data_7LG8
#
_model_server_result.job_id            aAUnzcLbxkY4kytuQE-Y3Q 
_model_server_result.datetime_utc      '2024-11-29 02:29:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lg8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1101}' 
#
_entry.id    7LG8 
#
_exptl.entry_id    7LG8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              556.65 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.41 
_cell.angle_gamma         90 
_cell.entry_id            7LG8 
_cell.length_a            55.654 
_cell.length_b            75.947 
_cell.length_c            150.978 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LG8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 106 A CYS 797 1_555 F C41 8RC . A 8RC 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.74 ? 
covale ? covale2 B SG CYS 106 B CYS 797 1_555 H C41 8RC . B 8RC 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? 
covale ? covale3 C SG CYS 106 C CYS 797 1_555 J C41 8RC . C 8RC 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale4 D SG CYS 106 D CYS 797 1_555 L C41 8RC . D 8RC 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
#
_chem_comp.formula           'C31 H29 F N4 O3 S' 
_chem_comp.formula_weight    556.65 
_chem_comp.id                VNS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C24 N22 VNS sing 463 n n 
C24 C25 VNS sing 464 n n 
N22 C23 VNS sing 465 n n 
N22 C21 VNS sing 466 n n 
C25 C19 VNS sing 467 n n 
C21 C20 VNS sing 468 n n 
C19 C20 VNS sing 469 n n 
C19 C18 VNS sing 470 n n 
C18 C26 VNS doub 471 n y 
C18 C17 VNS sing 472 n y 
C26 C27 VNS sing 473 n y 
C17 C16 VNS doub 474 n y 
C27 C15 VNS doub 475 n y 
C16 C15 VNS sing 476 n y 
C15 C14 VNS sing 477 n n 
C14 C13 VNS doub 478 n y 
C14 C28 VNS sing 479 n y 
C13 C12 VNS sing 480 n y 
C28 C29 VNS doub 481 n y 
O32 C11 VNS doub 482 n n 
C12 C11 VNS sing 483 n n 
C12 C30 VNS doub 484 n y 
C11 N10 VNS sing 485 n n 
C29 C30 VNS sing 486 n y 
O40 C39 VNS sing 487 n n 
C30 C31 VNS sing 488 n n 
N10 C31 VNS sing 489 n n 
N10 C09 VNS sing 490 n n 
C39 C38 VNS doub 491 n y 
C39 C33 VNS sing 492 n y 
C09 C33 VNS sing 493 n n 
C09 C02 VNS sing 494 n n 
C38 C37 VNS sing 495 n y 
C33 C34 VNS doub 496 n y 
C02 N03 VNS sing 497 n n 
C02 O01 VNS doub 498 n n 
N03 C04 VNS sing 499 n n 
C37 C35 VNS doub 500 n y 
C34 C35 VNS sing 501 n y 
C04 N05 VNS doub 502 n y 
C04 S08 VNS sing 503 n y 
C35 F36 VNS sing 504 n n 
N05 C06 VNS sing 505 n y 
S08 C07 VNS sing 506 n y 
C06 C07 VNS doub 507 n y 
C06 H1 VNS sing 508 n n 
C07 H2 VNS sing 509 n n 
C09 H3 VNS sing 510 n n 
C13 H4 VNS sing 511 n n 
C16 H5 VNS sing 512 n n 
C19 H6 VNS sing 513 n n 
C20 H7 VNS sing 514 n n 
C20 H8 VNS sing 515 n n 
C21 H9 VNS sing 516 n n 
C21 H10 VNS sing 517 n n 
C23 H11 VNS sing 518 n n 
C23 H12 VNS sing 519 n n 
C23 H13 VNS sing 520 n n 
C24 H14 VNS sing 521 n n 
C24 H15 VNS sing 522 n n 
C25 H16 VNS sing 523 n n 
C25 H17 VNS sing 524 n n 
C17 H18 VNS sing 525 n n 
C26 H19 VNS sing 526 n n 
C27 H20 VNS sing 527 n n 
C28 H21 VNS sing 528 n n 
C29 H22 VNS sing 529 n n 
C31 H23 VNS sing 530 n n 
C31 H24 VNS sing 531 n n 
C34 H25 VNS sing 532 n n 
C37 H26 VNS sing 533 n n 
C38 H27 VNS sing 534 n n 
N03 H28 VNS sing 535 n n 
O40 H30 VNS sing 536 n n 
#
_atom_sites.entry_id                     7LG8 
_atom_sites.fract_transf_matrix[1][1]    0.017968 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001385 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013167 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006643 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 VNS A 1 1101 1101 VNS J63 . 
F 3 8RC A 1 1102 1102 8RC NAQ . 
G 2 VNS B 1 1101 1101 VNS J63 . 
H 3 8RC B 1 1102 1102 8RC NAQ . 
I 2 VNS C 1 1101 1101 VNS J63 . 
J 3 8RC C 1 1102 1102 8RC NAQ . 
K 2 VNS D 1 1101 1101 VNS J63 . 
L 3 8RC D 1 1102 1102 8RC NAQ . 
M 4 HOH A 1 1201 10 HOH HOH . 
M 4 HOH A 2 1202 11 HOH HOH . 
M 4 HOH A 3 1203 12 HOH HOH . 
N 4 HOH B 1 1201 9 HOH HOH . 
O 4 HOH C 1 1201 7 HOH HOH . 
O 4 HOH C 2 1202 5 HOH HOH . 
O 4 HOH C 3 1203 4 HOH HOH . 
O 4 HOH C 4 1204 6 HOH HOH . 
O 4 HOH C 5 1205 8 HOH HOH . 
P 4 HOH D 1 1201 14 HOH HOH . 
P 4 HOH D 2 1202 3 HOH HOH . 
P 4 HOH D 3 1203 1 HOH HOH . 
P 4 HOH D 4 1204 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 VNS . . . K 2 15.204 -7.091 -15.81 1 61.49 ? O01 VNS 1101 D 1 
HETATM 2 C C02 VNS . . . K 2 16.075 -7.682 -16.217 1 55.1 ? C02 VNS 1101 D 1 
HETATM 3 C C04 VNS . . . K 2 17.853 -6.158 -15.171 1 60.29 ? C04 VNS 1101 D 1 
HETATM 4 C C06 VNS . . . K 2 18.998 -4.355 -14.201 1 59.41 ? C06 VNS 1101 D 1 
HETATM 5 C C07 VNS . . . K 2 17.836 -4.278 -13.435 1 67.22 ? C07 VNS 1101 D 1 
HETATM 6 C C09 VNS . . . K 2 15.728 -9.019 -17.128 1 54.23 ? C09 VNS 1101 D 1 
HETATM 7 C C11 VNS . . . K 2 13.81 -8.217 -18.788 1 58.14 ? C11 VNS 1101 D 1 
HETATM 8 C C12 VNS . . . K 2 12.312 -8.381 -18.973 1 60.98 ? C12 VNS 1101 D 1 
HETATM 9 C C13 VNS . . . K 2 11.37 -7.884 -19.934 1 62.29 ? C13 VNS 1101 D 1 
HETATM 10 C C14 VNS . . . K 2 9.98 -8.188 -19.895 1 64 ? C14 VNS 1101 D 1 
HETATM 11 C C16 VNS . . . K 2 8.878 -6.317 -21.481 1 80.25 ? C16 VNS 1101 D 1 
HETATM 12 C C18 VNS . . . K 2 6.936 -6.711 -23.014 1 75.08 ? C18 VNS 1101 D 1 
HETATM 13 C C19 VNS . . . K 2 5.862 -6.253 -24.07 1 83.75 ? C19 VNS 1101 D 1 
HETATM 14 C C20 VNS . . . K 2 5.566 -4.839 -23.607 1 92.5 ? C20 VNS 1101 D 1 
HETATM 15 C C21 VNS . . . K 2 5.55 -3.752 -24.708 1 93.24 ? C21 VNS 1101 D 1 
HETATM 16 C C23 VNS . . . K 2 5.382 -3.179 -26.936 1 98.51 ? C23 VNS 1101 D 1 
