data_7LFD
#
_model_server_result.job_id            V7KhF5vFYYJbCBI6wSVJqQ 
_model_server_result.datetime_utc      '2024-11-25 10:07:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lfd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":303}' 
#
_entry.id    7LFD 
#
_exptl.entry_id    7LFD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7LFD 
_cell.length_a            129.947 
_cell.length_b            129.947 
_cell.length_c            90.817 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LFD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
? 6 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 B SG CYS 148 H CYS 148 1_555 B SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 B SG CYS 224 H CYS 224 1_555 C SG CYS 214 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf5 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 154 n n 
C1 C2 GOL sing 155 n n 
C1 H11 GOL sing 156 n n 
C1 H12 GOL sing 157 n n 
O1 HO1 GOL sing 158 n n 
C2 O2 GOL sing 159 n n 
C2 C3 GOL sing 160 n n 
C2 H2 GOL sing 161 n n 
O2 HO2 GOL sing 162 n n 
C3 O3 GOL sing 163 n n 
C3 H31 GOL sing 164 n n 
C3 H32 GOL sing 165 n n 
O3 HO3 GOL sing 166 n n 
#
_atom_sites.entry_id                     7LFD 
_atom_sites.fract_transf_matrix[1][1]    0.007695 
_atom_sites.fract_transf_matrix[1][2]    0.004443 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008886 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011011 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 FLC A 1 201 1 FLC FLC . 
E 5 EOH H 1 301 301 EOH EOH . 
F 6 GOL H 1 302 1 GOL GOL . 
G 6 GOL H 1 303 2 GOL GOL . 
H 6 GOL L 1 301 3 GOL GOL . 
I 7 NH4 L 1 302 1 NH4 NH4 . 
J 8 HOH A 1 301 112 HOH HOH . 
J 8 HOH A 2 302 123 HOH HOH . 
J 8 HOH A 3 303 15 HOH HOH . 
J 8 HOH A 4 304 58 HOH HOH . 
J 8 HOH A 5 305 20 HOH HOH . 
J 8 HOH A 6 306 110 HOH HOH . 
J 8 HOH A 7 307 78 HOH HOH . 
J 8 HOH A 8 308 125 HOH HOH . 
J 8 HOH A 9 309 119 HOH HOH . 
J 8 HOH A 10 310 98 HOH HOH . 
J 8 HOH A 11 311 198 HOH HOH . 
J 8 HOH A 12 312 91 HOH HOH . 
J 8 HOH A 13 313 197 HOH HOH . 
J 8 HOH A 14 314 158 HOH HOH . 
K 8 HOH H 1 401 169 HOH HOH . 
K 8 HOH H 2 402 121 HOH HOH . 
K 8 HOH H 3 403 53 HOH HOH . 
K 8 HOH H 4 404 87 HOH HOH . 
K 8 HOH H 5 405 64 HOH HOH . 
K 8 HOH H 6 406 23 HOH HOH . 
K 8 HOH H 7 407 113 HOH HOH . 
K 8 HOH H 8 408 28 HOH HOH . 
K 8 HOH H 9 409 77 HOH HOH . 
K 8 HOH H 10 410 136 HOH HOH . 
K 8 HOH H 11 411 38 HOH HOH . 
K 8 HOH H 12 412 145 HOH HOH . 
K 8 HOH H 13 413 79 HOH HOH . 
K 8 HOH H 14 414 8 HOH HOH . 
K 8 HOH H 15 415 26 HOH HOH . 
K 8 HOH H 16 416 46 HOH HOH . 
K 8 HOH H 17 417 37 HOH HOH . 
K 8 HOH H 18 418 129 HOH HOH . 
K 8 HOH H 19 419 4 HOH HOH . 
K 8 HOH H 20 420 12 HOH HOH . 
K 8 HOH H 21 421 84 HOH HOH . 
K 8 HOH H 22 422 170 HOH HOH . 
K 8 HOH H 23 423 50 HOH HOH . 
K 8 HOH H 24 424 115 HOH HOH . 
K 8 HOH H 25 425 85 HOH HOH . 
K 8 HOH H 26 426 5 HOH HOH . 
K 8 HOH H 27 427 94 HOH HOH . 
K 8 HOH H 28 428 49 HOH HOH . 
K 8 HOH H 29 429 31 HOH HOH . 
K 8 HOH H 30 430 167 HOH HOH . 
K 8 HOH H 31 431 83 HOH HOH . 
K 8 HOH H 32 432 69 HOH HOH . 
K 8 HOH H 33 433 19 HOH HOH . 
K 8 HOH H 34 434 165 HOH HOH . 
K 8 HOH H 35 435 88 HOH HOH . 
K 8 HOH H 36 436 60 HOH HOH . 
K 8 HOH H 37 437 181 HOH HOH . 
K 8 HOH H 38 438 29 HOH HOH . 
K 8 HOH H 39 439 96 HOH HOH . 
K 8 HOH H 40 440 95 HOH HOH . 
K 8 HOH H 41 441 150 HOH HOH . 
K 8 HOH H 42 442 105 HOH HOH . 
K 8 HOH H 43 443 151 HOH HOH . 
K 8 HOH H 44 444 146 HOH HOH . 
K 8 HOH H 45 445 63 HOH HOH . 
K 8 HOH H 46 446 178 HOH HOH . 
K 8 HOH H 47 447 47 HOH HOH . 
K 8 HOH H 48 448 138 HOH HOH . 
K 8 HOH H 49 449 114 HOH HOH . 
K 8 HOH H 50 450 73 HOH HOH . 
K 8 HOH H 51 451 42 HOH HOH . 
K 8 HOH H 52 452 10 HOH HOH . 
K 8 HOH H 53 453 14 HOH HOH . 
K 8 HOH H 54 454 174 HOH HOH . 
K 8 HOH H 55 455 134 HOH HOH . 
K 8 HOH H 56 456 21 HOH HOH . 
K 8 HOH H 57 457 61 HOH HOH . 
K 8 HOH H 58 458 7 HOH HOH . 
K 8 HOH H 59 459 33 HOH HOH . 
K 8 HOH H 60 460 193 HOH HOH . 
K 8 HOH H 61 461 52 HOH HOH . 
K 8 HOH H 62 462 68 HOH HOH . 
K 8 HOH H 63 463 152 HOH HOH . 
K 8 HOH H 64 464 141 HOH HOH . 
K 8 HOH H 65 465 194 HOH HOH . 
K 8 HOH H 66 466 55 HOH HOH . 
K 8 HOH H 67 467 203 HOH HOH . 
K 8 HOH H 68 468 190 HOH HOH . 
K 8 HOH H 69 469 137 HOH HOH . 
K 8 HOH H 70 470 101 HOH HOH . 
K 8 HOH H 71 471 155 HOH HOH . 
K 8 HOH H 72 472 99 HOH HOH . 
K 8 HOH H 73 473 206 HOH HOH . 
K 8 HOH H 74 474 153 HOH HOH . 
K 8 HOH H 75 475 43 HOH HOH . 
K 8 HOH H 76 476 106 HOH HOH . 
K 8 HOH H 77 477 67 HOH HOH . 
K 8 HOH H 78 478 128 HOH HOH . 
K 8 HOH H 79 479 71 HOH HOH . 
K 8 HOH H 80 480 182 HOH HOH . 
K 8 HOH H 81 481 142 HOH HOH . 
K 8 HOH H 82 482 132 HOH HOH . 
K 8 HOH H 83 483 195 HOH HOH . 
K 8 HOH H 84 484 139 HOH HOH . 
K 8 HOH H 85 485 187 HOH HOH . 
K 8 HOH H 86 486 175 HOH HOH . 
K 8 HOH H 87 487 184 HOH HOH . 
L 8 HOH L 1 401 161 HOH HOH . 
L 8 HOH L 2 402 66 HOH HOH . 
L 8 HOH L 3 403 201 HOH HOH . 
L 8 HOH L 4 404 34 HOH HOH . 
L 8 HOH L 5 405 111 HOH HOH . 
L 8 HOH L 6 406 17 HOH HOH . 
L 8 HOH L 7 407 3 HOH HOH . 
L 8 HOH L 8 408 74 HOH HOH . 
L 8 HOH L 9 409 45 HOH HOH . 
L 8 HOH L 10 410 40 HOH HOH . 
L 8 HOH L 11 411 18 HOH HOH . 
L 8 HOH L 12 412 25 HOH HOH . 
L 8 HOH L 13 413 27 HOH HOH . 
L 8 HOH L 14 414 1 HOH HOH . 
L 8 HOH L 15 415 156 HOH HOH . 
L 8 HOH L 16 416 13 HOH HOH . 
L 8 HOH L 17 417 16 HOH HOH . 
L 8 HOH L 18 418 72 HOH HOH . 
L 8 HOH L 19 419 102 HOH HOH . 
L 8 HOH L 20 420 11 HOH HOH . 
L 8 HOH L 21 421 117 HOH HOH . 
L 8 HOH L 22 422 2 HOH HOH . 
L 8 HOH L 23 423 148 HOH HOH . 
L 8 HOH L 24 424 56 HOH HOH . 
L 8 HOH L 25 425 32 HOH HOH . 
L 8 HOH L 26 426 81 HOH HOH . 
L 8 HOH L 27 427 9 HOH HOH . 
L 8 HOH L 28 428 39 HOH HOH . 
L 8 HOH L 29 429 122 HOH HOH . 
L 8 HOH L 30 430 22 HOH HOH . 
L 8 HOH L 31 431 70 HOH HOH . 
L 8 HOH L 32 432 41 HOH HOH . 
L 8 HOH L 33 433 57 HOH HOH . 
L 8 HOH L 34 434 6 HOH HOH . 
L 8 HOH L 35 435 51 HOH HOH . 
L 8 HOH L 36 436 44 HOH HOH . 
L 8 HOH L 37 437 24 HOH HOH . 
L 8 HOH L 38 438 62 HOH HOH . 
L 8 HOH L 39 439 48 HOH HOH . 
L 8 HOH L 40 440 76 HOH HOH . 
L 8 HOH L 41 441 100 HOH HOH . 
L 8 HOH L 42 442 80 HOH HOH . 
L 8 HOH L 43 443 191 HOH HOH . 
L 8 HOH L 44 444 160 HOH HOH . 
L 8 HOH L 45 445 109 HOH HOH . 
L 8 HOH L 46 446 104 HOH HOH . 
L 8 HOH L 47 447 143 HOH HOH . 
L 8 HOH L 48 448 92 HOH HOH . 
L 8 HOH L 49 449 97 HOH HOH . 
L 8 HOH L 50 450 140 HOH HOH . 
L 8 HOH L 51 451 116 HOH HOH . 
L 8 HOH L 52 452 30 HOH HOH . 
L 8 HOH L 53 453 59 HOH HOH . 
L 8 HOH L 54 454 108 HOH HOH . 
L 8 HOH L 55 455 107 HOH HOH . 
L 8 HOH L 56 456 157 HOH HOH . 
L 8 HOH L 57 457 144 HOH HOH . 
L 8 HOH L 58 458 82 HOH HOH . 
L 8 HOH L 59 459 65 HOH HOH . 
L 8 HOH L 60 460 154 HOH HOH . 
L 8 HOH L 61 461 172 HOH HOH . 
L 8 HOH L 62 462 75 HOH HOH . 
L 8 HOH L 63 463 89 HOH HOH . 
L 8 HOH L 64 464 183 HOH HOH . 
L 8 HOH L 65 465 166 HOH HOH . 
L 8 HOH L 66 466 147 HOH HOH . 
L 8 HOH L 67 467 86 HOH HOH . 
L 8 HOH L 68 468 196 HOH HOH . 
L 8 HOH L 69 469 133 HOH HOH . 
L 8 HOH L 70 470 90 HOH HOH . 
L 8 HOH L 71 471 202 HOH HOH . 
L 8 HOH L 72 472 200 HOH HOH . 
L 8 HOH L 73 473 180 HOH HOH . 
L 8 HOH L 74 474 173 HOH HOH . 
L 8 HOH L 75 475 124 HOH HOH . 
L 8 HOH L 76 476 120 HOH HOH . 
L 8 HOH L 77 477 177 HOH HOH . 
L 8 HOH L 78 478 171 HOH HOH . 
L 8 HOH L 79 479 135 HOH HOH . 
L 8 HOH L 80 480 199 HOH HOH . 
L 8 HOH L 81 481 176 HOH HOH . 
L 8 HOH L 82 482 204 HOH HOH . 
L 8 HOH L 83 483 162 HOH HOH . 
L 8 HOH L 84 484 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 6 82.46 79.349 8.014 1 85.75 ? C1 GOL 303 H 1 
HETATM 2 O O1 GOL . . . G 6 83.153 78.165 8.344 1 81.92 ? O1 GOL 303 H 1 
HETATM 3 C C2 GOL . . . G 6 83.221 80.1 6.923 1 91.22 ? C2 GOL 303 H 1 
HETATM 4 O O2 GOL . . . G 6 83.544 79.214 5.868 1 76.22 ? O2 GOL 303 H 1 
HETATM 5 C C3 GOL . . . G 6 82.394 81.278 6.397 1 87.48 ? C3 GOL 303 H 1 
HETATM 6 O O3 GOL . . . G 6 82.598 82.435 7.187 1 67.26 ? O3 GOL 303 H 1 
HETATM 7 H H11 GOL . . . G 6 81.458 79.103 7.662 1 102.9 ? H11 GOL 303 H 1 
HETATM 8 H H12 GOL . . . G 6 82.365 79.979 8.898 1 102.9 ? H12 GOL 303 H 1 
HETATM 9 H HO1 GOL . . . G 6 82.7 77.718 9.089 1 98.31 ? HO1 GOL 303 H 1 
HETATM 10 H H2 GOL . . . G 6 84.139 80.495 7.358 1 109.46 ? H2 GOL 303 H 1 
HETATM 11 H HO2 GOL . . . G 6 82.719 78.88 5.458 1 91.46 ? HO2 GOL 303 H 1 
HETATM 12 H H31 GOL . . . G 6 82.676 81.488 5.365 1 104.98 ? H31 GOL 303 H 1 
HETATM 13 H H32 GOL . . . G 6 81.336 81.013 6.408 1 104.98 ? H32 GOL 303 H 1 
HETATM 14 H HO3 GOL . . . G 6 83.231 83.031 6.735 1 80.72 ? HO3 GOL 303 H 1 
#
_model_server_stats.io_time_ms              82 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#