data_7LGQ # _model_server_result.job_id 1daKmPSgHhJJwdwAWwTpMQ _model_server_result.datetime_utc '2025-04-01 11:17:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lgq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":901}' # _entry.id 7LGQ # _exptl.entry_id 7LGQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N ? 3 Q N N ? 3 R N N ? 3 U N N ? 3 V N N ? 3 Y N N ? 3 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C 7ID 5 E 7ID 5 1_555 E N 7ID 6 E 7ID 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.518 ? covale ? covale2 E C 7ID 6 E 7ID 6 1_555 E N 7ID 7 E 7ID 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale3 E C 7ID 7 E 7ID 7 1_555 E N 7ID 8 E 7ID 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 E C 7ID 8 E 7ID 8 1_555 E N ASN 9 E ASN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 F C 7ID 5 F 7ID 5 1_555 F N 7ID 6 F 7ID 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.518 ? covale ? covale6 F C 7ID 6 F 7ID 6 1_555 F N 7ID 7 F 7ID 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale7 F C 7ID 7 F 7ID 7 1_555 F N 7ID 8 F 7ID 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale8 F C 7ID 8 F 7ID 8 1_555 F N ASN 9 F ASN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 G C 7ID 5 G 7ID 5 1_555 G N 7ID 6 G 7ID 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.518 ? covale ? covale10 G C 7ID 6 G 7ID 6 1_555 G N 7ID 7 G 7ID 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale11 G C 7ID 7 G 7ID 7 1_555 G N 7ID 8 G 7ID 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale12 G C 7ID 8 G 7ID 8 1_555 G N ASN 9 G ASN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale13 H C 7ID 5 H 7ID 5 1_555 H N 7ID 6 H 7ID 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.518 ? covale ? covale14 H C 7ID 6 H 7ID 6 1_555 H N 7ID 7 H 7ID 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale15 H C 7ID 7 H 7ID 7 1_555 H N 7ID 8 H 7ID 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale16 H C 7ID 8 H 7ID 8 1_555 H N ASN 9 H ASN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale17 I C 7ID 6 I 7ID 6 1_555 I N 7ID 7 I 7ID 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale18 I C 7ID 7 I 7ID 7 1_555 I N 7ID 8 I 7ID 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale19 I C 7ID 8 I 7ID 8 1_555 I N ASN 9 I ASN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale20 J C 7ID 6 J 7ID 6 1_555 J N 7ID 7 J 7ID 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale21 J C 7ID 7 J 7ID 7 1_555 J N 7ID 8 J 7ID 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale22 J C 7ID 8 J 7ID 8 1_555 J N ASN 9 J ASN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale23 K C 7ID 6 K 7ID 6 1_555 K N 7ID 7 K 7ID 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale24 K C 7ID 7 K 7ID 7 1_555 K N 7ID 8 K 7ID 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale25 K C 7ID 8 K 7ID 8 1_555 K N ASN 9 K ASN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale26 L C 7ID 6 L 7ID 6 1_555 L N 7ID 7 L 7ID 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale27 L C 7ID 7 L 7ID 7 1_555 L N 7ID 8 L 7ID 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale28 L C 7ID 8 L 7ID 8 1_555 L N ASN 9 L ASN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? metalc ? metalc1 A OG1 THR 500 A THR 500 1_555 O MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc2 A OE1 GLU 558 A GLU 558 1_555 O MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? metalc ? metalc3 A OE2 GLU 558 A GLU 558 1_555 O MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? metalc ? metalc4 M O2G ATP . A ATP 901 1_555 P MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc5 B OG1 THR 500 B THR 500 1_555 S MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc6 B OE1 GLU 558 B GLU 558 1_555 S MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? metalc ? metalc7 B OE2 GLU 558 B GLU 558 1_555 S MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc8 Q O2G ATP . B ATP 901 1_555 T MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc9 C OG1 THR 500 C THR 500 1_555 W MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc10 C OE1 GLU 558 C GLU 558 1_555 W MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? metalc ? metalc11 C OE2 GLU 558 C GLU 558 1_555 W MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? metalc ? metalc12 U O2G ATP . C ATP 901 1_555 X MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc13 D OG1 THR 500 D THR 500 1_555 AA MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc14 D OE1 GLU 558 D GLU 558 1_555 AA MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? metalc ? metalc15 D OE2 GLU 558 D GLU 558 1_555 AA MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? metalc ? metalc16 Y O2G ATP . D ATP 901 1_555 BA MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 108 n n PG O2G ATP sing 109 n n PG O3G ATP sing 110 n n PG O3B ATP sing 111 n n O2G HOG2 ATP sing 112 n n O3G HOG3 ATP sing 113 n n PB O1B ATP doub 114 n n PB O2B ATP sing 115 n n PB O3B ATP sing 116 n n PB O3A ATP sing 117 n n O2B HOB2 ATP sing 118 n n PA O1A ATP doub 119 n n PA O2A ATP sing 120 n n PA O3A ATP sing 121 n n PA O5' ATP sing 122 n n O2A HOA2 ATP sing 123 n n O5' C5' ATP sing 124 n n C5' C4' ATP sing 125 n n C5' "H5'1" ATP sing 126 n n C5' "H5'2" ATP sing 127 n n C4' O4' ATP sing 128 n n C4' C3' ATP sing 129 n n C4' H4' ATP sing 130 n n O4' C1' ATP sing 131 n n C3' O3' ATP sing 132 n n C3' C2' ATP sing 133 n n C3' H3' ATP sing 134 n n O3' HO3' ATP sing 135 n n C2' O2' ATP sing 136 n n C2' C1' ATP sing 137 n n C2' H2' ATP sing 138 n n O2' HO2' ATP sing 139 n n C1' N9 ATP sing 140 n n C1' H1' ATP sing 141 n n N9 C8 ATP sing 142 n y N9 C4 ATP sing 143 n y C8 N7 ATP doub 144 n y C8 H8 ATP sing 145 n n N7 C5 ATP sing 146 n y C5 C6 ATP sing 147 n y C5 C4 ATP doub 148 n y C6 N6 ATP sing 149 n n C6 N1 ATP doub 150 n y N6 HN61 ATP sing 151 n n N6 HN62 ATP sing 152 n n N1 C2 ATP sing 153 n y C2 N3 ATP doub 154 n y C2 H2 ATP sing 155 n n N3 C4 ATP sing 156 n y # _atom_sites.entry_id 7LGQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 ATP A 1 901 876 ATP ATP . N 3 ATP A 1 902 877 ATP ATP . O 4 MG A 1 903 878 MG MG . P 4 MG A 1 904 879 MG MG . Q 3 ATP B 1 901 876 ATP ATP . R 3 ATP B 1 902 877 ATP ATP . S 4 MG B 1 903 878 MG MG . T 4 MG B 1 904 879 MG MG . U 3 ATP C 1 901 876 ATP ATP . V 3 ATP C 1 902 877 ATP ATP . W 4 MG C 1 903 878 MG MG . X 4 MG C 1 904 879 MG MG . Y 3 ATP D 1 901 876 ATP ATP . Z 3 ATP D 1 902 877 ATP ATP . AA 4 MG D 1 903 878 MG MG . BA 4 MG D 1 904 879 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . M 3 156.523 138.92 141.415 1 54.01 ? PG ATP 901 A 1 HETATM 2 O O1G ATP . . . M 3 155.742 138.038 142.273 1 56.83 ? O1G ATP 901 A 1 HETATM 3 O O2G ATP . . . M 3 156.762 138.33 140.098 1 63.51 -1 O2G ATP 901 A 1 HETATM 4 O O3G ATP . . . M 3 155.985 140.281 141.337 1 67.1 ? O3G ATP 901 A 1 HETATM 5 P PB ATP . . . M 3 159.442 139.31 142.121 1 45.9 ? PB ATP 901 A 1 HETATM 6 O O1B ATP . . . M 3 159.81 140.092 143.267 1 58.07 -1 O1B ATP 901 A 1 HETATM 7 O O2B ATP . . . M 3 159.745 139.826 140.8 1 50.25 ? O2B ATP 901 A 1 HETATM 8 O O3B ATP . . . M 3 157.885 139.004 142.239 1 60.97 ? O3B ATP 901 A 1 HETATM 9 P PA ATP . . . M 3 160.654 137.106 143.635 1 53.23 ? PA ATP 901 A 1 HETATM 10 O O1A ATP . . . M 3 159.565 136.94 144.62 1 58.43 -1 O1A ATP 901 A 1 HETATM 11 O O2A ATP . . . M 3 161.9 137.706 144.16 1 58.88 ? O2A ATP 901 A 1 HETATM 12 O O3A ATP . . . M 3 160.114 137.893 142.362 1 50.76 ? O3A ATP 901 A 1 HETATM 13 O O5' ATP . . . M 3 160.977 135.688 142.995 1 64.48 ? O5' ATP 901 A 1 HETATM 14 C C5' ATP . . . M 3 160.916 135.462 141.569 1 70.75 ? C5' ATP 901 A 1 HETATM 15 C C4' ATP . . . M 3 161.786 134.278 141.217 1 75 ? C4' ATP 901 A 1 HETATM 16 O O4' ATP . . . M 3 162.619 134.633 140.085 1 74.56 ? O4' ATP 901 A 1 HETATM 17 C C3' ATP . . . M 3 162.777 133.822 142.294 1 73.46 ? C3' ATP 901 A 1 HETATM 18 O O3' ATP . . . M 3 162.248 132.842 143.176 1 70.66 ? O3' ATP 901 A 1 HETATM 19 C C2' ATP . . . M 3 163.914 133.236 141.46 1 74.85 ? C2' ATP 901 A 1 HETATM 20 O O2' ATP . . . M 3 163.623 131.939 141 1 81.52 ? O2' ATP 901 A 1 HETATM 21 C C1' ATP . . . M 3 163.939 134.176 140.265 1 68.27 ? C1' ATP 901 A 1 HETATM 22 N N9 ATP . . . M 3 164.806 135.319 140.418 1 63.23 ? N9 ATP 901 A 1 HETATM 23 C C8 ATP . . . M 3 165.105 136.001 141.552 1 60.45 ? C8 ATP 901 A 1 HETATM 24 N N7 ATP . . . M 3 165.922 137.001 141.338 1 55.77 ? N7 ATP 901 A 1 HETATM 25 C C5 ATP . . . M 3 166.169 136.964 139.978 1 59.91 ? C5 ATP 901 A 1 HETATM 26 C C6 ATP . . . M 3 166.954 137.756 139.131 1 60.85 ? C6 ATP 901 A 1 HETATM 27 N N6 ATP . . . M 3 167.667 138.797 139.539 1 60.71 ? N6 ATP 901 A 1 HETATM 28 N N1 ATP . . . M 3 166.967 137.436 137.82 1 58.18 ? N1 ATP 901 A 1 HETATM 29 C C2 ATP . . . M 3 166.252 136.388 137.408 1 55.18 ? C2 ATP 901 A 1 HETATM 30 N N3 ATP . . . M 3 165.481 135.574 138.114 1 55.68 ? N3 ATP 901 A 1 HETATM 31 C C4 ATP . . . M 3 165.485 135.926 139.404 1 60.72 ? C4 ATP 901 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #