data_7LG7 # _model_server_result.job_id zAaWUy8oOzVLVbmnMnjJEQ _model_server_result.datetime_utc '2024-11-13 09:02:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7LG7 # _exptl.entry_id 7LG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 460.528 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(1,3-dimethyl-2,6-dioxo-2,3,6,9-tetrahydro-1H-purin-8-yl)sulfanyl]-N-{[2-(morpholin-4-yl)ethyl]sulfonyl}propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7LG7 _cell.length_a 113.097 _cell.length_b 113.097 _cell.length_c 41.659 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H24 N6 O6 S2' _chem_comp.formula_weight 460.528 _chem_comp.id XYJ _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(1,3-dimethyl-2,6-dioxo-2,3,6,9-tetrahydro-1H-purin-8-yl)sulfanyl]-N-{[2-(morpholin-4-yl)ethyl]sulfonyl}propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 O18 XYJ sing 352 n n C19 C20 XYJ sing 353 n n O18 C17 XYJ sing 354 n n C20 N15 XYJ sing 355 n n C17 C16 XYJ sing 356 n n N15 C16 XYJ sing 357 n n N15 C14 XYJ sing 358 n n C14 C13 XYJ sing 359 n n C13 S12 XYJ sing 360 n n O22 S12 XYJ doub 361 n n O01 C02 XYJ doub 362 n n O23 C10 XYJ doub 363 n n S12 O21 XYJ doub 364 n n S12 N11 XYJ sing 365 n n N24 C03 XYJ sing 366 n y N24 C06 XYJ doub 367 n y C02 C03 XYJ sing 368 n n C02 N28 XYJ sing 369 n n C29 N28 XYJ sing 370 n n C10 N11 XYJ sing 371 n n C10 C09 XYJ sing 372 n n C03 C04 XYJ doub 373 n y S07 C06 XYJ sing 374 n n S07 C08 XYJ sing 375 n n N28 C27 XYJ sing 376 n n C06 N05 XYJ sing 377 n y C09 C08 XYJ sing 378 n n C04 N05 XYJ sing 379 n y C04 N25 XYJ sing 380 n n C27 N25 XYJ sing 381 n n C27 O30 XYJ doub 382 n n N25 C26 XYJ sing 383 n n C13 H1 XYJ sing 384 n n C13 H2 XYJ sing 385 n n C17 H3 XYJ sing 386 n n C17 H4 XYJ sing 387 n n C20 H5 XYJ sing 388 n n C20 H6 XYJ sing 389 n n C26 H7 XYJ sing 390 n n C26 H8 XYJ sing 391 n n C26 H9 XYJ sing 392 n n C08 H10 XYJ sing 393 n n C08 H11 XYJ sing 394 n n C09 H12 XYJ sing 395 n n C09 H13 XYJ sing 396 n n C14 H14 XYJ sing 397 n n C14 H15 XYJ sing 398 n n C16 H16 XYJ sing 399 n n C16 H17 XYJ sing 400 n n C19 H18 XYJ sing 401 n n C19 H19 XYJ sing 402 n n C29 H20 XYJ sing 403 n n C29 H21 XYJ sing 404 n n C29 H22 XYJ sing 405 n n N05 H23 XYJ sing 406 n n N11 H24 XYJ sing 407 n n # _atom_sites.entry_id 7LG7 _atom_sites.fract_transf_matrix[1][1] 0.008842 _atom_sites.fract_transf_matrix[1][2] 0.005105 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XYJ A 1 201 201 XYJ LIG . C 3 SO4 A 1 202 202 SO4 SO4 . D 3 SO4 A 1 203 203 SO4 SO4 . E 3 SO4 A 1 204 204 SO4 SO4 . F 3 SO4 A 1 205 205 SO4 SO4 . G 4 HOH A 1 301 37 HOH HOH . G 4 HOH A 2 302 11 HOH HOH . G 4 HOH A 3 303 23 HOH HOH . G 4 HOH A 4 304 21 HOH HOH . G 4 HOH A 5 305 10 HOH HOH . G 4 HOH A 6 306 17 HOH HOH . G 4 HOH A 7 307 43 HOH HOH . G 4 HOH A 8 308 3 HOH HOH . G 4 HOH A 9 309 1 HOH HOH . G 4 HOH A 10 310 44 HOH HOH . G 4 HOH A 11 311 25 HOH HOH . G 4 HOH A 12 312 9 HOH HOH . G 4 HOH A 13 313 46 HOH HOH . G 4 HOH A 14 314 19 HOH HOH . G 4 HOH A 15 315 26 HOH HOH . G 4 HOH A 16 316 24 HOH HOH . G 4 HOH A 17 317 8 HOH HOH . G 4 HOH A 18 318 14 HOH HOH . G 4 HOH A 19 319 7 HOH HOH . G 4 HOH A 20 320 13 HOH HOH . G 4 HOH A 21 321 30 HOH HOH . G 4 HOH A 22 322 