data_7LF3
#
_model_server_result.job_id            SAwo1J6yClAjZAqIxTWVGg 
_model_server_result.datetime_utc      '2024-11-05 16:27:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lf3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    7LF3 
#
_exptl.entry_id    7LF3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              482.568 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(4S,7R)-7-(heptanoyloxy)-4-hydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphahexadecan-1-aminium 4-oxide' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.57 
_cell.angle_gamma         90 
_cell.entry_id            7LF3 
_cell.length_a            34.913 
_cell.length_b            25.943 
_cell.length_c            57.642 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LF3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 3 A HIS 231 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc2 A SG CYS 16 A CYS 244 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc3 A SG CYS 19 A CYS 247 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc4 A SG CYS 33 A CYS 261 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc5 A SG CYS 36 A CYS 264 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc6 A ND1 HIS 41 A HIS 269 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc7 A SG CYS 44 A CYS 272 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc8 A SG CYS 52 A CYS 280 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
#
_chem_comp.formula           'C22 H45 N O8 P 1' 
_chem_comp.formula_weight    482.568 
_chem_comp.id                XP5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(4S,7R)-7-(heptanoyloxy)-4-hydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphahexadecan-1-aminium 4-oxide' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 XP5 doub 355 n n 
O2 P1 XP5 sing 356 n n 
P1 O3 XP5 sing 357 n n 
P1 O4 XP5 sing 358 n n 
O3 C1 XP5 sing 359 n n 
C1 C2 XP5 sing 360 n n 
C2 N1 XP5 sing 361 n n 
N1 C3 XP5 sing 362 n n 
N1 C4 XP5 sing 363 n n 
N1 C5 XP5 sing 364 n n 
O4 C6 XP5 sing 365 n n 
C6 CAM XP5 sing 366 n n 
C8 O5 XP5 sing 367 n n 
C8 CAM XP5 sing 368 n n 
O5 C9 XP5 sing 369 n n 
C9 O6 XP5 doub 370 n n 
C9 C10 XP5 sing 371 n n 
C10 C11 XP5 sing 372 n n 
C11 C12 XP5 sing 373 n n 
C12 C13 XP5 sing 374 n n 
C13 C14 XP5 sing 375 n n 
C14 C15 XP5 sing 376 n n 
O7 C17 XP5 doub 377 n n 
C17 O8 XP5 sing 378 n n 
C17 C18 XP5 sing 379 n n 
O8 CAM XP5 sing 380 n n 
C18 C19 XP5 sing 381 n n 
C19 C20 XP5 sing 382 n n 
C20 C21 XP5 sing 383 n n 
C21 C22 XP5 sing 384 n n 
C22 C23 XP5 sing 385 n n 
O2 H2 XP5 sing 386 n n 
C1 H11C XP5 sing 387 n n 
C1 H12C XP5 sing 388 n n 
C2 H21C XP5 sing 389 n n 
C2 H22C XP5 sing 390 n n 
C3 H31C XP5 sing 391 n n 
C3 H32C XP5 sing 392 n n 
C3 H33C XP5 sing 393 n n 
C4 H41C XP5 sing 394 n n 
C4 H42C XP5 sing 395 n n 
C4 H43C XP5 sing 396 n n 
C5 H51C XP5 sing 397 n n 
C5 H52C XP5 sing 398 n n 
C5 H53C XP5 sing 399 n n 
C6 H61C XP5 sing 400 n n 
C6 H62C XP5 sing 401 n n 
CAM HAM XP5 sing 402 n n 
C8 H81C XP5 sing 403 n n 
C8 H82C XP5 sing 404 n n 
C10 H101 XP5 sing 405 n n 
C10 H102 XP5 sing 406 n n 
C11 H111 XP5 sing 407 n n 
C11 H112 XP5 sing 408 n n 
C12 H121 XP5 sing 409 n n 
C12 H122 XP5 sing 410 n n 
C13 H131 XP5 sing 411 n n 
C13 H132 XP5 sing 412 n n 
C14 H141 XP5 sing 413 n n 
C14 H142 XP5 sing 414 n n 
C15 H151 XP5 sing 415 n n 
C15 H152 XP5 sing 416 n n 
C15 H153 XP5 sing 417 n n 
C18 H181 XP5 sing 418 n n 
C18 H182 XP5 sing 419 n n 
C19 H191 XP5 sing 420 n n 
C19 H192 XP5 sing 421 n n 
C20 H201 XP5 sing 422 n n 
C20 H202 XP5 sing 423 n n 
C21 H211 XP5 sing 424 n n 
C21 H212 XP5 sing 425 n n 
C22 H221 XP5 sing 426 n n 
C22 H222 XP5 sing 427 n n 
C23 H231 XP5 sing 428 n n 
C23 H232 XP5 sing 429 n n 
C23 H233 XP5 sing 430 n n 
#
_atom_sites.entry_id                     7LF3 
_atom_sites.fract_transf_matrix[1][1]    0.028643 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001283 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.038546 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017366 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 1 ZN ZN . 
C 2 ZN A 1 302 2 ZN ZN . 
D 3 XZJ A 1 303 1 XZJ AJH . 
E 4 XP5 A 1 304 1 XP5 LIG . 
F 5 HOH A 1 401 25 HOH HOH . 
F 5 HOH A 2 402 55 HOH HOH . 
F 5 HOH A 3 403 43 HOH HOH . 
F 5 HOH A 4 404 26 HOH HOH . 
F 5 HOH A 5 405 23 HOH HOH . 
F 5 HOH A 6 406 19 HOH HOH . 
F 5 HOH A 7 407 39 HOH HOH . 
F 5 HOH A 8 408 14 HOH HOH . 
F 5 HOH A 9 409 47 HOH HOH . 
F 5 HOH A 10 410 12 HOH HOH . 
F 5 HOH A 11 411 27 HOH HOH . 
F 5 HOH A 12 412 33 HOH HOH . 
F 5 HOH A 13 413 54 HOH HOH . 
F 5 HOH A 14 414 46 HOH HOH . 
F 5 HOH A 15 415 2 HOH HOH . 
F 5 HOH A 16 416 5 HOH HOH . 
F 5 HOH A 17 417 57 HOH HOH . 
F 5 HOH A 18 418 28 HOH HOH . 
F 5 HOH A 19 419 29 HOH HOH . 
F 5 HOH A 20 420 1 HOH HOH . 
F 5 HOH A 21 421 22 HOH HOH . 
F 5 HOH A 22 422 35 HOH HOH . 
F 5 HOH A 23 423 38 HOH HOH . 
F 5 HOH A 24 424 15 HOH HOH . 
F 5 HOH A 25 425 8 HOH HOH . 
F 5 HOH A 26 426 24 HOH HOH . 
F 5 HOH A 27 427 4 HOH HOH . 
F 5 HOH A 28 428 20 HOH HOH . 
F 5 HOH A 29 429 16 HOH HOH . 
F 5 HOH A 30 430 11 HOH HOH . 
F 5 HOH A 31 431 56 HOH HOH . 
F 5 HOH A 32 432 50 HOH HOH . 
F 5 HOH A 33 433 13 HOH HOH . 
F 5 HOH A 34 434 58 HOH HOH . 
F 5 HOH A 35 435 6 HOH HOH . 
F 5 HOH A 36 436 36 HOH HOH . 
F 5 HOH A 37 437 3 HOH HOH . 
F 5 HOH A 38 438 34 HOH HOH . 
F 5 HOH A 39 439 30 HOH HOH . 
F 5 HOH A 40 440 52 HOH HOH . 
F 5 HOH A 41 441 40 HOH HOH . 
F 5 HOH A 42 442 51 HOH HOH . 
F 5 HOH A 43 443 10 HOH HOH . 
F 5 HOH A 44 444 41 HOH HOH . 
F 5 HOH A 45 445 9 HOH HOH . 
F 5 HOH A 46 446 21 HOH HOH . 
F 5 HOH A 47 447 60 HOH HOH . 
