data_7LGS
#
_model_server_result.job_id            2F9VpqAbapNmGcZWtqmPQA 
_model_server_result.datetime_utc      '2024-11-25 05:13:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lgs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":2706}' 
#
_entry.id    7LGS 
#
_exptl.entry_id    7LGS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.4 
_cell.angle_gamma         90 
_cell.entry_id            7LGS 
_cell.length_a            60.659 
_cell.length_b            132.1 
_cell.length_c            85.805 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LGS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,P 1 1 
B,G,H,I,J,K,L,Q 2 1 
C,M,N,R 3 1 
D,O,S 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 106 A CYS 800 1_555 E C32 Q6K . A Q6K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? 
covale ? covale2 B SG CYS 106 B CYS 800 1_555 I C32 Q6K . B Q6K 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? 
covale ? covale3 C SG CYS 106 C CYS 800 1_555 M C32 Q6K . C Q6K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? 
covale ? covale4 D SG CYS 106 D CYS 800 1_555 O C32 Q6K . D Q6K 2500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 103 n n 
C1 C2 EDO sing 104 n n 
C1 H11 EDO sing 105 n n 
C1 H12 EDO sing 106 n n 
O1 HO1 EDO sing 107 n n 
C2 O2 EDO sing 108 n n 
C2 H21 EDO sing 109 n n 
C2 H22 EDO sing 110 n n 
O2 HO2 EDO sing 111 n n 
#
_atom_sites.entry_id                     7LGS 
_atom_sites.fract_transf_matrix[1][1]    0.016486 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000402 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00757 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011658 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 Q6K A 1 1101 2500 Q6K LIG . 
F 3 EDO A 1 1102 2601 EDO EDO . 
G 3 EDO B 1 2701 2701 EDO EDO . 
H 3 EDO B 1 2702 2801 EDO EDO . 
I 2 Q6K B 1 2703 2500 Q6K LIG . 
J 3 EDO B 1 2704 2601 EDO EDO . 
K 4 CIT B 1 2705 2701 CIT CIT . 
L 3 EDO B 1 2706 2801 EDO EDO . 
M 2 Q6K C 1 1101 2500 Q6K LIG . 
N 3 EDO C 1 1102 2601 EDO EDO . 
O 2 Q6K D 1 2500 2500 Q6K LIG . 
P 5 HOH A 1 1201 141 HOH HOH . 
P 5 HOH A 2 1202 128 HOH HOH . 
P 5 HOH A 3 1203 98 HOH HOH . 
P 5 HOH A 4 1204 14 HOH HOH . 
P 5 HOH A 5 1205 22 HOH HOH . 
P 5 HOH A 6 1206 115 HOH HOH . 
P 5 HOH A 7 1207 67 HOH HOH . 
P 5 HOH A 8 1208 149 HOH HOH . 
P 5 HOH A 9 1209 130 HOH HOH . 
P 5 HOH A 10 1210 35 HOH HOH . 
P 5 HOH A 11 1211 70 HOH HOH . 
P 5 HOH A 12 1212 97 HOH HOH . 
P 5 HOH A 13 1213 148 HOH HOH . 
P 5 HOH A 14 1214 162 HOH HOH . 
P 5 HOH A 15 1215 155 HOH HOH . 
P 5 HOH A 16 1216 84 HOH HOH . 
P 5 HOH A 17 1217 81 HOH HOH . 
P 5 HOH A 18 1218 1 HOH HOH . 
P 5 HOH A 19 1219 15 HOH HOH . 
P 5 HOH A 20 1220 16 HOH HOH . 
P 5 HOH A 21 1221 68 HOH HOH . 
P 5 HOH A 22 1222 145 HOH HOH . 
P 5 HOH A 23 1223 38 HOH HOH . 
P 5 HOH A 24 1224 2 HOH HOH . 
P 5 HOH A 25 1225 150 HOH HOH . 
P 5 HOH A 26 1226 159 HOH HOH . 
P 5 HOH A 27 1227 76 HOH HOH . 
P 5 HOH A 28 1228 152 HOH HOH . 
P 5 HOH A 29 1229 116 HOH HOH . 
P 5 HOH A 30 1230 21 HOH HOH . 
P 5 HOH A 31 1231 151 HOH HOH . 
P 5 HOH A 32 1232 139 HOH HOH . 
P 5 HOH A 33 1233 24 HOH HOH . 
P 5 HOH A 34 1234 153 HOH HOH . 
P 5 HOH A 35 1235 20 HOH HOH . 
P 5 HOH A 36 1236 34 HOH HOH . 
P 5 HOH A 37 1237 154 HOH HOH . 
P 5 HOH A 38 1238 142 HOH HOH . 
P 5 HOH A 39 1239 23 HOH HOH . 
P 5 HOH A 40 1240 129 HOH HOH . 
P 5 HOH A 41 1241 37 HOH HOH . 
P 5 HOH A 42 1242 36 HOH HOH . 
P 5 HOH A 43 1243 114 HOH HOH . 
P 5 HOH A 44 1244 73 HOH HOH . 
Q 5 HOH B 1 2801 144 HOH HOH . 
Q 5 HOH B 2 2802 140 HOH HOH . 
Q 5 HOH B 3 2803 3 HOH HOH . 
Q 5 HOH B 4 2804 171 HOH HOH . 
Q 5 HOH B 5 2805 170 HOH HOH . 
Q 5 HOH B 6 2806 147 HOH HOH . 
Q 5 HOH B 7 2807 75 HOH HOH . 
Q 5 HOH B 8 2808 53 HOH HOH . 
Q 5 HOH B 9 2809 174 HOH HOH . 
Q 5 HOH B 10 2810 55 HOH HOH . 
Q 5 HOH B 11 2811 112 HOH HOH . 
Q 5 HOH B 12 2812 80 HOH HOH . 
Q 5 HOH B 13 2813 158 HOH HOH . 
Q 5 HOH B 14 2814 132 HOH HOH . 
Q 5 HOH B 15 2815 157 HOH HOH . 
Q 5 HOH B 16 2816 17 HOH HOH . 
Q 5 HOH B 17 2817 173 HOH HOH . 
Q 5 HOH B 18 2818 106 HOH HOH . 
Q 5 HOH B 19 2819 60 HOH HOH . 
Q 5 HOH B 20 2820 82 HOH HOH . 
Q 5 HOH B 21 2821 117 HOH HOH . 
Q 5 HOH B 22 2822 131 HOH HOH . 
Q 5 HOH B 23 2823 102 HOH HOH . 
Q 5 HOH B 24 2824 93 HOH HOH . 
Q 5 HOH B 25 2825 91 HOH HOH . 
Q 5 HOH B 26 2826 137 HOH HOH . 
Q 5 HOH B 27 2827 11 HOH HOH . 
Q 5 HOH B 28 2828 121 HOH HOH . 
Q 5 HOH B 29 2829 118 HOH HOH . 
Q 5 HOH B 30 2830 79 HOH HOH . 
Q 5 HOH B 31 2831 101 HOH HOH . 
Q 5 HOH B 32 2832 143 HOH HOH . 
Q 5 HOH B 33 2833 52 HOH HOH . 
Q 5 HOH B 34 2834 72 HOH HOH . 
Q 5 HOH B 35 2835 77 HOH HOH . 
Q 5 HOH B 36 2836 156 HOH HOH . 
Q 5 HOH B 37 2837 172 HOH HOH . 
Q 5 HOH B 38 2838 138 HOH HOH . 
Q 5 HOH B 39 2839 95 HOH HOH . 
Q 5 HOH B 40 2840 105 HOH HOH . 
Q 5 HOH B 41 2841 167 HOH HOH . 
Q 5 HOH B 42 2842 99 HOH HOH . 
Q 5 HOH B 43 2843 94 HOH HOH . 
Q 5 HOH B 44 2844 166 HOH HOH . 
Q 5 HOH B 45 2845 103 HOH HOH . 
Q 5 HOH B 46 2846 89 HOH HOH . 
R 5 HOH C 1 1201 66 HOH HOH . 
R 5 HOH C 2 1202 107 HOH HOH . 
R 5 HOH C 3 1203 6 HOH HOH . 
R 5 HOH C 4 1204 96 HOH HOH . 
R 5 HOH C 5 1205 42 HOH HOH . 
R 5 HOH C 6 1206 26 HOH HOH . 
R 5 HOH C 7 1207 39 HOH HOH . 
R 5 HOH C 8 1208 44 HOH HOH . 
R 5 HOH C 9 1209 74 HOH HOH . 
R 5 HOH C 10 1210 40 HOH HOH . 
R 5 HOH C 11 1211 41 HOH HOH . 
R 5 HOH C 12 1212 4 HOH HOH . 
R 5 HOH C 13 1213 123 HOH HOH . 
R 5 HOH C 14 1214 160 HOH HOH . 
R 5 HOH C 15 1215 122 HOH HOH . 
R 5 HOH C 16 1216 146 HOH HOH . 
R 5 HOH C 17 1217 27 HOH HOH . 
R 5 HOH C 18 1218 58 HOH HOH . 
R 5 HOH C 19 1219 119 HOH HOH . 
R 5 HOH C 20 1220 28 HOH HOH . 
R 5 HOH C 21 1221 161 HOH HOH . 
R 5 HOH C 22 1222 45 HOH HOH . 
R 5 HOH C 23 1223 120 HOH HOH . 
R 5 HOH C 24 1224 48 HOH HOH . 
R 5 HOH C 25 1225 5 HOH HOH . 
R 5 HOH C 26 1226 47 HOH HOH . 
R 5 HOH C 27 1227 43 HOH HOH . 
R 5 HOH C 28 1228 65 HOH HOH . 
S 5 HOH D 1 2601 92 HOH HOH . 
S 5 HOH D 2 2602 111 HOH HOH . 
S 5 HOH D 3 2603 127 HOH HOH . 
S 5 HOH D 4 2604 31 HOH HOH . 
S 5 HOH D 5 2605 113 HOH HOH . 
S 5 HOH D 6 2606 169 HOH HOH . 
S 5 HOH D 7 2607 29 HOH HOH . 
S 5 HOH D 8 2608 175 HOH HOH . 
S 5 HOH D 9 2609 165 HOH HOH . 
S 5 HOH D 10 2610 83 HOH HOH . 
S 5 HOH D 11 2611 126 HOH HOH . 
S 5 HOH D 12 2612 168 HOH HOH . 
S 5 HOH D 13 2613 125 HOH HOH . 
S 5 HOH D 14 2614 59 HOH HOH . 
S 5 HOH D 15 2615 32 HOH HOH . 
S 5 HOH D 16 2616 7 HOH HOH . 
S 5 HOH D 17 2617 64 HOH HOH . 
S 5 HOH D 18 2618 133 HOH HOH . 
S 5 HOH D 19 2619 164 HOH HOH . 
S 5 HOH D 20 2620 86 HOH HOH . 
S 5 HOH D 21 2621 176 HOH HOH . 
S 5 HOH D 22 2622 57 HOH HOH . 
S 5 HOH D 23 2623 163 HOH HOH . 
S 5 HOH D 24 2624 177 HOH HOH . 
S 5 HOH D 25 2625 109 HOH HOH . 
S 5 HOH D 26 2626 134 HOH HOH . 
S 5 HOH D 27 2627 136 HOH HOH . 
S 5 HOH D 28 2628 30 HOH HOH . 
S 5 HOH D 29 2629 87 HOH HOH . 
S 5 HOH D 30 2630 88 HOH HOH . 
S 5 HOH D 31 2631 61 HOH HOH . 
S 5 HOH D 32 2632 33 HOH HOH . 
S 5 HOH D 33 2633 135 HOH HOH . 
S 5 HOH D 34 2634 124 HOH HOH . 
S 5 HOH D 35 2635 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . L 3 26.836 3.226 23.849 1 66.15 ? C1 EDO 2706 B 1 
HETATM 2 O O1 EDO . . . L 3 27.237 3.724 22.585 1 65.43 ? O1 EDO 2706 B 1 
HETATM 3 C C2 EDO . . . L 3 27.926 3.173 24.854 1 64.29 ? C2 EDO 2706 B 1 
HETATM 4 O O2 EDO . . . L 3 27.668 2.265 25.905 1 61.57 ? O2 EDO 2706 B 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#