data_7LFY # _model_server_result.job_id N-7q1MP481nIGXXFgl2-ew _model_server_result.datetime_utc '2025-01-13 12:51:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":701}' # _entry.id 7LFY # _exptl.entry_id 7LFY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 345.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 235 A GLU 365 1_555 H NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 F NA NA . A NA 702 1_555 L O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? metalc ? metalc3 F NA NA . A NA 702 1_555 M O HOH . B HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? metalc ? metalc4 F NA NA . A NA 702 1_555 N O HOH . C HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? metalc ? metalc5 F NA NA . A NA 702 1_555 O O HOH . D HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.083 ? metalc ? metalc6 H NA NA . A NA 704 1_555 B OE2 GLU 235 B GLU 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc7 H NA NA . A NA 704 1_555 C OE2 GLU 235 C GLU 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc8 H NA NA . A NA 704 1_555 D OE2 GLU 235 D GLU 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 237 n n PA O2A PCG doub 238 n n PA O5' PCG sing 239 n n PA O3' PCG sing 240 n n O1A HO1A PCG sing 241 n n O5' C5' PCG sing 242 n n C5' C4' PCG sing 243 n n C5' "H5'1" PCG sing 244 n n C5' "H5'2" PCG sing 245 n n C4' O4' PCG sing 246 n n C4' C3' PCG sing 247 n n C4' H4' PCG sing 248 n n O4' C1' PCG sing 249 n n C3' O3' PCG sing 250 n n C3' C2' PCG sing 251 n n C3' H3' PCG sing 252 n n C2' O2' PCG sing 253 n n C2' C1' PCG sing 254 n n C2' H2' PCG sing 255 n n O2' HO2' PCG sing 256 n n C1' N9 PCG sing 257 n n C1' H1' PCG sing 258 n n N9 C8 PCG sing 259 n y N9 C4 PCG sing 260 n y C8 N7 PCG doub 261 n y C8 H8 PCG sing 262 n n N7 C5 PCG sing 263 n y C5 C6 PCG sing 264 n n C5 C4 PCG doub 265 n y C6 O6 PCG doub 266 n n C6 N1 PCG sing 267 n n N1 C2 PCG sing 268 n n N1 HN1 PCG sing 269 n n C2 N2 PCG sing 270 n n C2 N3 PCG doub 271 n n N2 HN21 PCG sing 272 n n N2 HN22 PCG sing 273 n n N3 C4 PCG sing 274 n n # _atom_sites.entry_id 7LFY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PCG A 1 701 701 PCG PCG . F 3 NA A 1 702 1 NA NA . G 3 NA A 1 703 2 NA NA . H 3 NA A 1 704 3 NA NA . I 2 PCG B 1 701 701 PCG PCG . J 2 PCG C 1 701 701 PCG PCG . K 2 PCG D 1 701 701 PCG PCG . L 4 HOH A 1 801 2 HOH HOH . M 4 HOH B 1 801 1 HOH HOH . N 4 HOH C 1 801 4 HOH HOH . O 4 HOH D 1 801 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . J 2 141.224 104.098 164.066 1 87.25 ? PA PCG 701 C 1 HETATM 2 O O1A PCG . . . J 2 142.061 104.494 165.218 1 87.25 ? O1A PCG 701 C 1 HETATM 3 O O2A PCG . . . J 2 139.844 104.634 163.975 1 87.25 -1 O2A PCG 701 C 1 HETATM 4 O O5' PCG . . . J 2 142.001 104.535 162.697 1 87.25 ? O5' PCG 701 C 1 HETATM 5 C C5' PCG . . . J 2 143.197 103.811 162.311 1 87.25 ? C5' PCG 701 C 1 HETATM 6 C C4' PCG . . . J 2 142.876 102.312 162.288 1 87.25 ? C4' PCG 701 C 1 HETATM 7 O O4' PCG . . . J 2 143.957 101.413 162.003 1 87.25 ? O4' PCG 701 C 1 HETATM 8 C C3' PCG . . . J 2 142.448 101.85 163.644 1 87.25 ? C3' PCG 701 C 1 HETATM 9 O O3' PCG . . . J 2 141.196 102.47 163.927 1 87.25 ? O3' PCG 701 C 1 HETATM 10 C C2' PCG . . . J 2 142.4 100.35 163.489 1 87.25 ? C2' PCG 701 C 1 HETATM 11 O O2' PCG . . . J 2 141.114 99.952 163.025 1 87.25 ? O2' PCG 701 C 1 HETATM 12 C C1' PCG . . . J 2 143.399 100.086 162.336 1 87.25 ? C1' PCG 701 C 1 HETATM 13 N N9 PCG . . . J 2 144.514 99.167 162.694 1 87.25 ? N9 PCG 701 C 1 HETATM 14 C C8 PCG . . . J 2 144.741 97.962 162.142 1 87.25 ? C8 PCG 701 C 1 HETATM 15 N N7 PCG . . . J 2 145.832 97.429 162.702 1 87.25 ? N7 PCG 701 C 1 HETATM 16 C C5 PCG . . . J 2 146.296 98.289 163.6 1 87.25 ? C5 PCG 701 C 1 HETATM 17 C C6 PCG . . . J 2 147.387 98.272 164.465 1 87.25 ? C6 PCG 701 C 1 HETATM 18 O O6 PCG . . . J 2 148.149 97.295 164.497 1 87.25 ? O6 PCG 701 C 1 HETATM 19 N N1 PCG . . . J 2 147.606 99.371 165.312 1 87.25 ? N1 PCG 701 C 1 HETATM 20 C C2 PCG . . . J 2 146.731 100.473 165.271 1 87.25 ? C2 PCG 701 C 1 HETATM 21 N N2 PCG . . . J 2 146.932 101.52 166.069 1 87.25 ? N2 PCG 701 C 1 HETATM 22 N N3 PCG . . . J 2 145.686 100.458 164.416 1 87.25 ? N3 PCG 701 C 1 HETATM 23 C C4 PCG . . . J 2 145.458 99.402 163.594 1 87.25 ? C4 PCG 701 C 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #