data_7LF8 # _model_server_result.job_id L9lDamisfF1_Tjbakm5H9Q _model_server_result.datetime_utc '2024-10-20 20:28:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 7LF8 # _exptl.entry_id 7LF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LF8 _cell.length_a 97.903 _cell.length_b 154.29 _cell.length_c 88.054 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 B SG CYS 148 H CYS 148 1_555 B SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf4 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? covale ? covale1 B C SER 55 H SER 55 1_555 B N TPO 56 H TPO 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 B C TPO 56 H TPO 56 1_555 B N TYR 57 H TYR 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7LF8 _atom_sites.fract_transf_matrix[1][1] 0.010214 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PO4 L 1 301 1 PO4 PO4 . E 5 GOL L 1 302 1 GOL GOL . F 6 HOH A 1 201 54 HOH HOH . F 6 HOH A 2 202 59 HOH HOH . F 6 HOH A 3 203 67 HOH HOH . F 6 HOH A 4 204 19 HOH HOH . F 6 HOH A 5 205 28 HOH HOH . F 6 HOH A 6 206 77 HOH HOH . G 6 HOH H 1 301 9 HOH HOH . G 6 HOH H 2 302 57 HOH HOH . G 6 HOH H 3 303 18 HOH HOH . G 6 HOH H 4 304 42 HOH HOH . G 6 HOH H 5 305 66 HOH HOH . G 6 HOH H 6 306 49 HOH HOH . G 6 HOH H 7 307 46 HOH HOH . G 6 HOH H 8 308 12 HOH HOH . G 6 HOH H 9 309 2 HOH HOH . G 6 HOH H 10 310 36 HOH HOH . G 6 HOH H 11 311 33 HOH HOH . G 6 HOH H 12 312 44 HOH HOH . G 6 HOH H 13 313 38 HOH HOH . G 6 HOH H 14 314 23 HOH HOH . G 6 HOH H 15 315 16 HOH HOH . G 6 HOH H 16 316 25 HOH HOH . G 6 HOH H 17 317 53 HOH HOH . G 6 HOH H 18 318 5 HOH HOH . G 6 HOH H 19 319 24 HOH HOH . G 6 HOH H 20 320 26 HOH HOH . G 6 HOH H 21 321 74 HOH HOH . G 6 HOH H 22 322 31 HOH HOH . G 6 HOH H 23 323 71 HOH HOH . G 6 HOH H 24 324 64 HOH HOH . G 6 HOH H 25 325 68 HOH HOH . G 6 HOH H 26 326 72 HOH HOH . G 6 HOH H 27 327 79 HOH HOH . G 6 HOH H 28 328 73 HOH HOH . H 6 HOH L 1 401 17 HOH HOH . H 6 HOH L 2 402 51 HOH HOH . H 6 HOH L 3 403 1 HOH HOH . H 6 HOH L 4 404 37 HOH HOH . H 6 HOH L 5 405 32 HOH HOH . H 6 HOH L 6 406 35 HOH HOH . H 6 HOH L 7 407 65 HOH HOH . H 6 HOH L 8 408 47 HOH HOH . H 6 HOH L 9 409 40 HOH HOH . H 6 HOH L 10 410 8 HOH HOH . H 6 HOH L 11 411 41 HOH HOH . H 6 HOH L 12 412 21 HOH HOH . H 6 HOH L 13 413 30 HOH HOH . H 6 HOH L 14 414 4 HOH HOH . H 6 HOH L 15 415 48 HOH HOH . H 6 HOH L 16 416 11 HOH HOH . H 6 HOH L 17 417 52 HOH HOH . H 6 HOH L 18 418 3 HOH HOH . H 6 HOH L 19 419 61 HOH HOH . H 6 HOH L 20 420 13 HOH HOH . H 6 HOH L 21 421 34 HOH HOH . H 6 HOH L 22 422 43 HOH HOH . H 6 HOH L 23 423 14 HOH HOH . H 6 HOH L 24 424 27 HOH HOH . H 6 HOH L 25 425 15 HOH HOH . H 6 HOH L 26 426 60 HOH HOH . H 6 HOH L 27 427 55 HOH HOH . H 6 HOH L 28 428 20 HOH HOH . H 6 HOH L 29 429 63 HOH HOH . H 6 HOH L 30 430 69 HOH HOH . H 6 HOH L 31 431 75 HOH HOH . H 6 HOH L 32 432 76 HOH HOH . H 6 HOH L 33 433 45 HOH HOH . H 6 HOH L 34 434 22 HOH HOH . H 6 HOH L 35 435 7 HOH HOH . H 6 HOH L 36 436 78 HOH HOH . H 6 HOH L 37 437 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 15.067 -4.465 124.077 1 72.03 ? C1 GOL 302 L 1 HETATM 2 O O1 GOL . . . E 5 14.794 -3.113 124.415 1 82.74 ? O1 GOL 302 L 1 HETATM 3 C C2 GOL . . . E 5 16.501 -4.82 124.393 1 69.05 ? C2 GOL 302 L 1 HETATM 4 O O2 GOL . . . E 5 16.568 -6.157 124.882 1 74.73 ? O2 GOL 302 L 1 HETATM 5 C C3 GOL . . . E 5 17.377 -4.681 123.169 1 71.19 ? C3 GOL 302 L 1 HETATM 6 O O3 GOL . . . E 5 18.746 -4.463 123.511 1 63.07 ? O3 GOL 302 L 1 HETATM 7 H H11 GOL . . . E 5 14.379 -5.133 124.593 1 72 ? H11 GOL 302 L 1 HETATM 8 H H12 GOL . . . E 5 14.877 -4.617 123.016 1 72 ? H12 GOL 302 L 1 HETATM 9 H HO1 GOL . . . E 5 13.876 -2.93 124.083 1 82.86 ? HO1 GOL 302 L 1 HETATM 10 H H2 GOL . . . E 5 16.879 -4.288 125.262 1 68.96 ? H2 GOL 302 L 1 HETATM 11 H HO2 GOL . . . E 5 16.383 -6.772 124.125 1 74.77 ? HO2 GOL 302 L 1 HETATM 12 H H31 GOL . . . E 5 17.292 -5.566 122.54 1 71.24 ? H31 GOL 302 L 1 HETATM 13 H H32 GOL . . . E 5 17.001 -3.866 122.553 1 71.24 ? H32 GOL 302 L 1 HETATM 14 H HO3 GOL . . . E 5 19.279 -4.884 122.787 1 63.04 ? HO3 GOL 302 L 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #