data_7LG8 # _model_server_result.job_id M0iBqePotOo3ZW4-UAQLiA _model_server_result.datetime_utc '2024-11-14 17:06:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1101}' # _entry.id 7LG8 # _exptl.entry_id 7LG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 556.65 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.41 _cell.angle_gamma 90 _cell.entry_id 7LG8 _cell.length_a 55.654 _cell.length_b 75.947 _cell.length_c 150.978 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 106 A CYS 797 1_555 F C41 8RC . A 8RC 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.74 ? covale ? covale2 B SG CYS 106 B CYS 797 1_555 H C41 8RC . B 8RC 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? covale ? covale3 C SG CYS 106 C CYS 797 1_555 J C41 8RC . C 8RC 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale4 D SG CYS 106 D CYS 797 1_555 L C41 8RC . D 8RC 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? # _chem_comp.formula 'C31 H29 F N4 O3 S' _chem_comp.formula_weight 556.65 _chem_comp.id VNS _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 N22 VNS sing 463 n n C24 C25 VNS sing 464 n n N22 C23 VNS sing 465 n n N22 C21 VNS sing 466 n n C25 C19 VNS sing 467 n n C21 C20 VNS sing 468 n n C19 C20 VNS sing 469 n n C19 C18 VNS sing 470 n n C18 C26 VNS doub 471 n y C18 C17 VNS sing 472 n y C26 C27 VNS sing 473 n y C17 C16 VNS doub 474 n y C27 C15 VNS doub 475 n y C16 C15 VNS sing 476 n y C15 C14 VNS sing 477 n n C14 C13 VNS doub 478 n y C14 C28 VNS sing 479 n y C13 C12 VNS sing 480 n y C28 C29 VNS doub 481 n y O32 C11 VNS doub 482 n n C12 C11 VNS sing 483 n n C12 C30 VNS doub 484 n y C11 N10 VNS sing 485 n n C29 C30 VNS sing 486 n y O40 C39 VNS sing 487 n n C30 C31 VNS sing 488 n n N10 C31 VNS sing 489 n n N10 C09 VNS sing 490 n n C39 C38 VNS doub 491 n y C39 C33 VNS sing 492 n y C09 C33 VNS sing 493 n n C09 C02 VNS sing 494 n n C38 C37 VNS sing 495 n y C33 C34 VNS doub 496 n y C02 N03 VNS sing 497 n n C02 O01 VNS doub 498 n n N03 C04 VNS sing 499 n n C37 C35 VNS doub 500 n y C34 C35 VNS sing 501 n y C04 N05 VNS doub 502 n y C04 S08 VNS sing 503 n y C35 F36 VNS sing 504 n n N05 C06 VNS sing 505 n y S08 C07 VNS sing 506 n y C06 C07 VNS doub 507 n y C06 H1 VNS sing 508 n n C07 H2 VNS sing 509 n n C09 H3 VNS sing 510 n n C13 H4 VNS sing 511 n n C16 H5 VNS sing 512 n n C19 H6 VNS sing 513 n n C20 H7 VNS sing 514 n n C20 H8 VNS sing 515 n n C21 H9 VNS sing 516 n n C21 H10 VNS sing 517 n n C23 H11 VNS sing 518 n n C23 H12 VNS sing 519 n n C23 H13 VNS sing 520 n n C24 H14 VNS sing 521 n n C24 H15 VNS sing 522 n n C25 H16 VNS sing 523 n n C25 H17 VNS sing 524 n n C17 H18 VNS sing 525 n n C26 H19 VNS sing 526 n n C27 H20 VNS sing 527 n n C28 H21 VNS sing 528 n n C29 H22 VNS sing 529 n n C31 H23 VNS sing 530 n n C31 H24 VNS sing 531 n n C34 H25 VNS sing 532 n n C37 H26 VNS sing 533 n n C38 H27 VNS sing 534 n n N03 H28 VNS sing 535 n n O40 H30 VNS sing 536 n n # _atom_sites.entry_id 7LG8 _atom_sites.fract_transf_matrix[1][1] 0.017968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001385 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 VNS A 1 1101 1101 VNS J63 . F 3 8RC A 1 1102 1102 8RC NAQ . G 2 VNS B 1 1101 1101 VNS J63 . H 3 8RC B 1 1102 1102 8RC NAQ . I 2 VNS C 1 1101 1101 VNS J63 . J 3 8RC C 1 1102 1102 8RC NAQ . K 2 VNS D 1 1101 1101 VNS J63 . L 3 8RC D 1 1102 1102 8RC NAQ . M 4 HOH A 1 1201 10 HOH HOH . M 4 HOH A 2 1202 11 HOH HOH . M 4 HOH A 3 1203 12 HOH HOH . N 4 HOH B 1 1201 9 HOH HOH . O 4 HOH C 1 1201 7 HOH HOH . O 4 HOH C 2 1202 5 HOH HOH . O 4 HOH C 3 1203 4 HOH HOH . O 4 HOH C 4 1204 6 HOH HOH . O 4 HOH C 5 1205 8 HOH HOH . P 4 HOH D 1 1201 14 HOH HOH . P 4 HOH D 2 1202 3 HOH HOH . P 4 HOH D 3 1203 1 HOH HOH . P 4 HOH D 4 1204 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 VNS . . . E 2 12.379 5.301 -54.043 1 38.89 ? O01 VNS 1101 A 1 HETATM 2 C C02 VNS . . . E 2 11.384 4.801 -53.907 1 39.4 ? C02 VNS 1101 A 1 HETATM 3 C C04 VNS . . . E 2 10.102 6.564 -55.252 1 37.84 ? C04 VNS 1101 A 1 HETATM 4 C C06 VNS . . . E 2 9.438 8.533 -56.33 1 49.19 ? C06 VNS 1101 A 1 HETATM 5 C C07 VNS . . . E 2 10.758 8.518 -56.767 1 47.18 ? C07 VNS 1101 A 1 HETATM 6 C C09 VNS . . . E 2 11.32 3.386 -53.038 1 45.13 ? C09 VNS 1101 A 1 HETATM 7 C C11 VNS . . . E 2 12.899 3.654 -50.889 1 43.38 ? C11 VNS 1101 A 1 HETATM 8 C C12 VNS . . . E 2 14.256 3.185 -50.413 1 45.62 ? C12 VNS 1101 A 1 HETATM 9 C C13 VNS . . . E 2 15.007 3.393 -49.215 1 49 ? C13 VNS 1101 A 1 HETATM 10 C C14 VNS . . . E 2 16.299 2.84 -49.002 1 51.21 ? C14 VNS 1101 A 1 HETATM 11 C C16 VNS . . . E 2 17.227 4.259 -46.917 1 54.96 ? C16 VNS 1101 A 1 HETATM 12 C C18 VNS . . . E 2 18.651 3.297 -45.098 1 66.08 ? C18 VNS 1101 A 1 HETATM 13 C C19 VNS . . . E 2 19.471 3.357 -43.758 1 69.84 ? C19 VNS 1101 A 1 HETATM 14 C C20 VNS . . . E 2 20.332 4.599 -43.889 1 76.05 ? C20 VNS 1101 A 1 HETATM 15 C C21 VNS . . . E 2 20.248 5.625 -42.727 1 77.7 ? C21 VNS 1101 A 1 HETATM 16 C C23 VNS . . . E 2 19.344 6.033 -40.639 1 81.27 ? C23 VNS 1101 A 1 HETATM 17 C C24 VNS . . . E 2 19.513 3.814 -41.203 1 67.14 ? C24 VNS 1101 A 1 HETATM 18 C C25 VNS . . . E 2 18.687 3.419 -42.446 1 59.88 ? C25 VNS 1101 A 1 HETATM 19 C C15 VNS . . . E 2 17.108 3.06 -47.659 1 53.69 ? C15 VNS 1101 A 1 HETATM 20 C C17 VNS . . . E 2 17.965 4.382 -45.692 1 61.59 ? C17 VNS 1101 A 1 HETATM 21 C C26 VNS . . . E 2 18.526 2.091 -45.828 1 65.56 ? C26 VNS 1101 A 1 HETATM 22 C C27 VNS . . . E 2 17.79 1.986 -47.039 1 59.9 ? C27 VNS 1101 A 1 HETATM 23 C C28 VNS . . . E 2 16.778 2.035 -50.082 1 50.93 ? C28 VNS 1101 A 1 HETATM 24 C C29 VNS . . . E 2 16.048 1.816 -51.284 1 48.86 ? C29 VNS 1101 A 1 HETATM 25 C C30 VNS . . . E 2 14.764 2.399 -51.455 1 45.92 ? C30 VNS 1101 A 1 HETATM 26 C C31 VNS . . . E 2 13.761 2.349 -52.613 1 44.25 ? C31 VNS 1101 A 1 HETATM 27 C C33 VNS . . . E 2 10.99 2.226 -54.036 1 44.29 ? C33 VNS 1101 A 1 HETATM 28 C C34 VNS . . . E 2 10.984 2.422 -55.415 1 40 ? C34 VNS 1101 A 1 HETATM 29 C C35 VNS . . . E 2 10.672 1.386 -56.328 1 43.93 ? C35 VNS 1101 A 1 HETATM 30 C C37 VNS . . . E 2 10.357 0.099 -55.855 1 46.96 ? C37 VNS 1101 A 1 HETATM 31 C C38 VNS . . . E 2 10.349 -0.126 -54.483 1 47.25 ? C38 VNS 1101 A 1 HETATM 32 C C39 VNS . . . E 2 10.653 0.914 -53.588 1 45.75 ? C39 VNS 1101 A 1 HETATM 33 F F36 VNS . . . E 2 10.684 1.608 -57.609 1 53.88 ? F36 VNS 1101 A 1 HETATM 34 N N03 VNS . . . E 2 10.151 5.352 -54.482 1 40.56 ? N03 VNS 1101 A 1 HETATM 35 N N05 VNS . . . E 2 9.089 7.427 -55.482 1 41.86 ? N05 VNS 1101 A 1 HETATM 36 N N10 VNS . . . E 2 12.571 3.171 -52.214 1 49.25 ? N10 VNS 1101 A 1 HETATM 37 N N22 VNS . . . E 2 20.188 5.09 -41.363 1 80.87 ? N22 VNS 1101 A 1 HETATM 38 O O32 VNS . . . E 2 12.111 4.372 -50.287 1 44.36 ? O32 VNS 1101 A 1 HETATM 39 O O40 VNS . . . E 2 10.643 0.687 -52.24 1 44 ? O40 VNS 1101 A 1 HETATM 40 S S08 VNS . . . E 2 11.556 7.147 -56.135 1 39.95 ? S08 VNS 1101 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 40 #