data_7LFE # _model_server_result.job_id rD4QSUQ7_En7-pnhUFXMQA _model_server_result.datetime_utc '2024-11-05 23:59:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":406}' # _entry.id 7LFE # _exptl.entry_id 7LFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.23 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,4R)-1-phenylhexahydropyrimidine-2,4-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LFE _cell.length_a 67.783 _cell.length_b 102.069 _cell.length_c 102.694 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N2 O2' _chem_comp.formula_weight 194.23 _chem_comp.id XWS _chem_comp.mon_nstd_flag . _chem_comp.name (2R,4R)-1-phenylhexahydropyrimidine-2,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 XWS sing 401 n n N2 C3 XWS sing 402 n n N2 C2 XWS sing 403 n n O2 C3 XWS sing 404 n n C3 C4 XWS sing 405 n n C2 N1 XWS sing 406 n n C4 C1 XWS sing 407 n n N1 C1 XWS sing 408 n n N1 C5 XWS sing 409 n n C10 C5 XWS doub 410 n y C10 C9 XWS sing 411 n y C5 C6 XWS sing 412 n y C9 C8 XWS doub 413 n y C6 C7 XWS doub 414 n y C8 C7 XWS sing 415 n y C4 H1 XWS sing 416 n n C4 H2 XWS sing 417 n n C6 H3 XWS sing 418 n n C7 H4 XWS sing 419 n n C8 H5 XWS sing 420 n n C10 H6 XWS sing 421 n n C1 H7 XWS sing 422 n n C1 H8 XWS sing 423 n n C2 H9 XWS sing 424 n n C3 H10 XWS sing 425 n n C9 H11 XWS sing 426 n n N2 H12 XWS sing 427 n n O1 H14 XWS sing 428 n n O2 H15 XWS sing 429 n n # _atom_sites.entry_id 7LFE _atom_sites.fract_transf_matrix[1][1] 0.014753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009738 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG A 1 401 502 PEG PEG . D 3 DMS A 1 402 505 DMS DMS . E 3 DMS A 1 403 506 DMS DMS . F 3 DMS A 1 404 507 DMS DMS . G 3 DMS A 1 405 508 DMS DMS . H 4 XWS A 1 406 701 XWS LIG . I 2 PEG B 1 501 501 PEG PEG . J 3 DMS B 1 502 504 DMS DMS . K 2 PEG B 1 503 701 PEG PEG . L 3 DMS B 1 504 702 DMS DMS . M 2 PEG B 1 505 703 PEG PEG . N 5 HOH A 1 501 602 HOH HOH . N 5 HOH A 2 502 603 HOH HOH . N 5 HOH A 3 503 605 HOH HOH . N 5 HOH A 4 504 601 HOH HOH . N 5 HOH A 5 505 619 HOH HOH . N 5 HOH A 6 506 613 HOH HOH . N 5 HOH A 7 507 608 HOH HOH . N 5 HOH A 8 508 616 HOH HOH . N 5 HOH A 9 509 609 HOH HOH . N 5 HOH A 10 510 606 HOH HOH . N 5 HOH A 11 511 615 HOH HOH . N 5 HOH A 12 512 611 HOH HOH . N 5 HOH A 13 513 607 HOH HOH . N 5 HOH A 14 514 614 HOH HOH . N 5 HOH A 15 515 612 HOH HOH . N 5 HOH A 16 516 622 HOH HOH . N 5 HOH A 17 517 618 HOH HOH . N 5 HOH A 18 518 620 HOH HOH . N 5 HOH A 19 519 624 HOH HOH . N 5 HOH A 20 520 623 HOH HOH . N 5 HOH A 21 521 621 HOH HOH . N 5 HOH A 22 522 625 HOH HOH . N 5 HOH A 23 523 626 HOH HOH . O 5 HOH B 1 801 801 HOH HOH . O 5 HOH B 2 802 804 HOH HOH . O 5 HOH B 3 803 807 HOH HOH . O 5 HOH B 4 804 803 HOH HOH . O 5 HOH B 5 805 806 HOH HOH . O 5 HOH B 6 806 808 HOH HOH . O 5 HOH B 7 807 809 HOH HOH . O 5 HOH B 8 808 805 HOH HOH . O 5 HOH B 9 809 810 HOH HOH . O 5 HOH B 10 810 812 HOH HOH . O 5 HOH B 11 811 813 HOH HOH . O 5 HOH B 12 812 811 HOH HOH . O 5 HOH B 13 813 628 HOH HOH . O 5 HOH B 14 814 627 HOH HOH . O 5 HOH B 15 815 814 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 XWS . . . H 4 -22.682 3.037 28.937 1 77.68 ? N1 XWS 406 A 1 HETATM 2 C C4 XWS . . . H 4 -20.544 4.516 28.92 1 64.96 ? C4 XWS 406 A 1 HETATM 3 C C5 XWS . . . H 4 -23.83 2.745 29.804 1 71.2 ? C5 XWS 406 A 1 HETATM 4 C C6 XWS . . . H 4 -23.593 2.196 31.045 1 65.09 ? C6 XWS 406 A 1 HETATM 5 C C7 XWS . . . H 4 -24.659 1.895 31.921 1 60.96 ? C7 XWS 406 A 1 HETATM 6 C C8 XWS . . . H 4 -25.957 2.154 31.541 1 62.48 ? C8 XWS 406 A 1 HETATM 7 C C10 XWS . . . H 4 -25.15 3.008 29.423 1 72.98 ? C10 XWS 406 A 1 HETATM 8 C C1 XWS . . . H 4 -21.348 3.45 29.58 1 64.63 ? C1 XWS 406 A 1 HETATM 9 C C2 XWS . . . H 4 -22.778 3.704 27.557 1 75.8 ? C2 XWS 406 A 1 HETATM 10 C C3 XWS . . . H 4 -20.466 4.469 27.484 1 73.73 ? C3 XWS 406 A 1 HETATM 11 C C9 XWS . . . H 4 -26.213 2.711 30.29 1 73.54 ? C9 XWS 406 A 1 HETATM 12 N N2 XWS . . . H 4 -21.496 3.636 26.853 1 69.7 ? N2 XWS 406 A 1 HETATM 13 O O1 XWS . . . H 4 -23.72 3.068 26.779 1 72.32 ? O1 XWS 406 A 1 HETATM 14 O O2 XWS . . . H 4 -19.158 3.983 27.091 1 69.93 ? O2 XWS 406 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #