data_7LGD
#
_model_server_result.job_id            OJTGCjgwnCFBEb8loi95Ng 
_model_server_result.datetime_utc      '2024-10-19 10:23:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lgd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":305}' 
#
_entry.id    7LGD 
#
_exptl.entry_id    7LGD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LGD 
_cell.length_a            64.454 
_cell.length_b            107.176 
_cell.length_c            174.19 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LGD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,Q,R,V 1 1 
C,D,E,J,K,L,M,N,O,P,S,T,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             N 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 C SG CYS 101 C CYS 101 1_555 C SG CYS 164 C CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
disulf ? disulf5 C SG CYS 203 C CYS 203 1_555 C SG CYS 259 C CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
disulf ? disulf6 D SG CYS 26 D CYS 25 1_555 D SG CYS 81 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7LGD 
_atom_sites.fract_transf_matrix[1][1]    0.015515 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00933 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005741 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 CL A 1 301 2 CL CL . 
H 4 CL A 1 302 3 CL CL . 
I 4 CL B 1 101 4 CL CL . 
J 5 SO4 C 1 301 1 SO4 SO4 . 
K 5 SO4 C 1 302 2 SO4 SO4 . 
L 5 SO4 C 1 303 3 SO4 SO4 . 
M 4 CL C 1 304 1 CL CL . 
N 6 NA C 1 305 1 NA NA . 
O 5 SO4 D 1 101 4 SO4 SO4 . 
P 4 CL D 1 102 5 CL CL . 
Q 7 HOH A 1 401 12 HOH HOH . 
Q 7 HOH A 2 402 17 HOH HOH . 
Q 7 HOH A 3 403 6 HOH HOH . 
Q 7 HOH A 4 404 13 HOH HOH . 
Q 7 HOH A 5 405 37 HOH HOH . 
Q 7 HOH A 6 406 1 HOH HOH . 
Q 7 HOH A 7 407 29 HOH HOH . 
Q 7 HOH A 8 408 31 HOH HOH . 
Q 7 HOH A 9 409 34 HOH HOH . 
Q 7 HOH A 10 410 5 HOH HOH . 
Q 7 HOH A 11 411 2 HOH HOH . 
Q 7 HOH A 12 412 24 HOH HOH . 
Q 7 HOH A 13 413 40 HOH HOH . 
Q 7 HOH A 14 414 42 HOH HOH . 
R 7 HOH B 1 201 44 HOH HOH . 
R 7 HOH B 2 202 46 HOH HOH . 
S 7 HOH C 1 401 39 HOH HOH . 
S 7 HOH C 2 402 21 HOH HOH . 
S 7 HOH C 3 403 32 HOH HOH . 
S 7 HOH C 4 404 10 HOH HOH . 
S 7 HOH C 5 405 11 HOH HOH . 
S 7 HOH C 6 406 49 HOH HOH . 
S 7 HOH C 7 407 16 HOH HOH . 
S 7 HOH C 8 408 30 HOH HOH . 
S 7 HOH C 9 409 23 HOH HOH . 
S 7 HOH C 10 410 25 HOH HOH . 
S 7 HOH C 11 411 48 HOH HOH . 
S 7 HOH C 12 412 28 HOH HOH . 
S 7 HOH C 13 413 36 HOH HOH . 
S 7 HOH C 14 414 47 HOH HOH . 
S 7 HOH C 15 415 8 HOH HOH . 
S 7 HOH C 16 416 26 HOH HOH . 
S 7 HOH C 17 417 43 HOH HOH . 
T 7 HOH D 1 201 18 HOH HOH . 
T 7 HOH D 2 202 9 HOH HOH . 
T 7 HOH D 3 203 38 HOH HOH . 
T 7 HOH D 4 204 4 HOH HOH . 
U 7 HOH E 1 101 27 HOH HOH . 
U 7 HOH E 2 102 15 HOH HOH . 
V 7 HOH F 1 101 33 HOH HOH . 
V 7 HOH F 2 102 41 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         N 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               0.424 
_atom_site.Cartn_y               -1.827 
_atom_site.Cartn_z               2.515 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        57.49 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           305 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#