data_7LG8
#
_model_server_result.job_id            pC4CNWG3dPLzhpzUPYCprA 
_model_server_result.datetime_utc      '2024-11-14 16:56:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lg8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1102}' 
#
_entry.id    7LG8 
#
_exptl.entry_id    7LG8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              562.706 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '6-ethyl-3-[[4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]amino]-5-[(3R)-1-prop-2-enoylpyrrolidin-3-yl]oxy-pyrazin e-2-carboxamide' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.41 
_cell.angle_gamma         90 
_cell.entry_id            7LG8 
_cell.length_a            55.654 
_cell.length_b            75.947 
_cell.length_c            150.978 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LG8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 106 A CYS 797 1_555 F C41 8RC . A 8RC 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.74 ? 
covale ? covale2 B SG CYS 106 B CYS 797 1_555 H C41 8RC . B 8RC 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? 
covale ? covale3 C SG CYS 106 C CYS 797 1_555 J C41 8RC . C 8RC 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale4 D SG CYS 106 D CYS 797 1_555 L C41 8RC . D 8RC 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
#
_chem_comp.formula           'C30 H42 N8 O3' 
_chem_comp.formula_weight    562.706 
_chem_comp.id                8RC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '6-ethyl-3-[[4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]amino]-5-[(3R)-1-prop-2-enoylpyrrolidin-3-yl]oxy-pyrazin e-2-carboxamide' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Naquotinib 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C32 C9 8RC sing 1 n n 
C9 C5 8RC sing 2 n n 
C5 N6 8RC doub 3 n y 
C5 C4 8RC sing 4 n y 
N6 C1 8RC sing 5 n y 
N31 C29 8RC sing 6 n n 
O8 C4 8RC sing 7 n n 
O8 C33 8RC sing 8 n n 
C4 N3 8RC doub 9 n y 
C1 C29 8RC sing 10 n n 
C1 C2 8RC doub 11 n y 
C29 O30 8RC doub 12 n n 
C37 C33 8RC sing 13 n n 
C37 C36 8RC sing 14 n n 
O39 C38 8RC doub 15 n n 
C33 C34 8RC sing 16 n n 
C36 N35 8RC sing 17 n n 
N3 C2 8RC sing 18 n y 
C34 N35 8RC sing 19 n n 
C2 N7 8RC sing 20 n n 
N35 C38 8RC sing 21 n n 
C38 C40 8RC sing 22 n n 
N7 C10 8RC sing 23 n n 
C40 C41 8RC doub 24 n n 
C10 C11 8RC doub 25 n y 
C10 C15 8RC sing 26 n y 
C11 C12 8RC sing 27 n y 
C15 C14 8RC doub 28 n y 
C12 C13 8RC doub 29 n y 
C14 C13 8RC sing 30 n y 
C13 N16 8RC sing 31 n n 
N16 C17 8RC sing 32 n n 
N16 C21 8RC sing 33 n n 
C17 C18 8RC sing 34 n n 
C21 C20 8RC sing 35 n n 
C18 C19 8RC sing 36 n n 
C20 C19 8RC sing 37 n n 
C19 N22 8RC sing 38 n n 
N22 C27 8RC sing 39 n n 
N22 C23 8RC sing 40 n n 
C27 C26 8RC sing 41 n n 
C23 C24 8RC sing 42 n n 
C26 N25 8RC sing 43 n n 
N25 C24 8RC sing 44 n n 
N25 C28 8RC sing 45 n n 
C12 H1 8RC sing 46 n n 
C14 H2 8RC sing 47 n n 
C11 H3 8RC sing 48 n n 
C15 H4 8RC sing 49 n n 
C18 H5 8RC sing 50 n n 
C18 H6 8RC sing 51 n n 
C20 H7 8RC sing 52 n n 
C20 H8 8RC sing 53 n n 
C37 H9 8RC sing 54 n n 
C37 H10 8RC sing 55 n n 
C17 H11 8RC sing 56 n n 
C17 H12 8RC sing 57 n n 
C21 H13 8RC sing 58 n n 
C21 H14 8RC sing 59 n n 
C36 H15 8RC sing 60 n n 
C36 H16 8RC sing 61 n n 
C23 H17 8RC sing 62 n n 
C23 H18 8RC sing 63 n n 
C27 H19 8RC sing 64 n n 
C27 H20 8RC sing 65 n n 
C24 H21 8RC sing 66 n n 
C24 H22 8RC sing 67 n n 
C26 H23 8RC sing 68 n n 
C26 H24 8RC sing 69 n n 
C34 H25 8RC sing 70 n n 
C34 H26 8RC sing 71 n n 
C19 H27 8RC sing 72 n n 
C33 H28 8RC sing 73 n n 
C32 H29 8RC sing 74 n n 
C32 H30 8RC sing 75 n n 
C32 H31 8RC sing 76 n n 
C41 H32 8RC sing 77 n n 
C41 H33 8RC sing 78 n n 
C28 H35 8RC sing 79 n n 
C28 H36 8RC sing 80 n n 
C28 H37 8RC sing 81 n n 
C9 H38 8RC sing 82 n n 
C9 H39 8RC sing 83 n n 
C40 H40 8RC sing 84 n n 
N31 H44 8RC sing 85 n n 
N31 H45 8RC sing 86 n n 
N7 H46 8RC sing 87 n n 
#
_atom_sites.entry_id                     7LG8 
_atom_sites.fract_transf_matrix[1][1]    0.017968 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001385 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013167 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006643 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 VNS A 1 1101 1101 VNS J63 . 
F 3 8RC A 1 1102 1102 8RC NAQ . 
G 2 VNS B 1 1101 1101 VNS J63 . 
H 3 8RC B 1 1102 1102 8RC NAQ . 
I 2 VNS C 1 1101 1101 VNS J63 . 
J 3 8RC C 1 1102 1102 8RC NAQ . 
K 2 VNS D 1 1101 1101 VNS J63 . 
L 3 8RC D 1 1102 1102 8RC NAQ . 
M 4 HOH A 1 1201 10 HOH HOH . 
M 4 HOH A 2 1202 11 HOH HOH . 
M 4 HOH A 3 1203 12 HOH HOH . 
N 4 HOH B 1 1201 9 HOH HOH . 
O 4 HOH C 1 1201 7 HOH HOH . 
O 4 HOH C 2 1202 5 HOH HOH . 
O 4 HOH C 3 1203 4 HOH HOH . 
O 4 HOH C 4 1204 6 HOH HOH . 
O 4 HOH C 5 1205 8 HOH HOH . 
P 4 HOH D 1 1201 14 HOH HOH . 
P 4 HOH D 2 1202 3 HOH HOH . 
P 4 HOH D 3 1203 1 HOH HOH . 
P 4 HOH D 4 1204 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 8RC . . . J 3 28.507 -40.232 -15.197 1 45.45 ? C12 8RC 1102 C 1 
HETATM 2 C C14 8RC . . . J 3 28.722 -40.455 -12.806 1 52.8 ? C14 8RC 1102 C 1 
HETATM 3 C C11 8RC . . . J 3 27.331 -41.039 -15.155 1 44.86 ? C11 8RC 1102 C 1 
HETATM 4 C C15 8RC . . . J 3 27.536 -41.264 -12.749 1 54.66 ? C15 8RC 1102 C 1 
HETATM 5 C C13 8RC . . . J 3 29.247 -39.902 -14.013 1 46.42 ? C13 8RC 1102 C 1 
HETATM 6 C C10 8RC . . . J 3 26.809 -41.574 -13.943 1 50.32 ? C10 8RC 1102 C 1 
HETATM 7 C C1 8RC . . . J 3 24.146 -44.293 -15.059 1 53.28 ? C1 8RC 1102 C 1 