F 5 HOH A 48 448 48 HOH HOH . 
F 5 HOH A 49 449 37 HOH HOH . 
F 5 HOH A 50 450 44 HOH HOH . 
F 5 HOH A 51 451 53 HOH HOH . 
F 5 HOH A 52 452 45 HOH HOH . 
F 5 HOH A 53 453 7 HOH HOH . 
F 5 HOH A 54 454 18 HOH HOH . 
F 5 HOH A 55 455 61 HOH HOH . 
F 5 HOH A 56 456 62 HOH HOH . 
F 5 HOH A 57 457 32 HOH HOH . 
F 5 HOH A 58 458 49 HOH HOH . 
F 5 HOH A 59 459 42 HOH HOH . 
F 5 HOH A 60 460 17 HOH HOH . 
F 5 HOH A 61 461 31 HOH HOH . 
F 5 HOH A 62 462 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 XP5 . . . E 4 -9.126 -6.434 7.663 1 97.78 ? O1 XP5 304 A 1 
HETATM 2 O O2 XP5 . . . E 4 -8.971 -4.656 5.98 1 39.81 -1 O2 XP5 304 A 1 
HETATM 3 P P1 XP5 . . . E 4 -9.647 -5.96 6.327 1 169.09 ? P1 XP5 304 A 1 
HETATM 4 O O3 XP5 . . . E 4 -9.273 -7.073 5.168 1 103.61 ? O3 XP5 304 A 1 
HETATM 5 C C1 XP5 . . . E 4 -8.089 -7.812 5.3 1 65.06 ? C1 XP5 304 A 1 
HETATM 6 C C2 XP5 . . . E 4 -7.147 -7.43 4.155 1 72.29 ? C2 XP5 304 A 1 
HETATM 7 N N1 XP5 . . . E 4 -5.958 -8.271 4.104 1 76.83 ? N1 XP5 304 A 1 
HETATM 8 C C3 XP5 . . . E 4 -6.329 -9.612 3.688 1 76.27 ? C3 XP5 304 A 1 
HETATM 9 C C4 XP5 . . . E 4 -5.317 -8.333 5.408 1 58.8 ? C4 XP5 304 A 1 
HETATM 10 C C5 XP5 . . . E 4 -5.022 -7.713 3.145 1 45.53 ? C5 XP5 304 A 1 
HETATM 11 O O4 XP5 . . . E 4 -11.281 -5.716 6.416 1 97.66 ? O4 XP5 304 A 1 
HETATM 12 C C6 XP5 . . . E 4 -11.902 -4.917 5.445 1 69.69 ? C6 XP5 304 A 1 
HETATM 13 C C8 XP5 . . . E 4 -13.776 -3.365 4.919 1 70.98 ? C8 XP5 304 A 1 
HETATM 14 O O5 XP5 . . . E 4 -14.28 -2.128 5.335 1 96.03 ? O5 XP5 304 A 1 
HETATM 15 C C9 XP5 . . . E 4 -13.894 -1.053 4.526 1 76.09 ? C9 XP5 304 A 1 
HETATM 16 O O6 XP5 . . . E 4 -12.842 -1.075 3.981 1 99.06 ? O6 XP5 304 A 1 
HETATM 17 C C10 XP5 . . . E 4 -14.819 0.148 4.344 1 55.92 ? C10 XP5 304 A 1 
HETATM 18 O O7 XP5 . . . E 4 -14.177 -3.099 8.422 1 94.34 ? O7 XP5 304 A 1 
HETATM 19 C C17 XP5 . . . E 4 -14.659 -3.898 7.69 1 81.2 ? C17 XP5 304 A 1 
HETATM 20 O O8 XP5 . . . E 4 -13.839 -4.711 6.896 1 97.53 ? O8 XP5 304 A 1 
HETATM 21 C C18 XP5 . . . E 4 -16.178 -4.023 7.608 1 67.61 ? C18 XP5 304 A 1 
HETATM 22 C CAM XP5 . . . E 4 -12.97 -4 6.056 1 76.53 ? CAM XP5 304 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           22 
#