data_7LFV
#
_model_server_result.job_id            eFX2tZRh4dOcFKtG_bSilw 
_model_server_result.datetime_utc      '2024-11-21 09:19:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lfv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":2003}' 
#
_entry.id    7LFV 
#
_exptl.entry_id    7LFV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    21 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7LFV 
_cell.length_a            103.61 
_cell.length_b            103.61 
_cell.length_c            265.354 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LFV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,GA,IA 1 1 
B,C,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,HA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 T N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
? 4 BA N N 
? 4 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 112 B CYS 112 1_555 D CB GVE 5 F GVE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? 
covale ? covale2 A SG CYS 112 B CYS 112 1_555 D CG GVE 5 F GVE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
covale ? covale3 B SG CYS 112 A CYS 112 1_555 C CB GVE 5 D GVE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? 
covale ? covale4 C C ACY 1 D ACY 1 1_555 C N 73O 2 D 73O 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale5 C C 73O 2 D 73O 2 1_555 C N DPP 3 D DPP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale6 C C DPP 3 D DPP 3 1_555 C N GLY 4 D GLY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale7 C C GLY 4 D GLY 4 1_555 C N GVE 5 D GVE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale8 D C ACY 1 F ACY 1 1_555 D N 73O 2 F 73O 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale9 D C 73O 2 F 73O 2 1_555 D N DPP 3 F DPP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale10 D C DPP 3 F DPP 3 1_555 D N GLY 4 F GLY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale11 D C GLY 4 F GLY 4 1_555 D N GVE 5 F GVE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
metalc ? metalc1 A SG CYS 225 B CYS 225 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
metalc ? metalc2 A SG CYS 227 B CYS 227 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc3 B SG CYS 190 A CYS 190 1_555 U ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc4 B SG CYS 193 A CYS 193 1_555 U ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc5 B SG CYS 225 A CYS 225 1_555 U ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc6 B SG CYS 227 A CYS 227 1_555 U ZN ZN . A ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 131 n n 
C1 C2 EDO sing 132 n n 
C1 H11 EDO sing 133 n n 
C1 H12 EDO sing 134 n n 
O1 HO1 EDO sing 135 n n 
C2 O2 EDO sing 136 n n 
C2 H21 EDO sing 137 n n 
C2 H22 EDO sing 138 n n 
O2 HO2 EDO sing 139 n n 
#
_atom_sites.entry_id                     7LFV 
_atom_sites.fract_transf_matrix[1][1]    0.009652 
_atom_sites.fract_transf_matrix[1][2]    0.005572 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011145 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003769 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN B 1 401 998 ZN ZN . 
F 4 EDO B 1 402 1001 EDO EDO . 
G 4 EDO B 1 403 1101 EDO EDO . 
H 4 EDO B 1 404 1201 EDO EDO . 
I 4 EDO B 1 405 1301 EDO EDO . 
J 4 EDO B 1 406 1901 EDO EDO . 
K 4 EDO B 1 407 2101 EDO EDO . 
L 4 EDO B 1 408 2201 EDO EDO . 
M 4 EDO B 1 409 2301 EDO EDO . 
N 4 EDO B 1 410 2401 EDO EDO . 
O 4 EDO B 1 411 2501 EDO EDO . 
P 4 EDO B 1 412 2601 EDO EDO . 
Q 4 EDO B 1 413 2701 EDO EDO . 
R 5 SO4 B 1 414 1 SO4 SO4 . 
S 5 SO4 B 1 415 2 SO4 SO4 . 
T 4 EDO A 1 2001 2001 EDO EDO . 
U 3 ZN A 1 2002 999 ZN ZN . 
V 4 EDO A 1 2003 1001 EDO EDO . 
W 4 EDO A 1 2004 1101 EDO EDO . 
X 4 EDO A 1 2005 1201 EDO EDO . 
Y 4 EDO A 1 2006 1301 EDO EDO . 
Z 4 EDO A 1 2007 1401 EDO EDO . 
AA 4 EDO A 1 2008 1501 EDO EDO . 
BA 4 EDO A 1 2009 1601 EDO EDO . 
CA 4 EDO A 1 2010 1701 EDO EDO . 
DA 6 NH4 A 1 2011 1801 NH4 NH4 . 
EA 5 SO4 A 1 2012 3 SO4 SO4 . 
FA 7 CL A 1 2013 1 CL CL . 
GA 8 HOH B 1 501 91 HOH HOH . 
GA 8 HOH B 2 502 33 HOH HOH . 
GA 8 HOH B 3 503 99 HOH HOH . 
GA 8 HOH B 4 504 110 HOH HOH . 
GA 8 HOH B 5 505 112 HOH HOH . 
GA 8 HOH B 6 506 19 HOH HOH . 
GA 8 HOH B 7 507 20 HOH HOH . 
GA 8 HOH B 8 508 66 HOH HOH . 
GA 8 HOH B 9 509 115 HOH HOH . 
GA 8 HOH B 10 510 2 HOH HOH . 
GA 8 HOH B 11 511 4 HOH HOH . 
GA 8 HOH B 12 512 38 HOH HOH . 
GA 8 HOH B 13 513 5 HOH HOH . 
GA 8 HOH B 14 514 116 HOH HOH . 
GA 8 HOH B 15 515 80 HOH HOH . 
GA 8 HOH B 16 516 50 HOH HOH . 
GA 8 HOH B 17 517 94 HOH HOH . 
GA 8 HOH B 18 518 76 HOH HOH . 
GA 8 HOH B 19 519 56 HOH HOH . 
GA 8 HOH B 20 520 54 HOH HOH . 
GA 8 HOH B 21 521 12 HOH HOH . 
GA 8 HOH B 22 522 46 HOH HOH . 
GA 8 HOH B 23 523 22 HOH HOH . 
GA 8 HOH B 24 524 69 HOH HOH . 
GA 8 HOH B 25 525 9 HOH HOH . 
GA 8 HOH B 26 526 24 HOH HOH . 
GA 8 HOH B 27 527 10 HOH HOH . 
GA 8 HOH B 28 528 1 HOH HOH . 
GA 8 HOH B 29 529 17 HOH HOH . 
GA 8 HOH B 30 530 78 HOH HOH . 
GA 8 HOH B 31 531 58 HOH HOH . 
GA 8 HOH B 32 532 23 HOH HOH . 
GA 8 HOH B 33 533 106 HOH HOH . 
GA 8 HOH B 34 534 8 HOH HOH . 
GA 8 HOH B 35 535 29 HOH HOH . 
GA 8 HOH B 36 536 35 HOH HOH . 
GA 8 HOH B 37 537 102 HOH HOH . 
GA 8 HOH B 38 538 57 HOH HOH . 
GA 8 HOH B 39 539 16 HOH HOH . 
GA 8 HOH B 40 540 14 HOH HOH . 
GA 8 HOH B 41 541 34 HOH HOH . 
GA 8 HOH B 42 542 7 HOH HOH . 
GA 8 HOH B 43 543 73 HOH HOH . 
GA 8 HOH B 44 544 109 HOH HOH . 
GA 8 HOH B 45 545 114 HOH HOH . 
GA 8 HOH B 46 546 95 HOH HOH . 
GA 8 HOH B 47 547 88 HOH HOH . 
GA 8 HOH B 48 548 63 HOH HOH . 
GA 8 HOH B 49 549 55 HOH HOH . 
GA 8 HOH B 50 550 15 HOH HOH . 
GA 8 HOH B 51 551 36 HOH HOH . 
GA 8 HOH B 52 552 21 HOH HOH . 
GA 8 HOH B 53 553 37 HOH HOH . 
GA 8 HOH B 54 554 47 HOH HOH . 
GA 8 HOH B 55 555 30 HOH HOH . 
GA 8 HOH B 56 556 72 HOH HOH . 
GA 8 HOH B 57 557 67 HOH HOH . 
GA 8 HOH B 58 558 53 HOH HOH . 
GA 8 HOH B 59 559 18 HOH HOH . 
GA 8 HOH B 60 560 85 HOH HOH . 
GA 8 HOH B 61 561 93 HOH HOH . 
GA 8 HOH B 62 562 3 HOH HOH . 
GA 8 HOH B 63 563 31 HOH HOH . 
GA 8 HOH B 64 564 104 HOH HOH . 
GA 8 HOH B 65 565 98 HOH HOH . 
GA 8 HOH B 66 566 97 HOH HOH . 
GA 8 HOH B 67 567 103 HOH HOH . 
GA 8 HOH B 68 568 68 HOH HOH . 
GA 8 HOH B 69 569 60 HOH HOH . 
GA 8 HOH B 70 570 81 HOH HOH . 
GA 8 HOH B 71 571 92 HOH HOH . 
GA 8 HOH B 72 572 105 HOH HOH . 
GA 8 HOH B 73 573 32 HOH HOH . 
GA 8 HOH B 74 574 74 HOH HOH . 
HA 8 HOH A 1 2101 86 HOH HOH . 
HA 8 HOH A 2 2102 87 HOH HOH . 
HA 8 HOH A 3 2103 25 HOH HOH . 
HA 8 HOH A 4 2104 89 HOH HOH . 
HA 8 HOH A 5 2105 117 HOH HOH . 
HA 8 HOH A 6 2106 48 HOH HOH . 
HA 8 HOH A 7 2107 42 HOH HOH . 
HA 8 HOH A 8 2108 84 HOH HOH . 
HA 8 HOH A 9 2109 13 HOH HOH . 
HA 8 HOH A 10 2110 118 HOH HOH . 
HA 8 HOH A 11 2111 45 HOH HOH . 
HA 8 HOH A 12 2112 82 HOH HOH . 
HA 8 HOH A 13 2113 107 HOH HOH . 
HA 8 HOH A 14 2114 52 HOH HOH . 
HA 8 HOH A 15 2115 83 HOH HOH . 
HA 8 HOH A 16 2116 49 HOH HOH . 
HA 8 HOH A 17 2117 51 HOH HOH . 
HA 8 HOH A 18 2118 59 HOH HOH . 
HA 8 HOH A 19 2119 27 HOH HOH . 
HA 8 HOH A 20 2120 41 HOH HOH . 
HA 8 HOH A 21 2121 26 HOH HOH . 
HA 8 HOH A 22 2122 11 HOH HOH . 
HA 8 HOH A 23 2123 71 HOH HOH . 
HA 8 HOH A 24 2124 90 HOH HOH . 
HA 8 HOH A 25 2125 40 HOH HOH . 
HA 8 HOH A 26 2126 108 HOH HOH . 
HA 8 HOH A 27 2127 43 HOH HOH . 
HA 8 HOH A 28 2128 77 HOH HOH . 
HA 8 HOH A 29 2129 65 HOH HOH . 
HA 8 HOH A 30 2130 100 HOH HOH . 
HA 8 HOH A 31 2131 101 HOH HOH . 
HA 8 HOH A 32 2132 96 HOH HOH . 
HA 8 HOH A 33 2133 79 HOH HOH . 
HA 8 HOH A 34 2134 28 HOH HOH . 
HA 8 HOH A 35 2135 62 HOH HOH . 
HA 8 HOH A 36 2136 120 HOH HOH . 
HA 8 HOH A 37 2137 70 HOH HOH . 
HA 8 HOH A 38 2138 6 HOH HOH . 
HA 8 HOH A 39 2139 61 HOH HOH . 
HA 8 HOH A 40 2140 39 HOH HOH . 
HA 8 HOH A 41 2141 64 HOH HOH . 
HA 8 HOH A 42 2142 44 HOH HOH . 
HA 8 HOH A 43 2143 111 HOH HOH . 
HA 8 HOH A 44 2144 113 HOH HOH . 
HA 8 HOH A 45 2145 121 HOH HOH . 
HA 8 HOH A 46 2146 119 HOH HOH . 
IA 8 HOH F 1 101 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . V 4 -28.411 34.318 -23.392 1 74.84 ? C1 EDO 2003 A 1 
HETATM 2 O O1 EDO . . . V 4 -27.47 33.538 -24.148 1 79.5 ? O1 EDO 2003 A 1 
HETATM 3 C C2 EDO . . . V 4 -27.72 35.586 -22.914 1 73.17 ? C2 EDO 2003 A 1 
HETATM 4 O O2 EDO . . . V 4 -27.57 36.543 -23.975 1 69.11 ? O2 EDO 2003 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#