOH . 
F 5 HOH A 26 426 24 HOH HOH . 
F 5 HOH A 27 427 4 HOH HOH . 
F 5 HOH A 28 428 20 HOH HOH . 
F 5 HOH A 29 429 16 HOH HOH . 
F 5 HOH A 30 430 11 HOH HOH . 
F 5 HOH A 31 431 56 HOH HOH . 
F 5 HOH A 32 432 50 HOH HOH . 
F 5 HOH A 33 433 13 HOH HOH . 
F 5 HOH A 34 434 58 HOH HOH . 
F 5 HOH A 35 435 6 HOH HOH . 
F 5 HOH A 36 436 36 HOH HOH . 
F 5 HOH A 37 437 3 HOH HOH . 
F 5 HOH A 38 438 34 HOH HOH . 
F 5 HOH A 39 439 30 HOH HOH . 
F 5 HOH A 40 440 52 HOH HOH . 
F 5 HOH A 41 441 40 HOH HOH . 
F 5 HOH A 42 442 51 HOH HOH . 
F 5 HOH A 43 443 10 HOH HOH . 
F 5 HOH A 44 444 41 HOH HOH . 
F 5 HOH A 45 445 9 HOH HOH . 
F 5 HOH A 46 446 21 HOH HOH . 
F 5 HOH A 47 447 60 HOH HOH . 
F 5 HOH A 48 448 48 HOH HOH . 
F 5 HOH A 49 449 37 HOH HOH . 
F 5 HOH A 50 450 44 HOH HOH . 
F 5 HOH A 51 451 53 HOH HOH . 
F 5 HOH A 52 452 45 HOH HOH . 
F 5 HOH A 53 453 7 HOH HOH . 
F 5 HOH A 54 454 18 HOH HOH . 
F 5 HOH A 55 455 61 HOH HOH . 
F 5 HOH A 56 456 62 HOH HOH . 
F 5 HOH A 57 457 32 HOH HOH . 
F 5 HOH A 58 458 49 HOH HOH . 
F 5 HOH A 59 459 42 HOH HOH . 
F 5 HOH A 60 460 17 HOH HOH . 
F 5 HOH A 61 461 31 HOH HOH . 
F 5 HOH A 62 462 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 XZJ . . . D 3 -9.807 2.854 3.403 1 23.46 ? C1 XZJ 303 A 1 
HETATM 2 C C10 XZJ . . . D 3 -1.689 -0.105 4.269 1 17.72 ? C10 XZJ 303 A 1 
HETATM 3 C C11 XZJ . . . D 3 -1.639 1.381 2.464 1 18.44 ? C11 XZJ 303 A 1 
HETATM 4 C C12 XZJ . . . D 3 -1.135 0.219 5.649 1 17.15 ? C12 XZJ 303 A 1 
HETATM 5 C C13 XZJ . . . D 3 -1.588 -1.593 3.983 1 17.89 ? C13 XZJ 303 A 1 
HETATM 6 C C14 XZJ . . . D 3 -2.468 -3.039 2.335 1 19.45 ? C14 XZJ 303 A 1 
HETATM 7 C C15 XZJ . . . D 3 -3.126 -3.147 0.978 1 20.76 ? C15 XZJ 303 A 1 
HETATM 8 C C16 XZJ . . . D 3 -2.58 -4.396 0.295 1 20.94 ? C16 XZJ 303 A 1 
HETATM 9 C C17 XZJ . . . D 3 -2.844 -1.914 0.126 1 21.19 ? C17 XZJ 303 A 1 
HETATM 10 C C18 XZJ . . . D 3 -4.629 -3.29 1.183 1 21.19 ? C18 XZJ 303 A 1 
HETATM 11 C C19 XZJ . . . D 3 -6.213 0.569 0.669 1 21.81 ? C19 XZJ 303 A 1 
HETATM 12 C C2 XZJ . . . D 3 -8.354 2.963 2.97 1 22.94 ? C2 XZJ 303 A 1 
HETATM 13 C C20 XZJ . . . D 3 -7.138 0.371 -0.542 1 22.55 ? C20 XZJ 303 A 1 
HETATM 14 C C21 XZJ . . . D 3 -6.71 -0.85 -1.341 1 23.02 ? C21 XZJ 303 A 1 
HETATM 15 C C22 XZJ . . . D 3 -7.166 1.605 -1.434 1 22.89 ? C22 XZJ 303 A 1 
HETATM 16 C C3 XZJ . . . D 3 -8.112 4.273 2.239 1 23.02 ? C3 XZJ 303 A 1 
HETATM 17 C C4 XZJ . . . D 3 -7.941 1.759 2.117 1 22.07 ? C4 XZJ 303 A 1 
HETATM 18 C C5 XZJ . . . D 3 -6.502 1.786 1.569 1 21.5 ? C5 XZJ 303 A 1 
HETATM 19 C C6 XZJ . . . D 3 -5.497 1.846 2.729 1 20.63 ? C6 XZJ 303 A 1 
HETATM 20 C C7 XZJ . . . D 3 -4.058 1.938 2.284 1 19.5 ? C7 XZJ 303 A 1 
HETATM 21 C C8 XZJ . . . D 3 -3.039 1.311 2.883 1 18.52 ? C8 XZJ 303 A 1 
HETATM 22 C C9 XZJ . . . D 3 -3.119 0.413 4.08 1 18.05 ? C9 XZJ 303 A 1 
HETATM 23 O O1 XZJ . . . D 3 -0.878 0.589 3.258 1 17.82 ? O1 XZJ 303 A 1 
HETATM 24 O O2 XZJ . . . D 3 -1.145 2.002 1.565 1 18.86 ? O2 XZJ 303 A 1 
HETATM 25 O O3 XZJ . . . D 3 0.163 -0.305 5.86 1 17.21 ? O3 XZJ 303 A 1 
HETATM 26 O O4 XZJ . . . D 3 -2.094 -1.781 2.651 1 18.28 ? O4 XZJ 303 A 1 
HETATM 27 O O5 XZJ . . . D 3 -2.321 -3.966 3.078 1 19.4 ? O5 XZJ 303 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           378 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#