HETATM 8 C C5 8RC . . . J 3 23.632 -44.176 -17.446 1 50.3 ? C5 8RC 1102 C 1 
HETATM 9 C C2 8RC . . . J 3 24.903 -43.049 -15.104 1 51.52 ? C2 8RC 1102 C 1 
HETATM 10 C C4 8RC . . . J 3 24.381 -42.934 -17.484 1 47.77 ? C4 8RC 1102 C 1 
HETATM 11 C C29 8RC . . . J 3 23.961 -45.144 -13.704 1 48.8 ? C29 8RC 1102 C 1 
HETATM 12 C C38 8RC . . . J 3 27.243 -41.504 -21.631 1 65.88 ? C38 8RC 1102 C 1 
HETATM 13 C C18 8RC . . . J 3 32.08 -37.002 -14.912 1 60.41 ? C18 8RC 1102 C 1 
HETATM 14 C C20 8RC . . . J 3 33.151 -38.833 -13.55 1 65.1 ? C20 8RC 1102 C 1 
HETATM 15 C C37 8RC . . . J 3 24.14 -40.1 -19.623 1 56.58 ? C37 8RC 1102 C 1 
HETATM 16 C C17 8RC . . . J 3 30.683 -37.754 -14.914 1 49.96 ? C17 8RC 1102 C 1 
HETATM 17 C C21 8RC . . . J 3 31.856 -39.689 -13.651 1 53.66 ? C21 8RC 1102 C 1 
HETATM 18 C C36 8RC . . . J 3 24.782 -40.359 -21.035 1 61.01 ? C36 8RC 1102 C 1 
HETATM 19 C C23 8RC . . . J 3 34.689 -36.943 -12.22 1 76.95 ? C23 8RC 1102 C 1 
HETATM 20 C C27 8RC . . . J 3 34.683 -35.871 -14.39 1 82.96 ? C27 8RC 1102 C 1 
HETATM 21 C C24 8RC . . . J 3 36.15 -37.007 -12.077 1 88.94 ? C24 8RC 1102 C 1 
HETATM 22 C C26 8RC . . . J 3 36.126 -35.526 -14.236 1 85.96 ? C26 8RC 1102 C 1 
HETATM 23 C C34 8RC . . . J 3 26.418 -40.592 -19.367 1 55.37 ? C34 8RC 1102 C 1 
HETATM 24 C C19 8RC . . . J 3 32.951 -37.357 -13.674 1 61.62 ? C19 8RC 1102 C 1 
HETATM 25 C C33 8RC . . . J 3 25.015 -40.865 -18.677 1 52.21 ? C33 8RC 1102 C 1 
HETATM 26 C C32 8RC . . . J 3 22.301 -46.22 -18.479 1 60.62 ? C32 8RC 1102 C 1 
HETATM 27 C C41 8RC . . . J 3 29.106 -43.27 -21.152 1 65.01 ? C41 8RC 1102 C 1 
HETATM 28 C C28 8RC . . . J 3 38.123 -36.439 -13.28 1 85.84 ? C28 8RC 1102 C 1 
HETATM 29 C C9 8RC . . . J 3 22.925 -44.826 -18.698 1 57.85 ? C9 8RC 1102 C 1 
HETATM 30 C C40 8RC . . . J 3 28.695 -41.967 -21.188 1 70.55 ? C40 8RC 1102 C 1 
HETATM 31 N N6 8RC . . . J 3 23.569 -44.773 -16.213 1 57.02 ? N6 8RC 1102 C 1 
HETATM 32 N N3 8RC . . . J 3 24.966 -42.435 -16.358 1 46.22 ? N3 8RC 1102 C 1 
HETATM 33 N N16 8RC . . . J 3 30.549 -39.029 -14.082 1 44.42 ? N16 8RC 1102 C 1 
HETATM 34 N N35 8RC . . . J 3 26.229 -40.869 -20.77 1 57.78 ? N35 8RC 1102 C 1 
HETATM 35 N N22 8RC . . . J 3 34.351 -37.123 -13.677 1 74.4 ? N22 8RC 1102 C 1 
HETATM 36 N N25 8RC . . . J 3 36.797 -35.95 -12.935 1 91.79 ? N25 8RC 1102 C 1 
HETATM 37 N N31 8RC . . . J 3 22.971 -46.073 -13.435 1 51.27 ? N31 8RC 1102 C 1 
HETATM 38 N N7 8RC . . . J 3 25.577 -42.413 -13.938 1 53.99 ? N7 8RC 1102 C 1 
HETATM 39 O O30 8RC . . . J 3 24.812 -44.918 -12.835 1 52.55 ? O30 8RC 1102 C 1 
HETATM 40 O O39 8RC . . . J 3 26.956 -41.685 -22.801 1 66.44 ? O39 8RC 1102 C 1 
HETATM 41 O O8 8RC . . . J 3 24.517 -42.247 -18.684 1 52.36 ? O8 8RC 1102 C 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           41 
#