HETATM 17 C C24 VNS . . . K 2 5.264 -5.441 -26.476 1 98.43 ? C24 VNS 1101 D 1 
HETATM 18 C C25 VNS . . . K 2 6.241 -6.213 -25.554 1 89.92 ? C25 VNS 1101 D 1 
HETATM 19 C C15 VNS . . . K 2 8.941 -7.638 -20.971 1 70.75 ? C15 VNS 1101 D 1 
HETATM 20 C C17 VNS . . . K 2 7.922 -5.865 -22.455 1 76.31 ? C17 VNS 1101 D 1 
HETATM 21 C C26 VNS . . . K 2 6.987 -8.037 -22.511 1 75.54 ? C26 VNS 1101 D 1 
HETATM 22 C C27 VNS . . . K 2 7.944 -8.472 -21.544 1 72.81 ? C27 VNS 1101 D 1 
HETATM 23 C C28 VNS . . . K 2 9.602 -9.032 -18.803 1 66.74 ? C28 VNS 1101 D 1 
HETATM 24 C C29 VNS . . . K 2 10.52 -9.534 -17.834 1 68.94 ? C29 VNS 1101 D 1 
HETATM 25 C C30 VNS . . . K 2 11.9 -9.205 -17.917 1 61.49 ? C30 VNS 1101 D 1 
HETATM 26 C C31 VNS . . . K 2 13.106 -9.58 -17.037 1 55.15 ? C31 VNS 1101 D 1 
HETATM 27 C C33 VNS . . . K 2 16.097 -10.306 -16.301 1 59.22 ? C33 VNS 1101 D 1 
HETATM 28 C C34 VNS . . . K 2 16.53 -10.23 -14.978 1 55.18 ? C34 VNS 1101 D 1 
HETATM 29 C C35 VNS . . . K 2 16.883 -11.373 -14.219 1 52.43 ? C35 VNS 1101 D 1 
HETATM 30 C C37 VNS . . . K 2 16.812 -12.658 -14.793 1 56.04 ? C37 VNS 1101 D 1 
HETATM 31 C C38 VNS . . . K 2 16.396 -12.771 -16.116 1 59.29 ? C38 VNS 1101 D 1 
HETATM 32 C C39 VNS . . . K 2 16.049 -11.623 -16.86 1 61.76 ? C39 VNS 1101 D 1 
HETATM 33 F F36 VNS . . . K 2 17.275 -11.242 -12.984 1 57.11 ? F36 VNS 1101 D 1 
HETATM 34 N N03 VNS . . . K 2 17.469 -7.3 -15.959 1 57 ? N03 VNS 1101 D 1 
HETATM 35 N N05 VNS . . . K 2 18.99 -5.422 -15.166 1 54.66 ? N05 VNS 1101 D 1 
HETATM 36 N N10 VNS . . . K 2 14.316 -8.933 -17.636 1 54.56 ? N10 VNS 1101 D 1 
HETATM 37 N N22 VNS . . . K 2 4.891 -4.133 -25.95 1 102.39 ? N22 VNS 1101 D 1 
HETATM 38 O O32 VNS . . . K 2 14.582 -7.567 -19.485 1 56.71 ? O32 VNS 1101 D 1 
HETATM 39 O O40 VNS . . . K 2 15.637 -11.742 -18.162 1 60.75 ? O40 VNS 1101 D 1 
HETATM 40 S S08 VNS . . . K 2 16.74 -5.506 -13.909 1 52.5 ? S08 VNS 1101 D 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           40 
#