15 HOH HOH . G 4 HOH A 23 323 36 HOH HOH . G 4 HOH A 24 324 22 HOH HOH . G 4 HOH A 25 325 38 HOH HOH . G 4 HOH A 26 326 16 HOH HOH . G 4 HOH A 27 327 2 HOH HOH . G 4 HOH A 28 328 48 HOH HOH . G 4 HOH A 29 329 27 HOH HOH . G 4 HOH A 30 330 29 HOH HOH . G 4 HOH A 31 331 39 HOH HOH . G 4 HOH A 32 332 31 HOH HOH . G 4 HOH A 33 333 33 HOH HOH . G 4 HOH A 34 334 40 HOH HOH . G 4 HOH A 35 335 20 HOH HOH . G 4 HOH A 36 336 18 HOH HOH . G 4 HOH A 37 337 32 HOH HOH . G 4 HOH A 38 338 54 HOH HOH . G 4 HOH A 39 339 5 HOH HOH . G 4 HOH A 40 340 45 HOH HOH . G 4 HOH A 41 341 35 HOH HOH . G 4 HOH A 42 342 12 HOH HOH . G 4 HOH A 43 343 50 HOH HOH . G 4 HOH A 44 344 51 HOH HOH . G 4 HOH A 45 345 53 HOH HOH . G 4 HOH A 46 346 47 HOH HOH . G 4 HOH A 47 347 49 HOH HOH . G 4 HOH A 48 348 52 HOH HOH . G 4 HOH A 49 349 34 HOH HOH . G 4 HOH A 50 350 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 XYJ . . . B 2 35.398 -38.292 8.092 1 71.64 ? C10 XYJ 201 A 1 HETATM 2 C C13 XYJ . . . B 2 37.368 -39.727 5.935 1 60.99 ? C13 XYJ 201 A 1 HETATM 3 C C17 XYJ . . . B 2 40.719 -38.552 3.648 1 60.49 ? C17 XYJ 201 A 1 HETATM 4 C C20 XYJ . . . B 2 39.133 -40.713 2.784 1 60.66 ? C20 XYJ 201 A 1 HETATM 5 C C26 XYJ . . . B 2 33.451 -32.041 11.871 1 91.07 ? C26 XYJ 201 A 1 HETATM 6 C C02 XYJ . . . B 2 34.049 -31.703 7.789 1 89.95 ? C02 XYJ 201 A 1 HETATM 7 C C03 XYJ . . . B 2 33.631 -32.859 8.302 1 90.26 ? C03 XYJ 201 A 1 HETATM 8 C C04 XYJ . . . B 2 33.435 -32.971 9.617 1 90.66 ? C04 XYJ 201 A 1 HETATM 9 C C06 XYJ . . . B 2 32.992 -34.856 8.714 1 88.62 ? C06 XYJ 201 A 1 HETATM 10 C C08 XYJ . . . B 2 33.562 -37.44 9.684 1 80.81 ? C08 XYJ 201 A 1 HETATM 11 C C09 XYJ . . . B 2 35.065 -37.511 9.373 1 76.71 ? C09 XYJ 201 A 1 HETATM 12 C C14 XYJ . . . B 2 37.821 -40.653 4.807 1 61 ? C14 XYJ 201 A 1 HETATM 13 C C16 XYJ . . . B 2 39.848 -39.357 4.601 1 60.56 ? C16 XYJ 201 A 1 HETATM 14 C C19 XYJ . . . B 2 40.009 -39.896 1.847 1 60.44 ? C19 XYJ 201 A 1 HETATM 15 C C27 XYJ . . . B 2 34.082 -30.759 9.907 1 90.65 ? C27 XYJ 201 A 1 HETATM 16 C C29 XYJ . . . B 2 34.737 -29.367 8.017 1 91.79 ? C29 XYJ 201 A 1 HETATM 17 N N05 XYJ . . . B 2 33.018 -34.21 9.875 1 90.03 ? N05 XYJ 201 A 1 HETATM 18 N N11 XYJ . . . B 2 35.846 -39.543 8.341 1 66.53 ? N11 XYJ 201 A 1 HETATM 19 N N15 XYJ . . . B 2 38.67 -39.877 3.895 1 60.84 ? N15 XYJ 201 A 1 HETATM 20 N N24 XYJ . . . B 2 33.342 -34.03 7.735 1 89.87 ? N24 XYJ 201 A 1 HETATM 21 N N25 XYJ . . . B 2 33.664 -31.922 10.417 1 90.8 ? N25 XYJ 201 A 1 HETATM 22 N N28 XYJ . . . B 2 34.275 -30.651 8.588 1 90.89 ? N28 XYJ 201 A 1 HETATM 23 O O01 XYJ . . . B 2 34.232 -31.586 6.578 1 88.65 ? O01 XYJ 201 A 1 HETATM 24 O O18 XYJ . . . B 2 41.153 -39.391 2.562 1 60.77 ? O18 XYJ 201 A 1 HETATM 25 O O21 XYJ . . . B 2 37.044 -41.766 7.722 1 61.24 ? O21 XYJ 201 A 1 HETATM 26 O O22 XYJ . . . B 2 35.041 -41.124 6.388 1 60.78 ? O22 XYJ 201 A 1 HETATM 27 O O23 XYJ . . . B 2 35.268 -37.784 6.979 1 71.1 ? O23 XYJ 201 A 1 HETATM 28 O O30 XYJ . . . B 2 34.287 -29.798 10.646 1 89.73 ? O30 XYJ 201 A 1 HETATM 29 S S07 XYJ . . . B 2 32.467 -36.562 8.503 1 85.53 ? S07 XYJ 201 A 1 HETATM 30 S S12 XYJ . . . B 2 36.274 -40.592 7.115 1 60.94 ? S12 XYJ 201 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #